an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
choline
H2O
CO2
coproporphyrinogen III
glycolate
5-amino-6-(D-ribitylamino)uracil
1-deoxy-L-glycero-tetrulose 4-phosphate
carbamoyl phosphate
urea-1-carboxylate
dethiobiotin
3-dehydroquinate
3-deoxy-D-arabino-heptulosonate 7-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate 3-phosphate
phosphoenolpyruvate
shikimate
3-dehydroshikimate
4-amino-4-deoxychorismate
(R)-pantothenate
β-nicotinate D-ribonucleotide
hydrogen peroxide
oxaloacetate
formamide
3-methyl-2-oxobutanoate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
isopentenyl diphosphate
(S)-dihydroorotate
L-arginino-succinate
canavaninosuccinate
O-ureido-L-homoserine
L-canavanine
2-dehydro-3-deoxy-D-gluconate 6-phosphate
D-gluconate 6-phosphate
glycerone phosphate
5-phospho-β-D-ribosylamine
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
acetoacetate
(E)-glutaconate
quinolinate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
acetyl phosphate
formate
carboxyphosphate
thiamine diphosphate
4'-phosphopantetheine
3-phosphooxypyruvate
carbon monoxide
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
urocanate
4-imidazolone-5-propanoate
DNA without lesion
(R)-4'-phosphopantothenate
nicotinate adenine dinucleotide
ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
citrate
γ-L-glutamyl 5-phosphate
N-ethylammeline
deethylsimazine
7,8-diaminopelargonate
prenyl diphosphate
5-phospho-α-D-ribose 1,2-cyclic phosphate
α-D-ribose-1-methylphosphonate 5-phosphate
chloramphenicol
O-acetyl-L-serine
lanthionine
2-C-methyl-D-erythritol 4-phosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
xanthine
orotidine 5'-phosphate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
N5-carboxyaminoimidazole ribonucleotide
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
isochorismate
5-(methylsulfanyl)-ribulose 1-phosphate
S-methyl-5-thio-α-D-ribose 1-phosphate
6-phospho D-glucono-1,5-lactone
urea
2-amino-3-carboxymuconate-6-semialdehyde
2-dehydropantoate
1,2-dihydro-β-NADP
enol-phenylpyruvate
ammonia
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
L-cysteinylglycine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
hypoglycin B
carbamate
L-citrulline
L-cysteine
L-methionine
L-aspartate
L-glutamate
L-glutamine
L-alanine
L-histidine
L-arginine
glycine
L-threonine
L-serine
L-tyrosine
L-proline
L-phenylalanine
L-leucine
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
hypoglycin A
O-succinyl-L-homoserine
L-homoserine
L-glutamate-5-semialdehyde
L-homocysteine
L-ornithine
meso-diaminopimelate
L-aspartyl-4-phosphate
O-acetyl-L-homoserine
trans-4-hydroxy-L-proline
formyl-L-isoglutamine
N-formimino-L-glutamate
N-carbamoyl-L-aspartate
(2S, 3S)-3-methylaspartate
3-phospho-L-serine
L-cystathionine
L-isoglutamine
D-glutamate
D-alanine
β-alanine
2,3-dihydroxybenzoate
4-aminobenzoate
(R)-pantoate
acetate
orotate
(S)-1-pyrroline-5-carboxylate
butanoate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
arachidonate
4-hydroxybutanoate
(R)-lactate
(R)-2-hydroxyglutarate
2-oxobutanoate
pyruvate
2-oxoglutarate
3-phenyl-2-oxopropanoate
chorismate
fumarate
succinate
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
(2E,6E)-farnesyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
geranyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-heptaprenyl diphosphate
geranylgeranyl diphosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
1-palmitoyl-2-myristoyl phosphatidate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
dioleoyl phosphatidate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-oleoyl-sn-glycerol 3-phosphate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
4-phospho-D-erythronate
D-sedoheptulose 7-phosphate
α-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
D-glyceraldehyde
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
glycerol
β-D-cellobiose
cellotetraose
butan-1-ol
ethanol
methylglyoxal
butan-1-al
acetaldehyde
adenine
guanine
GMP
AMP
XMP
IMP
ATP
GTP
ADP
GDP
dGDP
dADP
dGTP
dATP
hypoxanthine
inosine
adenosine
guanosine
xanthosine
2'-deoxyinosine
2'-deoxyadenosine
2'-deoxyguanosine
7,8-dihydroneopterin 3'-triphosphate
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
reduced riboflavin
FMNH2
riboflavin
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
uracil
thymine
preQ1
CTP
UTP
dUMP
dTMP
dCTP
dUTP
UDP
dUDP
CDP
dCDP
dTDP
dCMP
dTTP
UMP
CMP
uridine
cytidine
2'-deoxyuridine
thymidine
2'-deoxycytidine
sirohydrochlorin
precorrin-1
precorrin-2
coenzyme A
5'-deoxyadenosine
cyclic-AMP
pppGpp
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
adenylo-succinate
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
cyclic di-3',5'-guanylate
NADP+
NAD+
NADPH
NADH
5'-deoxy-5'-fluoroadenosine
glycine betaine
(S)-NADHX
(R)-NADHX
nicotinate
thiamine
cholate
glycocholate
methane
acetyl-CoA
2-methylacetoacetyl-CoA
isobutanoyl-CoA
4-hydroxybutanoyl-CoA
succinyl-CoA
(E)-glutaconyl-CoA
(R)-2-hydroxyglutaryl-CoA
3'-dephospho-CoA
malonyl-CoA
oleoyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
cis-vaccenoyl-CoA
propanoyl-CoA
butanoyl-CoA
18-hydroxylinoleoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
crotonyl-CoA
glutathione
(R)-S-lactoylglutathione
3-sulfopyruvate
L-cysteate
4-methyl-5-(2-phosphooxyethyl)thiazole
5-(2-hydroxyethyl)-4-methylthiazole
methanethiol
spermidine
putrescine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
2-iminopropanoate
nitrate
hydrogencarbonate
chloride
phosphonate
phosphate
diphosphate
triphosphate
Zn2+
Co2+
Fe2+
ammonium
H+
K+
Na+
2-chloroacetate
chloramphenicol 3-acetate
preQ0
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
2-iminobutanoate
2-iminosuccinate
oxygen
hydrogen sulfide
protoporphyrinogen IX
uroporphyrinogen-III
protoporphyrin IX
siroheme
protoheme
ethylphosphate
DNA with lesion