an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

S-ribosyl-L-homocysteine

autoinducer 2

(R)-4'-phosphopantothenate

5,6-dimethylbenzimidazole

dialurate

(R)-1-amino-2-propanol O-2-phosphate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

(S)-4-hydroxy-2-oxopentanoate

urocanate

2-dehydro-3-deoxy-D-gluconate

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

2-dehydro-3-deoxy-D-galactonate

(S)-5-hydroxyisourate

xanthine

aminoacetone

(R)-5-phosphomevalonate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

4-(β-D-ribofuranosyl)hydroxybenzene 5'-phosphate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

quinolinate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

3-oxopropanoate

N-methylhydantoin

3-ureidopropanoate

3-phosphooxypyruvate

deethylsimazine

N-ethylammeline

pimeloyl-CoA

8-amino-7-oxononanoate

7,8-diaminopelargonate

dethiobiotin

5-carboxymethyl-2-hydroxymuconate

4-hydroxy-2-nonenal

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

acetyl phosphate

α-D-glucosamine 1-phosphate

prephenate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

citraconate

(2R,3S)-3-methylmalate

2-phosphoglycolate

S-adenosyl 3-(methylsulfanyl)propylamine

4-fumaryl-acetoacetate

(R)-1-aminopropan-2-ol

α-ribazole

α-ribazole 5'-phosphate

urea-1-carboxylate

carbonic acid

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

acetoacetate

DNA without lesion

orotidine 5'-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

chlorite

thiamine phosphate

thiamine diphosphate

5-oxo-L-proline

2-succinylbenzoate

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

isochorismate

mesaconate

4-prenylphlorisobutyrophenone

prenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

N²-succinylglutamate

hydrogen peroxide

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

4,8,12-trimethyltridecanoyl-CoA

3-oxopristanoyl-CoA

α-D-ribose 1,5-bisphosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

1-deoxy-L-glycero-tetrulose 4-phosphate

pregn-5-ene-3,20-dione-17-ol

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

pregn-5-ene-3,20-dione

5-androstene-3,17-dione

(R)-mevalonate diphosphate

isopentenyl diphosphate

succinate semialdehyde

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

N-succinyl-L,L-2,6-diaminopimelate

hydroxypyruvate

formamide

7,8-didemethyl-8-hydroxy-5-deazariboflavin

oxalate

(2S)-lactyl-2-diphospho-5'-guanosine

hydrogen selenide

O-acetyl-L-serine

(S)-mandelate

(R)-mandelate

(R)-4'-phosphopantothenoyl-L-cysteine

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

formate

carbon monoxide

(S)-2-amino-6-oxohexanoate

4-amino-4-deoxychorismate

glycolate

(R)-mevalonate

oxalosuccinate

salicyl alcohol

methylsalicylate

coproporphyrinogen III

urea

L-histidinol phosphate

2-dehydropantoate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

preuroporphyrinogen

5-aminolevulinate

porphobilinogen

O-ureido-L-homoserine

L-arginino-succinate

canavaninosuccinate

L-canavanine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

1,2-dichloroethane

2-chloroethanol

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(S)-dihydroorotate

N-(5-phosphoribosyl)-anthranilate

anthranilate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

γ-L-glutamyl 5-phosphate

(S)-4-amino-5-oxopentanoate

4'-phosphopantetheine

citrate

5-amino-6-(D-ribitylamino)uracil

carboxyphosphate

ethanolamine

histidinal

histidinol

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

carbamoyl phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

oxaloacetate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

shikimate

3-dehydroshikimate

phosphoenolpyruvate

CO₂

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

glycerone phosphate

H₂O

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

(R)-4-phosphopantoate

6,7-dimethyl-8-(1-D-ribityl)lumazine

FAD

FMN

riboflavin

reduced riboflavin

FMNH₂

7,8-dihydroneopterin 3'-triphosphate

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

tetrahydromethanopterin

5,10-methenyltetrahydromethanopterin

5-formyl-tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

adenosine

hypoxanthine

dITP

dATP

dGTP

dIDP

dADP

dGDP

IDP

ADP

GDP

ITP

GTP

ATP

IMP

XMP

GMP

AMP

(S)-1-pyrroline-5-carboxylate

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-5A

precorrin-2

precorrin-1

precorrin-6B

precorrin-7

precorrin-8x

cobalt-precorrin-4

precorrin-3B

precorrin-4

cobalt-precorrin-2

cobalt-precorrin-3

sirohydrochlorin

cobyrinate

adenosylcobalamin

hydantoin

5,6-dihydrouracil

5,6-dihydrothymine

dUMP

dTTP

dUDP

uracil

orotate

dCTP

dUTP

CDP

dCMP

dCDP

UTP

CTP

UDP

dTMP

dTDP

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

thymidine

2'-deoxycytidine

2'-deoxyuridine

cytidine

