an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
β-nicotinate D-ribonucleotide
pimeloyl-CoA
8-amino-7-oxononanoate
L-arginino-succinate
O-ureido-L-homoserine
canavaninosuccinate
N-acetyl-L-glutamate 5-semialdehyde
4'-phosphopantetheine
glycerone phosphate
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
adenosine 5'-phosphoselenate
adenosine 5'-phosphosulfate
4-imidazolone-5-propanoate
urocanate
3-dehydroquinate
3-dehydroshikimate
(S)-dihydroorotate
formate
1-deoxy-L-glycero-tetrulose 4-phosphate
poly(ribitol phosphate)
O-D-alanyl-poly(ribitol phosphate)
oxalosuccinate
succinate semialdehyde
N-succinyl-L,L-2,6-diaminopimelate
N-succinyl-2-amino-6-ketopimelate
(R)-pantothenate
(R)-4'-phosphopantothenate
α-D-glucosamine 1-phosphate
oxaloacetate
citrate
dihydroxyacetone
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
1,4-dihydroxy-2-naphthoyl-CoA
N-(5-phosphoribosyl)-anthranilate
CO2
phosphoenolpyruvate
isopentenyl diphosphate
H2O
nicotinate adenine dinucleotide
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
4-oxoglutaramate
S-ribosyl-L-homocysteine
autoinducer 2
anthranilate
selenodiglutathione
glutathioselenol
1,4-dihydroxy-2-naphthoate
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
3-amino-1-hydroxyacetone 1-phosphate
glutathione disulfide
formamide
urea
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
hydrogen selenide
O-acetyl-L-serine
4-amino-4-deoxychorismate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
L-canavanine
N-acetylglutamyl-phosphate
citraconate
(2R,3S)-3-methylmalate
quinolinate
orotidine 5'-phosphate
shikimate
carbamoyl phosphate
carboxyphosphate
(R)-4'-phosphopantothenoyl-L-cysteine
DNA without lesion
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
glycolate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
2-iminoacetate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
carbon monoxide
L-histidinol phosphate
(S)-2,3,4,5-tetrahydrodipicolinate
(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate
(4Z)-2-oxohept-4-enedioate
3-hydroxypropanoate
urea-1-carboxylate
ethanolamine
prephenate
2-dehydropantoate
3-phosphooxypyruvate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
4-phosphooxy-L-threonine
(2S)-4-acetamido-2-aminobutanoate
ectoine
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
porphobilinogen
coproporphyrinogen III
4-hydroxy-2-nonenal
2-succinylbenzoate
isochorismate
2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate
prenyl diphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-C-methyl-D-erythritol 4-phosphate
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
histidinal
histidinol
3-deoxy-D-arabino-heptulosonate 7-phosphate
hydrogen peroxide
2-(α-hydroxyethyl)thiamine diphosphate
thiamine diphosphate
salicyl alcohol
methylsalicylate
γ-L-glutamyl 5-phosphate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
(glutathion-S-yl)-4-hydroxy-2-nonenal
DNA with lesion
L-homocysteine
4-methylphenol
uroporphyrinogen-I
coproporphyrinogen I
uroporphyrinogen-III
protoporphyrinogen IX
protoporphyrin IX
oxygen
hydrogen sulfide
2-iminosuccinate
2-iminopropanoate
2-iminobutanoate
2-chloroacetate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-O-(α-D-glucopyranosyl)-D-glycerate
2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate
2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate
2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2R)-2,3-dihydroxy-3-methylbutanoate
(R)-citramalate
(S)-3-hydroxy-isobutanoate
1-chloro-2,4-dinitrobenzene
2,4-dinitrophenyl-S-glutathione
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
Fe3+
H+
ammonium
Zn2+
Fe2+
selenate
sulfate
selenite
OH-
superoxide
hydrogencarbonate
molybdate
phosphonate
phosphate
diphosphate
triphosphate
chloride
D-alanyl-D-alanine
hydroxyl radical
(2E,6E)-farnesyl diphosphate
pristanate
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
S-(hydroxymethyl)glutathione
methanethiol
glutathione
taurine
trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate
all-trans-retinyl palmitate
3'-dephospho-CoA
α-linolenoyl-CoA
linoleoyl-CoA
2-methylacetoacetyl-CoA
acetyl-CoA
(+)-7-epi-jasmonoyl-CoA
succinyl-CoA
3-hydroxypropanoyl-CoA
malonyl-CoA
6-trans-tridecenoyl-CoA
2-trans-6-trans-tridecadienoyl-CoA
4-cis-undecenoyl-CoA
