an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
α-D-ribose 1,5-bisphosphate
carbon monoxide
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropylmalate
2-oxovalerate
3-ethylmalate
4-methyl-2-oxopentanoate
(2S)-2-isopropyl-3-oxosuccinate
anthranilate
N-(5-phosphoribosyl)-anthranilate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
3-dehydroshikimate
3-dehydroquinate
shikimate
3-deoxy-D-arabino-heptulosonate 7-phosphate
2,5-didehydro-D-gluconate
2-keto-D-gluconate
ADP-L-glycero-β-D-manno-heptose
ADP-D-glycero-β-D-manno-heptose
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
S-methyl-5'-thioadenosine
hydrogenobyrinate
preuroporphyrinogen
porphobilinogen
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
carbonic acid
histidinal
hydrogen peroxide
thiamine diphosphate
N-acetyl-D-muramate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
carboxyphosphate
N5-carboxyaminoimidazole ribonucleotide
2-amino-3-carboxymuconate-6-semialdehyde
formamide
aminoacetone
1,2-dihydro-β-NADP
pyruvic oxime
enol-phenylpyruvate
dethiobiotin
H2O
CO2
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
3-methyl-2-oxobutanoate
(S)-3-methyl-2-oxopentanoate
(R)-2,3-dihydroxy-3-methylpentanoate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate 3-phosphate
phosphoenolpyruvate
quinolinate
β-nicotinate D-ribonucleotide
glycolate
O-acetyl-L-serine
dimethylamine
N2-succinylglutamate
glycerone phosphate
ethanolamine
prephenate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
L-histidinol phosphate
urea
L-canavanine
D-galactosamine-6-phosphate
N-acetyl-D-galactosamine 6-phosphate
7,8-diaminopelargonate
butanoyl phosphate
carbamoyl phosphate
oxaloacetate
hydroxylamine
ammonia
N-acetyl-β-glucosaminylamine
N4-(β-N-acetyl-D-glucosaminyl)-L-asparagine
isopentenyl diphosphate
(indol-3 yl)acetyl-CoA
(indol-3-yl)pyruvate
O-ureido-L-homoserine
N-carbamoyl-D-phenylglycine
D-phenylhydantoin
citrate
N-acetylglutamyl-phosphate
N-acetyl-L-glutamate 5-semialdehyde
2-maleylacetate
xanthine
2-dehydropantoate
(R)-pantothenate
α-ribazole 5'-phosphate
5,6-dimethylbenzimidazole
acetoacetate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
urocanate
4-imidazolone-5-propanoate
histidinol
urea-1-carboxylate
S-adenosyl 3-(methylsulfanyl)propylamine
L-arginino-succinate
canavaninosuccinate
coproporphyrinogen III
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
selenophosphate
4'-phosphopantetheine
(R)-4'-phosphopantothenoyl-L-cysteine
acetyl phosphate
(S)-dihydroorotate
orotidine 5'-phosphate
DNA without lesion
2-C-methyl-D-erythritol 4-phosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
nicotinate adenine dinucleotide
3-phosphooxypyruvate
4-amino-4-deoxychorismate
5-amino-6-(D-ribitylamino)uracil
1-deoxy-L-glycero-tetrulose 4-phosphate
prenyl diphosphate
5-(methylsulfanyl)-ribulose 1-phosphate
S-methyl-5-thio-α-D-ribose 1-phosphate
α-D-glucosamine 1-phosphate
(R)-4'-phosphopantothenate
lipid IVA
3-deoxy-D-manno-octulosonate 8-phosphate
3-deoxy-α-D-manno-2-octulosonate
lipid A disaccharide (E. coli)
lipid X
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
L-cysteinylglycine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
hypoglycin B
carbamate
L-citrulline
L-cysteine
L-methionine
L-phenylalanine
L-isoleucine
L-glutamate
L-glutamine
L-serine
glycine
L-tyrosine
L-alanine
L-proline
L-arginine
L-aspartate
L-asparagine
L-threonine
L-leucine
L-tryptophan
L-valine
L-histidine
L-glutamate-5-semialdehyde
S-adenosyl-L-methionine
hypoglycin A
L-canaline
L-ornithine
S-adenosyl-L-homocysteine
L-aspartate 4-semialdehyde
L-homoserine
L-homocysteine
O-phospho-L-homoserine
meso-diaminopimelate
L-2-amino-3-oxobutanoate
L-aspartyl-4-phosphate
O-acetyl-L-homoserine
trans-4-hydroxy-L-proline
formyl-L-isoglutamine
N-formimino-L-glutamate
N6,N6-dimethyl-L-arginine
N-carbamoyl-L-aspartate
3-phospho-L-serine
L,L-diaminopimelate
L-isoglutamine
D-proline
D-glutamate
D-alanine
β-alanine
trans-cinnamate
4-aminobenzoate
acetate
5-chloro-5-deoxy-D-ribonate
(R)-pantoate
orotate
(S)-1-pyrroline-5-carboxylate
laurate
stearate
butanoate
palmitate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
(R)-lactate
pyruvate
formate
propanoate
5-chloro-4-hydroxy-2-oxopentanoate
2-oxobutanoate
2-oxoglutarate
3-phenyl-2-oxopropanoate
cis-homoaconitate
(1R,2S)-homoisocitrate
(2R)-homocitrate
cis-aconitate
D-threo-isocitrate
chorismate
(3E)-2-oxohex-3-enedioate
fumarate
succinate
(S)-malate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
α-Kdo-(2→6)-lipid IVA
(2E,6E)-farnesyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
geranyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-heptaprenyl diphosphate
geranylgeranyl diphosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
1-palmitoyl-2-myristoyl phosphatidate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
dioleoyl phosphatidate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-oleoyl-sn-glycerol 3-phosphate
trehalose-cis-keto-mono-mycolate
6-O-cis-keto-mycolyl-trehalose 6-phosphate
α, α'-trehalose 6-α-mycolate
6-O-α-mycolyl-trehalose 6-phosphate
trehalose-trans-keto-mono-mycolate
6-O-trans-keto-mycolyl-trehalose 6-phosphate
trehalose-cis-methoxy-mono-mycolate
6-O-cis-methoxy-mycolyl-trehalose 6-phosphate
trehalose-trans-methoxy-mono-mycolate
6-O-trans-methoxy-mycolyl-trehalose 6-phosphate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
ADP-α-D-glucose
GDP-4-dehydro-α-D-rhamnose
GDP-α-D-mannose
GDP-α-D-glucose
GDP-β-L-fucose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-α-D-galactose
UDP-α-D-glucose
UDP-α-D-glucuronate
UDP-β-L-threo-pentapyranos-4-ulose
UDP-4-amino-4-deoxy-β-L-arabinopyranose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
α-D-mannose 1-phosphate
α-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
α-D-glucose 6-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-arabinofuranose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
α,α-trehalose 6-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
D-ribulose-1,5-bisphosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
D-glyceraldehyde
glycolaldehyde
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-D-glucosamine
glycerol
α,α-trehalose
maltopentaose
maltohexaose
maltotetraose
maltoheptaose
maltotriose
ethanol
acetaldehyde
diacetyl
acetone
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
adenine
guanine
AMP
IMP
XMP
GMP
ATP
GTP
ADP
GDP
dADP
dGDP
dGTP
dATP
hypoxanthine
adenosine
inosine
guanosine
xanthosine
2'-deoxyinosine
2'-deoxyguanosine
2'-deoxyadenosine
tetrahydromethanopterin
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydromonapterin
7,8-dihydroneopterin
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropteroate
5,10-methylene-tetrahydromethanopterin
7,8-dihydrofolate monoglutamate
reduced riboflavin
FMNH2
riboflavin
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
uracil
thymine
preQ1
dTTP
dTDP
dUDP
UDP
CTP
dCTP
UTP
dUTP
dCDP
dCMP
CDP
dTMP
dUMP
CMP
UMP
uridine
cytidine
2'-deoxyuridine
2'-deoxycytidine
thymidine
cob(I)alamin
adenosylcobalamin
sirohydrochlorin
cobyrinate
precorrin-8x
cobalt-precorrin-2
precorrin-2
precorrin-7
precorrin-6B
cobalt-precorrin-5A
cobalt-precorrin-4
precorrin-1
cobalt-precorrin-6A
cobalt-precorrin-5B
cobalt-precorrin-6B
cobalt-precorrin-8
cobalt-precorrin-7
cobalt-precorrin-3
coenzyme A
5'-deoxyadenosine
1-(5-phospho-β-D-ribosyl)-AMP
1-(5-phospho-β-D-ribosyl)-ATP
adenylo-succinate
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
ppGpp
pppGpp
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
cyclic di-3',5'-guanylate
NAD+
NADP+
NADH
NADPH
(S)-NADPHX
(R)-NADPHX
5'-deoxy-5'-fluoroadenosine
(S)-NADHX
(R)-NADHX
nicotinate
(indol-3-yl)acetate
acetyl-CoA
(E)-glutaconyl-CoA
succinyl-CoA
malonyl-CoA
isobutanoyl-CoA
3'-dephospho-CoA
oleoyl-CoA
palmitoleoyl-CoA
stearoyl-CoA
palmitoyl-CoA
myristoyl-CoA
cis-vaccenoyl-CoA
lauroyl-CoA
propanoyl-CoA
butanoyl-CoA
18-hydroxylinoleoyl-CoA
crotonyl-CoA
(R)-methylmalonyl-CoA
(S)-methylmalonyl-CoA
trans-dienelactone
cis-dienelactone
glutathione
(2R)-phospho-3-sulfolactate
3-sulfopyruvate
L-cysteate
(2R)-3-sulfolactate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
4-methyl-5-(2-phosphooxyethyl)thiazole
methanethiol
spermidine
putrescine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
2-iminopropanoate
sn-glycero-3-phosphoethanolamine
glycerophosphoserine
glycerophosphoglycerol
nitrate
hydrogencarbonate
selenate
selenite
selenide
chloride
phosphate
diphosphate
triphosphate
Mg2+
Co2+
Fe2+
Zn2+
Mo2+
K+
ammonium
H+
2-chloroacetate
preQ0
(indole-3-yl)acetonitrile
N-acetyl-β-neuraminate 9-phosphate
N-acetyl-D-mannosamine 6-phosphate
α-D-glucosamine 6-phosphate
(2R)-2,3-dihydroxy-3-methylbutanoate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
2-iminosuccinate
2-iminobutanoate
oxygen
hydrogen sulfide
Mg-protoporphyrin
protoporphyrin IX
uroporphyrinogen-III
uroporphyrinogen-I
protoporphyrinogen IX
siroheme
protoheme
cobalt-sirohydrochlorin
cob(II)yrinate a,c-diamide
cobalt-factor III
cob(II)yrinate c-monoamide
adenosylcobyrate
adenosyl-cob(III)yrinate a,c-diamide
ethylphosphate
DNA with lesion