uridine

thymine

CMP

UMP

urate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicylate

4-aminobenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,5-dichlorophenol

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

tyramine

caldariellaquinol

demethylmenaquinol-8

D-glyceraldehyde

β-D-ribopyranose

β-D-galactopyranose

formaldehyde

acetaldehyde

methylglyoxal

diacetyl

acetone

caldariellaquinone

ethanol

methanol

glycerol

myo-inositol

phytate

D-myo-inositol (1,2,3,5,6) pentakisphosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

L-xylulose

keto-D-fructose

β-D-fructofuranose

N-acetyl-α-D-glucosamine 1-phosphate

D-ribulose-1,5-bisphosphate

α,α-trehalose 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

GDP-α-D-mannose

ADP-D-ribose

ADP ribose 1'',2''-cyclic phosphate

ADP ribose 1''-phosphate

α,α-trehalose

D-mannonate

D-galactonate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

saturated CDP-archaeol

unsaturated CDP-archaeol

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

tributyrin

1,2-dibutyrin

geranyl diphosphate

(2E,6E)-farnesyl diphosphate

sitosterol

3-oxo-24-ethyl-cholest-5-ene

phytyl diphosphate

all-trans-retinol

all-trans-retinyl palmitate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

phlorisovalerophenone

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-chloro-5-deoxy-D-ribonate

(R)-pantoate

acetate

carbamate

L-citrulline

L-canaline

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

L-ornithine

L-homocysteine

L-glutamate-5-semialdehyde

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-lysine

L-selenocysteine

L-isoleucine

L-valine

L-leucine

L-arginine

L-alanine

L-asparagine

L-threonine

L-proline

L-histidine

glycine

L-phenylalanine

L-glutamine

L-glutamate

L-aspartate

L-tyrosine

L-serine

L-tryptophan

L-methionine

L-cysteine

N-carbamoylsarcosine

creatine

β-alanine

D-proline

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-aspartate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

L-2-amino-3-oxobutanoate

L-saccharopine

3-phospho-L-serine

(2S, 3S)-3-methylaspartate

sarcosine

N-carbamoylglycine

N-acetyl-L-glutamate

N⁶-hydroxy-L-lysine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

(S)-malate

α,ω-9Z-octadecenedioate

3-(carbamoylamino)-2-methylpropanoate

cis-2-methylaconitate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(2S,3S)-2-methylcitrate

cis-aconitate

D-threo-isocitrate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

5-chloro-4-hydroxy-2-oxopentanoate

2-oxobutanoate

2-oxoglutarate

pyruvate

butanoate

octanoate

7-hydroxylaurate

laurate

decanoate

(R)-glycerate

(S)-lactate

(R)-lactate

(15Z)-tetracosenoate

oleate

α-linolenate

linoleate

stearate

pristanate

palmitate

phytenate

γ-L-glutamyl-L-cysteine

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

hydrogen cyanide

adenosyl-cobinamide phosphate

cob(I)yrinate a,c-diamide

cob(I)inamide

cob(I)alamin

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobinamide

adenosylcobyrate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobalt-sirohydrochlorin

cobalt-factor III

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

siroheme

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

ω-saturated C55 dolichol phosphate

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

(R)-citramalate

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

(indole-3-yl)acetonitrile

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

Fe³⁺

H⁺

Na⁺

ammonium

Co²⁺

Fe²⁺

Cd²⁺

Cu²⁺

superoxide

selenite

selenate

sulfite

thiosulfate

hydrogencarbonate

nitrate

hydrogensulfite

phosphonate

phosphate

triphosphate

diphosphate

chloride

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

spermine

putrescine

dehydrospermidine

spermidine

glutathione

thiocyanate

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(2R,3S)-β-methylmalyl-CoA

2-methylfumaryl-CoA

formyl-CoA

oxalyl-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

CoA-disulfide

α-linolenoyl-CoA

linoleoyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

choloyl-CoA

chenodeoxycholoyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

succinyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

phytenoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

methane

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

pregnenolone

3-β-hydroxyandrost-5-en-17-one

cholesterol

cholest-5-en-3-one

17-α-hydroxypregnenolone

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

nicotinate

thiamine

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

glycine betaine

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

adenylo-succinate

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

coenzyme A

oxidized coenzyme F₄₂₀-0