2-trans, 4-cis-undecadienoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA
6-cis-tridecenoyl-CoA
2-trans,6-cis-tridecadienoyl-CoA
(5Z)-tetradecenoyl-CoA
(2E,5Z)-tetradecenoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA
5-cis, 7-trans-tetradecadienoyl-CoA
2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA
4-trans-undecenoyl-CoA
2-trans, 4-trans-undecadienoyl-CoA
(S)-methylmalonyl-CoA
phytenoyl-CoA
(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA
(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA
(2E)-oct-2-enoyl-CoA
oleoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
7-hydroxylauroyl-CoA
18-hydroxylinoleoyl-CoA
18-hydroxyoleoyl-CoA
16-hydroxypalmitoyl-CoA
18-hydroxystearoyl-CoA
(Z)-15-tetracosenoyl-CoA
(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA
(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA
propanoyl-CoA
decanoyl-CoA
octanoyl-CoA
lauroyl-CoA
palmitoyl-CoA
stearoyl-CoA
cis-vaccenoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
pristanoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
(S)-3-hydroxy-isobutanoyl-CoA
(25S)-3-oxocholest-4-en-26-oate
(25S)-3-oxocholest-4-en-26-oyl-CoA
(+)-7-epi-jasmonate
methyl (indol-3-yl)acetate
(indol-3-yl)acetate
nicotinate
thiamine
riboflavin
all-trans-retinol
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxal 5'-phosphate
pyridoxine 5'-phosphate
pyridoxamine
pyridoxamine 5'-phosphate
FMN
(R)-NADHX
(S)-NADHX
NADH
NADPH
NADP+
NAD+
caldariellaquinone
caldariellaquinol
ubiquinol-8
menaquinol-8
demethylmenaquinol-8
3-demethylubiquinol-8
glycine betaine
adenylo-succinate
ITP
IDP
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
5'-deoxyadenosine
IMP
XMP
GMP
dATP
dGTP
GTP
dADP
ADP
dGDP
GDP
ATP
AMP
isoguanine
8-oxo-dGTP
8-oxo-GTP
hypoxanthine
cyclic-AMP
pppGpp
ppGpp
2'-deoxyguanosine
dIDP
dITP
adenosine
guanosine
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CTP
5-hydroxy-CMP
dTTP
dUTP
dCTP
CTP
UTP
dUMP
dTMP
dCMP
UMP
CMP
dUDP
dCDP
dTDP
UDP
CDP
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
GDP-α-D-mannose
GDP-α-D-glucose
ADP-α-D-glucose
uracil
guanine
adenine
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-α-D-glucuronate
UDP-α-D-galactofuranose
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
coenzyme A
molybdopterin
MoO2-molybdopterin cofactor
(S)-1-pyrroline-5-carboxylate
7,8-dihydroneopterin 3'-triphosphate
cyclic pyranopterin phosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
molybdopterin adenine dinucleotide
orotate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
salicylate
4-aminobenzoate
diacetyl
glycolaldehyde
acetaldehyde
formaldehyde
D-glyceraldehyde
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
α-L-arabinopyranose
α-D-galactopyranose
ethanol
methanol
glycerol
1D-myo-inositol 3-monophosphate
maltotriose
maltotetraose
maltoheptaose
maltohexaose
maltopentaose
α,α-trehalose
N-acetyl-α-D-glucosamine 1-phosphate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α,α-trehalose 6-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
4-phospho-D-erythronate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
α-D-mannose 1-phosphate
18-hydroxyoleate
16-hydroxypalmitate
18-hydroxystearate
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
chorismate
L-aspartate
succinate
fumarate
(S)-malate
α,ω-9Z-octadecenedioate
cis-aconitate
(2R,3S)-2-methylisocitrate
D-threo-isocitrate
2-oxobutanoate
glyoxylate
2-oxoglutarate
pyruvate
decanoate
octanoate
laurate
7-hydroxylaurate
(15Z)-tetracosenoate
oleate
palmitate
stearate
α-linolenate
linoleate
phytenate
acetate
(R)-pantoate
L-α-amino-ε-keto-pimelate
carbamate
L-serine
L-glutamine
glycine
L-threonine
L-cysteine
L-tyrosine
L-lysine
L-arginine
L-histidine
L-glutamate
L-valine
L-alanine
L-tryptophan
L-isoleucine
L-methionine
L-leucine
L-proline
β-alanine
D-glutamate
D-alanine
L-isoglutamine
L-2,4-diaminobutanoate
L-ornithine
L-aspartyl-4-phosphate
L,L-diaminopimelate
N-carbamoyl-L-aspartate
formyl-L-isoglutamine
N-formimino-L-glutamate
N-acetyl-L-ornithine
N-acetyl-L-citrulline
seleno-L-homocysteine
L-selenomethionine
3-phospho-L-serine
N-acetyl-L-glutamate
N-acetyl-L-methionine
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
O-phospho-L-homoserine
L-glutamate-5-semialdehyde
L-canaline
L-homoserine
L-aspartate 4-semialdehyde
meso-diaminopimelate