an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
bisorganyltrisulfane
ammonia
enol-phenylpyruvate
S-(hydroxymethyl)mycothiol
1,2-dihydro-β-NADP
mycothione
mercuriphenyl acetate
3-dehydroshikimate
(S)-dihydroorotate
glutathione disulfide
L-histidinol phosphate
propanoyl phosphate
1-O-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol 3-phosphate
1-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol
N-Formyl-L-kynurenine
(R)-4'-phosphopantothenate
2-dehydropantoate
(R)-5-phosphomevalonate
hydroxyatrazine
ethylamine
3-dehydroquinate
(S)-2,3,4,5-tetrahydrodipicolinate
N-succinyl-2-amino-6-ketopimelate
2-iminoacetate
hydroxypyruvate
diethylthiophosphate
diethylphosphate
dimethylthiophosphate
2-pyrone-4,6-dicarboxylate
4-fumaryl-acetoacetate
selenophosphate
chlorite
coproporphyrinogen III
3-deoxy-D-arabino-heptulosonate 7-phosphate
N-isopropylammelide
isopropylamine
(R)-mevalonate
(R)-pantothenate
31-O-desmethylFK-506
FK-506
3-hydroxyanthranilate
ethanolamine
isochorismate
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
2-succinylbenzoate
porphobilinogen
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
L-canavanine
N-acetylglutamyl-phosphate
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
acetoacetate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
citraconate
(2R,3S)-3-methylmalate
(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate
(4Z)-2-oxohept-4-enedioate
O-acetyl-L-serine
3-ureidopropanoate
2-deoxygluconate
3-dehydro-2-deoxy-D-gluconate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
(4,5-dihydro-5-oxofuran-2-yl)-acetate
4-methyl-3-oxoadipate-enol-lactone
4-methyl-3-oxoadipate
4-prenylphlorisobutyrophenone
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
L-tartrate
meso-tartrate
2-hydroxy-3-oxosuccinate
4-guanidinobutanoate
urea
2-(α-hydroxyethyl)thiamine diphosphate
thiamine diphosphate
(R)-mevalonate diphosphate
prenyl diphosphate
poly (glycerol phosphate)
CDP-glycerol
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
orotidine 5'-phosphate
glycolate
hydrogen peroxide
L-selenocystathionine
anthranilate
1-(2-amino-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
glycerone phosphate
DNA without lesion
carbamoyl phosphate
carboxyphosphate
shikimate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
4-hydroxy-2-nonenal
carbonic acid
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
mycothiol-arsenate conjugate
N-succinyl-L,L-2,6-diaminopimelate
oxalosuccinate
isopentenyl diphosphate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
1,4-dihydroxy-2-naphthoyl-CoA
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
citrate
α-D-glucosamine 1-phosphate
L-arginino-succinate
O-ureido-L-homoserine
canavaninosuccinate
N-acetyl-L-glutamate 5-semialdehyde
N-(5-phosphoribosyl)-anthranilate
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
histidinal
histidinol
oxaloacetate
3-oxopropanoate
4-aminobutanoate
2,3-didehydroadipyl-CoA
3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA
(E)-4-coumaroyl-CoA
phosphoenolpyruvate
4-phosphooxy-L-threonine
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
3-amino-1-hydroxyacetone 1-phosphate
H2O
succinate semialdehyde
CO2
4-methylphenol
L-homocysteine
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
sn-glycerol 3-phosphate
sn-glycerol 1-phosphate
DNA with lesion
phenylacetate
ethylphosphate
uroporphyrinogen-III
uroporphyrinogen-I
coproporphyrinogen I
oxygen
Hg0
hydrogen sulfide
2-chloroacetate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
(2R)-2,3-dihydroxy-3-methylbutanoate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
CMP-N-acetyl-β-neuraminate
(R)-citramalate
(R)-methylmalonate-semialdehyde
