an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
carboxyphosphate
2-phosphoglycolate
3-deoxy-D-glycero-2,5-hexodiulosonate
N-acetylglutamyl-phosphate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N-acetyl-L-glutamate 5-semialdehyde
carbamoyl phosphate
(S)-2,3,4,5-tetrahydrodipicolinate
N-succinyl-2-amino-6-ketopimelate
4-methyl-2-oxopentanoate
oxalosuccinate
citrate
α-D-glucosamine 1-phosphate
glycerone phosphate
O-ureido-L-homoserine
canavaninosuccinate
L-arginino-succinate
DNA without lesion
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(S)-2-amino-6-oxohexanoate
2-dehydropantoate
nicotinate adenine dinucleotide
3-dehydro-2-deoxy-D-gluconate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine diphosphate
(S)-2-aceto-2-hydroxybutanoate
formate
(S)-2-acetolactate
CO2
prenyl diphosphate
D-gluconate 6-phosphate
prephenate
salicyl alcohol
γ-L-glutamyl 5-phosphate
shikimate
autoinducer 2
4'-phosphopantetheine
(R)-mevalonate diphosphate
3-dehydroshikimate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
L-canavanine
1-deoxy-L-glycero-tetrulose 4-phosphate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
(S)-dihydroorotate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
1-piperideine 6-carboxylate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
phosphoenolpyruvate
O-acetyl-L-serine
L-selenocystathionine
N-acetyl-D-muramate 6-phosphate
(R)-mevalonate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
1,3-propanediol
3-hydroxypropanal
N-succinyl-L,L-2,6-diaminopimelate
acetyl phosphate
β-nicotinate D-ribonucleotide
β-D-ribosylnicotinate
glycolate
3-oxopropanoate
4-aminobutanoate
succinate semialdehyde
oxaloacetate
S-ribosyl-L-homocysteine
H2O
quinolinate
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
urea
hydrogen peroxide
dihydroxyacetone
4-hydroxy-2-nonenal
coproporphyrinogen III
4-imidazolone-5-propanoate
urocanate
1,4-dihydroxy-2-naphthoate
5-methylcytosine
histidinal
histidinol
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
L-histidinol phosphate
anthranilate
N-(5-phosphoribosyl)-anthranilate
3-dehydroquinate
5-enolpyruvoyl-shikimate 3-phosphate
N5-carboxyaminoimidazole ribonucleotide
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
carbonic acid
(lipoyl)adenylate
3-phosphooxypyruvate
(2S)-2-isopropyl-3-oxosuccinate
3-ethylmalate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropylmalate
2-isopropylmaleate
citraconate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
(2R,3S)-3-methylmalate
xanthine
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
ManNAc-GlcNAc-PP-undecaprenol
3-deoxy-D-arabino-heptulosonate 7-phosphate
(R)-2,3-dihydroxy-3-methylpentanoate
5-amino-6-(D-ribitylamino)uracil
poly(ribitol phosphate)
O-D-alanyl-poly(ribitol phosphate)
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
isochorismate
choline
(indol-3-yl)pyruvate
ethanolamine
(R)-pantothenate
(R)-4'-phosphopantothenate
4-fumaryl-acetoacetate
2-deoxygluconate
2-dehydro-3-deoxy-D-gluconate
urea-1-carboxylate
4-amino-4-deoxychorismate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
(R)-5-phosphomevalonate
isopentenyl diphosphate
2-oxovalerate
β-D-fructose 2,6-bisphosphate
shikimate 3-phosphate
2-(α-hydroxyethyl)thiamine diphosphate
acetoacetate
orotidine 5'-phosphate
poly (glycerol phosphate)
o-(α-D-glucosyl)-polyglycerol phosphate
glutathione disulfide
2-keto-D-gluconate
2,5-didehydro-D-gluconate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
thiamine phosphate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
CDP-glycerol
1-phosphatidyl-myo-inositol
1-phosphatidyl-myo-inositol 2-mannose
propanoyl phosphate
5-phospho-β-D-ribosylamine
3-(all-trans-octaprenyl)benzene-1,2-diol
α-D-glucosamine 6-phosphate
DNA with lesion
ethylphosphate
(glutathion-S-yl)-4-hydroxy-2-nonenal
uroporphyrinogen-III
uroporphyrinogen-I
coproporphyrinogen I
hydrogen sulfide
oxygen
2-chloroacetate
2-iminopropanoate
2-iminosuccinate
2-iminobutanoate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
(2R)-2,3-dihydroxy-3-methylbutanoate
2-octaprenylphenol
2-methoxy-6-(all-trans-octaprenyl)phenol
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
(R)-citramalate
L-homocysteine
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
sn-glycerol 3-phosphate
preQ0
1-chloro-2,4-dinitrobenzene
2,4-dinitrophenyl-S-glutathione
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-deoxy-5'-fluoroadenosine
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5-chloro-4-hydroxy-2-oxopentanoate
5-chloro-5-deoxy-D-ribonate
Fe3+
ammonium
H+
Co2+
Ca2+
Mo2+
hydrogencarbonate
phosphonate
phosphate
diphosphate
chloride
(2E,6E)-farnesyl diphosphate
pristanate
glycerophosphoglycerol
sn-glycero-3-phosphoethanolamine
glycerophosphoserine
1-oleoyl-2-palmitoyl-phosphatidylglycerol
ferrichrome
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
putrescine
spermidine
glutathione
methanethiol
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
L-cysteate
3-sulfopyruvate
succinyl-CoA
malonyl-CoA
(+)-7-epi-jasmonoyl-CoA
acetyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
