an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

CO₂

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

N-(5-phosphoribosyl)-anthranilate

H₂O

4'-phosphopantetheine

isopentenyl diphosphate

glutathione disulfide

D-gluconate 6-phosphate

propanoyl phosphate

glycolate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

α-D-glucosamine 1-phosphate

phosphoenolpyruvate

formate

oxaloacetate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

citrate

(R)-5-phosphomevalonate

(R)-mevalonate

(R)-mevalonate diphosphate

prenyl diphosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

5-methylcytosine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

L-selenocystathionine

γ-L-glutamyl 5-phosphate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

thiamine diphosphate

acetyl phosphate

2-dehydropantoate

hydrogen peroxide

(R)-4'-phosphopantothenate

(R)-pantothenate

L-canavanine

canavaninosuccinate

L-arginino-succinate

O-ureido-L-homoserine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

DNA without lesion

xanthine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

orotidine 5'-phosphate

carboxyphosphate

carbamoyl phosphate

(S)-dihydroorotate

(R)-4'-phosphopantothenoyl-L-cysteine

shikimate 3-phosphate

shikimate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroshikimate

3-dehydroquinate

anthranilate

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

glycerone phosphate

urea

N-succinyl-L,L-2,6-diaminopimelate

autoinducer 2

S-ribosyl-L-homocysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-α-amino-ε-keto-pimelate

carbamate

L-citrulline

L-tyrosine

L-cysteine

L-methionine

L-asparagine

L-tryptophan

L-serine

L-alanine

L-glutamate

L-glutamine

L-phenylalanine

L-aspartate

L-proline

L-valine

L-leucine

L-isoleucine

glycine

L-threonine

L-lysine

L-arginine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-ornithine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

seleno-L-homocysteine

L-aspartyl-4-phosphate

trans-4-hydroxy-L-proline

N-methyl-L-tryptophan

N-carbamoyl-L-aspartate

L-cystathionine

L,L-diaminopimelate

D-alanine

D-glutamate

D-aspartate

β-alanine

protocatechuate

4-aminobenzoate

D-gluconate

acetate

(R)-pantoate

orotate

(S)-1-pyrroline-5-carboxylate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

(R)-lactate

pyruvate

2-oxobutanoate

2-oxoglutarate

3-phenyl-2-oxopropanoate

3-oxoadipate

3-carboxy-cis,cis-muconate

3-[(1-carboxyvinyl)oxy]benzoate

chorismate

fumarate

succinate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside

octyl α-D-glucopyranoside

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

β-D-fructofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

sucrose

6_G-kestotriose

1,1-kestotetraose

1-kestotriose

ethanol

methylglyoxal

formaldehyde

(R)-acetoin

diacetyl

cyclic dehypoxanthine futalosine

dehypoxanthine futalosine

6-amino-6-deoxyfutalosine

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

guanine

adenine

AMP

IMP

GMP

XMP

ATP

GTP

ITP

XTP

ADP

GDP

dGDP

dADP

dATP

dGTP

dAMP

dGMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

thymine

uracil

cytosine

preQ₁

dTMP

dUMP

UTP

UDP

dUDP

CDP

dCDP

CTP

dUTP

dCMP

dCTP

dTTP

dTDP

CMP

UMP

cytidine

uridine

thymidine

2'-deoxyuridine

2'-deoxycytidine

5-fluorouracil

coenzyme A

pppGpp

ppGpp

adenylo-succinate

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

NADP⁺

NAD⁺

NADPH

NADH

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5-fluorocytosine

glycine betaine

(S)-NADHX

(R)-NADHX

thiamine

nicotinate

3'-dephospho-CoA

acetyl-CoA

succinyl-CoA

malonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

oleoyl-CoA

acetoacetyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

propanoyl-CoA

18-hydroxylinoleoyl-CoA

S-(hydroxymethyl)glutathione

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

spermine

putrescine

spermidine

N¹-acetylspermine

N-acetylputrescine

N¹-acetylspermidine

2-aminoprop-2-enoate

2-iminopropanoate

nitrate

hydrogencarbonate

chloride

phosphonate

phosphate

diphosphate

Co²⁺

Zn²⁺

Na⁺

K⁺

ammonium

H⁺

2-chloroacetate

preQ₀

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

ethylphosphate

DNA with lesion