(S)-methylmalonate-semialdehyde
(S)-2-hydroxyglutarate
hydrogen cyanide
parathion
paraoxon
4-nitrophenol
1-chloro-2,4-dinitrobenzene
2,4-dinitrophenyl-S-glutathione
N-acetyl-β-neuraminate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
Fe3+
ammonium
H+
Fe2+
Hg2+
Co2+
Zn2+
hydrogensulfite
OH-
molybdate
selenide
thiosulfate
sulfite
superoxide
hydrogencarbonate
arsenate
phosphonate
phosphate
triphosphate
diphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
pristanate
sn-glycero-3-phosphoethanolamine
glycerophosphoglycerol
glycerophosphoserine
glycine betaine
betaine aldehyde
2-iminopropanoate
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
S-(hydroxymethyl)glutathione
thiocyanate
deacetylmycothiol
glutathione
mycothiol
methanethiol
S-sulfanylglutathione
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
VAI-1
AAI-1
PAI-1-2
PAI-1
VAI-1-2
HAI-1
2-methylbutanoyl-CoA
isobutanoyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
succinyl-CoA
malonyl-CoA
linoleoyl-CoA
α-linolenoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA
(3S)-hydroxyadipyl-CoA
(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA
3-hydroxyisovaleryl-CoA
(E)-2-methylcrotonoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA
methylacrylyl-CoA
2-methylacetoacetyl-CoA
acetyl-CoA
(S)-methylmalonyl-CoA
crotonyl-CoA
phytenoyl-CoA
(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA
(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA
(2E)-dec-2-enoyl-CoA
(2E)-oct-2-enoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
oleoyl-CoA
7-hydroxylauroyl-CoA
18-hydroxystearoyl-CoA
16-hydroxypalmitoyl-CoA
18-hydroxyoleoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA
(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA
(S)-3-hydroxydecanoyl-CoA
(S)-3-hydroxyoctanoyl-CoA
(Z)-15-tetracosenoyl-CoA
propanoyl-CoA
decanoyl-CoA
lauroyl-CoA
octanoyl-CoA
stearoyl-CoA
palmitoyl-CoA
pristanoyl-CoA
3-oxoadipyl-CoA
4-methyl-3-oxoadipyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
(S)-3-hydroxy-isobutanoyl-CoA
(25S)-3-oxocholest-4-en-26-oate
(25S)-3-oxocholest-4-en-26-oyl-CoA
7,8-dihydrofolate monoglutamate
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
FAD
FADH2
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADPH
NADH
NADP+
NAD+
caldariellaquinone
caldariellaquinol
isoguanine
8-oxo-dGTP
8-oxo-GTP
hypoxanthine
cyclic-AMP
5'-deoxyadenosine
pppGpp
ppGpp
2'-deoxyguanosine
dIDP
dITP
ITP
IDP
GMP
XMP
IMP
adenylo-succinate
dATP
dADP
dGTP
dGDP
ADP
GTP
GDP
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
ATP
AMP
P1,P4-bis(5'-adenosyl) tetraphosphate
guanosine
cytidine
uridine
2'-deoxycytidine
2'-deoxyuridine
thymidine
2-hydroxy-dATP
5-hydroxy-CTP
dTTP
dCTP
dUTP
CTP
UTP
dTMP
dUMP
CMP
UMP
dTDP
dUDP
dCDP
UDP
CDP
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
ADP-α-D-glucose
N1-ethyladenine
N3-methylcytosine
N1-methyladenine
thymine
cytosine
uracil
guanine
adenine
5,6-dihydrouracil
5,6-dihydrothymine
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-glucosamine
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
molybdopterin
coenzyme A
MoO2-molybdopterin cofactor
(S)-1-pyrroline-5-carboxylate
hydantoin
(7,8-dihydropterin-6-yl)methyl diphosphate
molybdopterin adenine dinucleotide
cyclic pyranopterin phosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropteroate
orotate
benzene
actinorhodin intermediate
actinorhodin
cyanuric acid
atrazine
amino-parathion
methyl parathion
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
4-aminophenol
protocatechuate
8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol
enterobactin
dimeric urushiol peroxide
3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol
6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol
all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol
4-aminobenzoate
diacetyl
methylglyoxal
1-octanal
1-propanal
formaldehyde
acetaldehyde
D-glyceraldehyde
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
α-L-arabinopyranose
propan-1-ol
methanol
ethanol
1-octanol
glycerol
myo-inositol
1D-myo-inositol 4-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 2-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 5-monophosphate
1D-myo-inositol 3-monophosphate
(S)-propane-1,2-diol
maltotriose
maltotetraose
maltopentaose
maltoheptaose
maltohexaose
α,α-trehalose
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-α-D-mannosamine
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α,α-trehalose 6-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
5-phospho-α-D-ribose 1-diphosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-glucose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
18-hydroxystearate
16-hydroxypalmitate
18-hydroxyoleate
geranyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
5-deoxy-dihydrokalafungin
(S)-DNPA
2-((1R,3S),-1',9'-dihydroxy-1'-methyl-10'-oxo-3',4',5',10'-tetrahydro-1H-benzo[g]isochromen-3'-yl)acetate
phlorisovalerophenone
4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-oxobutanoate
(S)-4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-hydroxybutanoate
deoxyhumulone
deoxycohumulone
4-prenylphlorisovalerophenone
dihydrokalafungin
6-aminopenicillanate
isopenicillin N
penicillin G
3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
chorismate
succinate
fumarate
L-aspartate
(S)-malate
α,ω-9Z-octadecenedioate
3-(carbamoylamino)-2-methylpropanoate
(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate
3-carboxy-cis,cis-muconate
(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate
cis-aconitate
(2R,3S)-2-methylisocitrate
D-threo-isocitrate
3-oxoadipate
3-phenyl-2-oxopropanoate
pyruvate
glyoxylate
2-oxobutanoate
2-oxoglutarate
acetate
formate
propanoate
(R)-lactate
decanoate
7-hydroxylaurate
laurate
octanoate
(R)-3-hydroxybutanoate
(15Z)-tetracosenoate
(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate
(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate
(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate
(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate
(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate
(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate
linoleate
α-linolenate
stearate
palmitate
oleate
phytenate
(R)-pantoate
L-α-amino-ε-keto-pimelate
L-2-aminoadipate
L-kynurenine
carbamate
D-serine
L-serine
L-cysteine
L-tyrosine
glycine
L-glutamine
L-threonine
L-lysine
L-arginine
L-histidine
L-glutamate
L-methionine
L-phenylalanine
L-proline
L-leucine
L-alanine
L-tryptophan
L-isoleucine
L-valine
β-alanine
(R)-3-amino-2-methylpropanoate
(S)-3-amino-2-methylpropanoate
D-glutamate
D-alanine
L-ornithine
L-aspartyl-4-phosphate
L-cystathionine
L,L-diaminopimelate
L-2,4-diaminobutanoate
N-carbamoyl-L-aspartate
N-(3-oxohexanoyl)-L-homoserine
N-(3-oxooctanoyl)-L-homoserine
N-(butyryl)-L-homoserine
N-(3-oxododecanoyl)-L-homoserine
N-(octanoyl)-L-homoserine
N-(3-hydroxybutanoyl)-L-homoserine
N-acetyl-L-ornithine
seleno-L-homocysteine
N-carbamoylglycine
N-acetyl-L-glutamate
N-acetyl-L-methionine
3-hydroxy-L-kynurenine
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
L-glutamate-5-semialdehyde
L-homoserine
L-canaline
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
1-aminocyclopropane-1-carboxylate
L-aspartate 4-semialdehyde
O-phospho-L-homoserine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
(glutathion-S-yl)-4-hydroxy-2-nonenal
(S)-3-hydroxy-isobutanoate
2-iminobutanoate