α-linolenoyl-CoA
linoleoyl-CoA
3'-dephospho-CoA
isobutanoyl-CoA
crotonyl-CoA
phytenoyl-CoA
oleoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
18-hydroxylinoleoyl-CoA
7-hydroxylauroyl-CoA
18-hydroxystearoyl-CoA
16-hydroxypalmitoyl-CoA
18-hydroxyoleoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(Z)-15-tetracosenoyl-CoA
propanoyl-CoA
butanoyl-CoA
octanoyl-CoA
lauroyl-CoA
decanoyl-CoA
cis-vaccenoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
stearoyl-CoA
palmitoyl-CoA
pristanoyl-CoA
acetoacetyl-CoA
(25S)-3-oxocholest-4-en-26-oate
(25S)-3-oxocholest-4-en-26-oyl-CoA
glycocholate
cholate
(+)-7-epi-jasmonate
nicotinate
thiamine
riboflavin
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
7,8-dihydrofolate monoglutamate
pyridoxal
pyridoxal 5'-phosphate
pyridoxine
pyridoxine 5'-phosphate
pyridoxamine
pyridoxamine 5'-phosphate
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADH
NADPH
NAD+
NADP+
ubiquinol-8
demethylmenaquinol-8
3-demethylubiquinol-8
glycine betaine
dGMP
dAMP
dATP
dGTP
GTP
dIDP
ITP
dITP
hypoxanthine
XMP
GMP
IMP
AMP
ATP
dADP
ADP
dGDP
GDP
adenylo-succinate
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
IDP
pppGpp
ppGpp
5-fluorocytosine
5-fluorouracil
xanthosine
guanosine
inosine
adenosine
uridine
cytidine
thymidine
2'-deoxyuridine
2'-deoxycytidine
cyclic di-3',5'-guanylate
5-hydroxy-CTP
5-hydroxy-CMP
dTTP
dUTP
dCTP
CTP
UTP
dCMP
dTMP
dUMP
UMP
CMP
dTDP
dUDP
dCDP
UDP
CDP
β-nicotinamide D-ribonucleotide
GDP-α-D-mannose
preQ1
uracil
cytosine
thymine
guanine
adenine
5,6-dihydrothymine
5,6-dihydrouracil
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-galactofuranose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
coenzyme A
(R)-lipoate
(S)-1-pyrroline-5-carboxylate
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
7,8-dihydroneopterin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydromonapterin
7,8-dihydropteroate
orotate
(+)-taxifolin
(+)-dihydrokaempferol
(2R,3S,4S)-leucocyanidin
(2R,3S,4S)-leucopelargonidin
4-hydroxybenzoate
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
hydroquinone
protocatechuate
catechol
2,3-dihydroxybenzoate
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
4-aminobenzoate
diacetyl
(R)-acetoin
(S)-acetoin
methylglyoxal
glycolaldehyde
acetaldehyde
butan-1-al
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
α-L-arabinopyranose
α-D-xylopyranose
α-D-glucopyranose
β-D-glucopyranose
α-D-galactopyranose
β-D-galactopyranose
methanol
ethanol
butan-1-ol
glycerol
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
aldehydo-D-galacturonate
octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside
octyl α-D-glucopyranoside
6G-kestotriose
1,1-kestotetraose
1-kestotriose
isoprimeverose
selaginose
raffinose
stachyose
sucrose
α,α-trehalose
keto-D-fructose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-glucosamine
D-xylulose
β-D-fructofuranose
4-deoxy-L-threo-hex-4-enopyranuronate
1-O-acetyl-α-maltose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
β-D-fructose 1,6-bisphosphate
salicin 6-phosphate
arbutin-6-phosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 1-phosphate
D-xylulose 5-phosphate
L-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-glucopyranose 1-phosphate
methyl β-D-glucoside 6-phosphate
D-mannonate
D-gluconate
18-hydroxystearate
16-hydroxypalmitate
18-hydroxyoleate
1-(oleoyl)-sn-glycero-3-phosphoethanolamine
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
geranyl diphosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
all-trans-octaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
ferric-enterobactin complex
iron(III) dicitrate
3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
chorismate
(3E)-2-oxohex-3-enedioate
fumarate
L-aspartate
succinate
(S)-malate
α,ω-9Z-octadecenedioate
(2S,3S)-2-methylcitrate
cis-aconitate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
3-oxoadipate
3-(4-hydroxyphenyl)pyruvate
3-phenyl-2-oxopropanoate
4-(methylsulfanyl)-2-oxobutanoate
2-oxoglutarate
pyruvate
2-oxobutanoate
butanoate
octanoate
7-hydroxylaurate
laurate
decanoate
(R)-lactate
(15Z)-tetracosenoate
oleate
α-linolenate
linoleate
stearate
palmitate
phytenate
(R)-pantoate
acetate
D-tagaturonate
carbamate
L-α-amino-ε-keto-pimelate
L-serine
L-tyrosine
L-cysteine
L-glutamine
glycine
L-threonine
L-arginine
L-lysine
L-histidine
L-glutamate
L-isoleucine
L-valine
L-proline
L-leucine
L-methionine
L-alanine
L-tryptophan
L-phenylalanine
β-alanine
D-glutamate
D-alanine
D-aspartate
L-ornithine
L-aspartyl-4-phosphate
L-cystathionine
L,L-diaminopimelate
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
L-saccharopine
seleno-L-homocysteine
3-phospho-L-serine
N-acetyl-L-methionine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
L-canaline
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
L-glutamate-5-semialdehyde
S-adenosyl-L-homocysteine
O-phospho-L-homoserine
L-homoserine
O-succinyl-L-homoserine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
γ-L-glutamyl-L-cysteine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine