an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

selenodiglutathione

glutathioselenol

homogentisate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

acetoacetate

hydrogen selenide

prephytoene diphosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

1,6-anhydro-N-acetyl-β-muramate

3-dehydroshikimate

3-dehydroquinate

2-amino-3-carboxymuconate-6-semialdehyde

S-ribosyl-L-homocysteine

autoinducer 2

anthranilate

N-(5-phosphoribosyl)-anthranilate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

succinate semialdehyde

α-ribazole

α-ribazole 5'-phosphate

nicotinate adenine dinucleotide

hydrogenobyrinate a,c-diamide

histidinal

histidinol

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

γ-L-glutamyl 5-phosphate

β-nicotinate D-ribonucleotide

7-carboxy-7-deazaguanine

orotidine 5'-phosphate

dihydroxyacetone

propanoyl phosphate

α-D-glucosamine 1-phosphate

glutathione disulfide

preuroporphyrinogen

2-maleylacetate

D-erythro-imidazole-glycerol-phosphate

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

hydrogen peroxide

1,4-dihydroxy-2-naphthoate

prephenate

creatinine

acetyl phosphate

5-amino-6-(D-ribitylamino)uracil

shikimate

salicyl alcohol

methylsalicylate

N-acetyl-D-muramate 6-phosphate

4-amino-4-deoxychorismate

quinolinate

coenzyme B

methanophenazine

CoB-CoM heterodisulfide

dihydromethanophenazine

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

3-phosphooxypyruvate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-iminoacetate

glycolate

2-phosphoglycolate

O-acetyl-L-serine

porphobilinogen

S-methyl-5'-thioadenosine

3-hydroxypropanoate

octadecanal

2-(α-hydroxyethyl)thiamine diphosphate

4'-phosphopantetheine

6-phospho D-glucono-1,5-lactone

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

coproporphyrinogen III

4-methyl-2-oxopentanoate

thiamine phosphate

thiamine diphosphate

2-O-(α-D-glucopyranosyl)-sn-glycerol 3-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

citraconate

(2R,3S)-3-methylmalate

4-hydroxy-2-nonenal

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

DNA without lesion

5-methylcytosine

adenosine 5'-phosphoselenate

2-C-methyl-D-erythritol 4-phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-oxopropanoate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

1-deoxy-L-glycero-tetrulose 4-phosphate

3-methyl-2-oxobutanoate

phosphoenolpyruvate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

(S)-dihydroorotate

D-gluconate 6-phosphate

carbamoyl phosphate

carboxyphosphate

oxalosuccinate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

hydrogenobyrinate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

O-ureido-L-homoserine

5-phospho-β-D-ribosylamine

oxaloacetate

citrate

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

L-arginino-succinate

canavaninosuccinate

L-canavanine

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

urea

CO₂

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

H₂O

glycerone phosphate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cobalt-precorrin-6B

cobalt-precorrin-6A

chlorophyllide a

protochlorophyllide a

3,8-divinyl chlorophyllide a

Mg-protoporphyrin

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

magnesium-protoporphyrin IX 13-monomethyl ester

protoheme

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminobutanoate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

(R)-citramalate

2-methoxy-6-(all-trans-octaprenyl)phenol

preQ₀

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

Fe³⁺

H⁺

ammonium

Fe²⁺

Mg²⁺

Co²⁺

hydrogensulfite

selenite

OH^-

nitrate

molybdate

superoxide

thiosulfate

sulfite

selenate

nitrite

hydrogencarbonate

sulfate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

sn-glycero-3-phosphoethanolamine

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

S-(hydroxymethyl)glutathione

thiocyanate

methanethiol

glutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

coenzyme M

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

succinyl-CoA

3-hydroxypropanoyl-CoA

3'-dephospho-CoA

malonyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

heptadecane

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

riboflavin

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

menadione

δ-tocotrienol

γ-tocotrienol

β-tocopherol

α-tocopherol

δ-tocopherol

γ-tocopherol

FAD

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

demethylmenaquinol-8

isoguanine

8-oxo-dGTP

8-oxo-GTP

dIDP

dITP

IDP

ITP

ppGpp

2'-deoxyadenosine

2'-deoxyinosine

pppGpp

cyclic-GMP

5'-deoxyadenosine

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

dATP

dADP

dGTP

dGDP

IMP

XMP

GMP

adenylo-succinate

GTP

GDP

AMP

ADP

ATP

5-fluorocytosine

5-fluorouracil

(R)-NADPHX

(S)-NADPHX

inosine

adenosine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

CTP

UTP

dCMP

dUMP

dTMP

CMP

UMP

dCDP

dUDP

dTDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

ADP-α-D-glucose

preQ₁

cytosine

uracil

thymine

adenine

UDP-α-D-glucose

CDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucuronate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-3,6-dideoxy-D-glycero-4-hexulose

CDP-ascarylose

molybdopterin

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-6B

precorrin-7

precorrin-3B

precorrin-3A

precorrin-1

precorrin-2

precorrin-8x

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

orotate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

dimeric urushiol peroxide

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

2-methyl-6-geranylgeranyl-1,4-benzoquinol

2-methyl-6-phytyl-1,4-benzoquinol

2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinol

2,3-dimethyl-6-phytyl-1,4-benzoquinol

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

salicylate

4-aminobenzoate

diacetyl

methylglyoxal

glycolaldehyde

butan-1-al

formaldehyde

acetaldehyde

D-glyceraldehyde

α-D-ribofuranose

butan-1-ol

methanol

ethanol

glycerol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

D-sedoheptulose 1,7-bisphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

geranyl diphosphate

9,15,9'-tri-cis-ζ-carotene

15-cis-phytoene

9,9'-di-cis-ζ-carotene

prolycopene

all-trans-lycopene

phytyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

chorismate

succinate

L-aspartate

fumarate

(S)-malate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

acetate

formate

(R)-lactate

butanoate

palmitate

oleate

carbamate

L-serine

L-tyrosine

L-asparagine

glycine

L-threonine

L-glutamine

L-cysteine

L-histidine

L-arginine

L-glutamate

L-isoleucine

L-leucine

L-valine

L-proline

L-alanine

L-phenylalanine

L-tryptophan

L-methionine

creatine

β-alanine

D-glutamate

D-alanine

L-aspartyl-4-phosphate

L-ornithine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

3-phospho-L-serine

sarcosine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-homoserine

L-glutamate-5-semialdehyde

L-canaline

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine