an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(R)-4'-phosphopantothenate

2-oxoglutaramate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

carbon monoxide

secologanin

tryptamine

3-α(S)-strictosidine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

4-amino-2-methyl-5-pyrimidinemethanol

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

1,6-anhydro-N-acetyl-β-muramate

L-gulono-1,4-lactone

N-ethylmaleimide

N-ethylsuccinimide

S-formylglutathione

2-maleylacetate

5'-phosphoguanylyl(3'→5')guanosine

formamide

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

urea-1-carboxylate

(2S)-4-acetamido-2-aminobutanoate

ectoine

7-carboxy-7-deazaguanine

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

cyclohexanone

ε-caprolactone

4-methyl-3-oxoadipate

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

2-O-(α-D-glucopyranosyl)-sn-glycerol 3-phosphate

D-galacto-hexodialdose

3-mercaptopyruvate

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

2-oleoylglycerol

(R)-4'-phosphopantothenoyl-L-cysteine

4-acetamidobutanal

4-acetamidobutanoate

(2E)-hexadecenal

3,4-dihydroxyphenylacetaldehyde

D-glucurono-6,3-lactone

imidazole acetaldehyde

4-imidazoleacetate

dimethylsulfoniopropanoate

prop-2-ynal

propynoate

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

L-β-lysine

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

selenophosphate

N-(5-phosphoribosyl)-anthranilate

coenzyme F₃₉₀-A

lipid IV_A

thiamine diphosphate

thiamine phosphate

4-amino-4-deoxychorismate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

5-amino-6-(D-ribitylamino)uracil

α-D-galactosyl-diphosphoundecaprenol

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

(enterobacterial common antigen)-undecaprenyl diphosphate

histidinal

histidinol

3-deoxy-α-D-manno-2-octulosonate

N-acetyl-D-muramate 6-phosphate

pimeloyl-CoA

dethiobiotin

5-guanidino-2-oxopentanoate

tartronate semialdehyde

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

(4S)-4-hydroxy-2-oxoheptanedioate

5-carboxymethyl-2-hydroxymuconate

2-hydroxy-5-carboxymethylmuconate semialdehyde

hydroxypyruvate

isoquinoline

isoquinolin-2(1H)-one

xanthine

5-(methylsulfanyl)-ribulose 1-phosphate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

quinolinate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

prephenate

orotidine 5'-phosphate

shikimate

3-dehydroshikimate

L-quinate

3-dehydroquinate

propanoyl phosphate

DNA without lesion

2-phosphoglycolate

glycolate

deethylsimazine

N-ethylammeline

N¹-(5-phospho-β-D-ribosyl)glycinamide

salicyl alcohol

methylsalicylate

N²-succinyl-L-glutamate 5-semialdehyde

β-D-ribosylnicotinate

citraconate

(2R,3S)-3-methylmalate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

lipid X

lipid A disaccharide (E. coli)

N²-succinylglutamate

O-ureido-L-homoserine

3-amino-1-hydroxyacetone 1-phosphate

palmitaldehyde

2-keto-D-gluconate

2,5-didehydro-D-gluconate

3-oxopropanoate

all-trans-13,14-dihydroretinol

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

nicotinate adenine dinucleotide

hydrogen selenide

O-acetyl-L-serine

4-hydroxy-2-nonenal

(indol-3-yl)pyruvate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

carbonic acid

isopentenyl diphosphate

prenyl diphosphate

preuroporphyrinogen

L-arginino-succinate

canavaninosuccinate

L-canavanine

S-methyl-5'-thioadenosine

(R)-pantothenate

2-dehydropantoate

(S)-4-amino-5-oxopentanoate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

coproporphyrinogen III

acetoacetate

4-aminobutanoate

succinate semialdehyde

4'-phosphopantetheine

5-aminolevulinate

porphobilinogen

anthranilate

S-adenosyl 3-(methylsulfanyl)propylamine

D-erythro-imidazole-glycerol-phosphate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

α-D-glucosamine 1-phosphate

carbamoyl phosphate

carboxyphosphate

(S)-2,3,4,5-tetrahydrodipicolinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-phospho-β-D-ribosylamine

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

adenosine 3',5'-bisphosphate

3'-phosphoadenylyl-sulfate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

glycerone phosphate

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

citrate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

β-nicotinate D-ribonucleotide

ethanolamine

urea

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

3-deoxy-D-manno-octulosonate 8-phosphate

2-C-methyl-D-erythritol 4-phosphate

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

imidazole acetol-phosphate

L-histidinol phosphate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

acetyl phosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(S)-dihydroorotate

3-demethylubiquinol-6

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

oxalosuccinate

hydrogen peroxide

oxaloacetate

phosphoenolpyruvate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

γ-L-glutamyl 5-phosphate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

CO₂

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

1,2-dichloroethane

2-chloroethanol

H₂O

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

1-pyrroline

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

selenodiglutathione

glutathioselenol

S-ribosyl-L-homocysteine

autoinducer 2

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

creatinine

N-methylhydantoin

mercuriphenyl acetate

N-ethylammelide

chloroacetaldehyde

glutathione disulfide

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

L-homocysteine

phenylacetate

hydrogen cyanide

Mg-protoporphyrin

protoheme

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

siroheme

Hg⁰

hydrogen sulfide

oxygen

2-iminobutanoate

2-iminosuccinate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

(R)-glycerate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-O-(α-D-mannosyl)-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

3-(all-trans-octaprenyl)benzene-1,2-diol

3-(all-trans-heptaprenyl)benzene-1,2-diol

3-(all-trans-nonaprenyl)benzene-1,2-diol

3-(all-trans-decaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-decaprenylphenol

2-nonaprenylphenol

2-heptaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

2-methoxy-6-(all-trans-heptaprenyl)phenol

2-methoxy-6-(all-trans-nonaprenyl)phenol

6-(all-trans-decaprenyl)-2-methoxy-phenol

(indole-3-yl)acetonitrile

preQ₀

acrylonitrile

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2,5-dichlorophenol

Fe³⁺

H⁺

ammonium

Cu²⁺

Fe²⁺

Mg²⁺

Hg²⁺

molybdate

selenide

superoxide

thiosulfate

sulfite

selenate

hydrogencarbonate

nitrate

sulfate

hydrogensulfite

selenite

OH^-

phosphate

triphosphate

diphosphate

chloride

nitric oxide

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

(2Z)-2-aminobut-2-enoate

agmatine

4-aminobutanal

putrescine

spermidine

S-methyl-L-methionine

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

dodecyl sulfate

(R)-S-lactoylglutathione

3-sulfino-L-alanine

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

(E)-glutaconyl-CoA

dihomo γ-linolenoyl-CoA

isobutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

3-methylglutaconyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

phenylacetyl-CoA

3'-dephospho-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

succinyl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

2-methylbutanoyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(3Z)-dodec-3-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

pentanoyl-CoA

propanoyl-CoA

butanoyl-CoA

lauroyl-CoA

octanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

hexadecanedioyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

1-oleoyl-sn-glycerol

ethene

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

thiamine

riboflavin

nicotinate

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

menadione

FMNH₂

FMN

FAD

FADH₂

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

ubiquinol-7

ubiquinol-9

ubiquinol-8

ubiquinol-10

ubiquinol-6

3-demethylubiquinol-7

3-demethylubiquinol-9

3-demethylubiquinol-8

3-demethylubiquinol-10

ppGpp

cyclic-GMP

dGTP

dIDP

dITP

IDP

ITP

dATP

pppGpp

cyclic-AMP

dADP

dGDP

GDP

hypoxanthine

1-(5-phospho-β-D-ribosyl)-AMP

IMP

XMP

GMP

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

AMP

ADP

ATP

5'-deoxyadenosine

GTP

isoguanine

8-oxo-dGTP

8-oxo-GTP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

cyclic di-3',5'-guanylate

5-hydroxy-CTP

5-hydroxy-CMP

2-hydroxy-dATP

dTTP

dCTP

dUTP

CTP

UTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dUDP

dCDP

CDP

UDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-mannose

ADP-α-D-glucose

preQ₁

uracil

guanine

adenine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

molybdopterin

coenzyme A

oxidized coenzyme F₄₂₀-2

MoO₂-molybdopterin cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

orotate

4-hydroxybenzoate

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicylaldehyde

benzene

vanillyl mandelate

benzaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

phenol

2,3-dihydroxybenzoate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

catechol

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-nonaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-heptaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-nonaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-heptaprenyl-1,4-benzoquinol

salicylate

4-aminobenzoate

benzoate

diacetyl

methylglyoxal

glycolaldehyde

butan-1-al

formaldehyde

1-octanal

acetaldehyde

1-propanal

(S)-lactaldehyde

decanal

dodecanal

phytenal

D-glyceraldehyde

L-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

β-D-ribopyranose

β-D-galactopyranose

butan-1-ol

ethanol

methanol

propan-1-ol

phytol

1-dodecanol

1-octanol

glycerol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

1-(β-D ribofuranosyl)nicotinamide

4-O-phospho-α-Kdo-(2→6)-lipid IV_A

α-Kdo8N-(2→6)-lipid IV_A

4-O-phospho-α-Kdo8N-(2→6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

D-gluconate

L-gulonate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-linoleoyl-sn-glycero-3-phosphocholine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

phytyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

phlorisovalerophenone

deoxycohumulone

4-prenylphlorisovalerophenone

deoxyhumulone

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

acetamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

succinate

fumarate

L-aspartate

(S)-malate

(4S)-4-hydroxy-2-oxoglutarate

D-glucarate

α,ω-9Z-octadecenedioate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

cis-2-methylaconitate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

pyruvate

glyoxylate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

acetate

formate

propanoate

(S)-lactate

(R)-lactate

butanoate

pentanoate

octanoate

7-hydroxylaurate

laurate

decanoate

(R)-3-hydroxybutanoate

(15Z)-tetracosenoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(3E,5Z)-tetradecadienoate

α-linolenate

linoleate

oleate

stearate

palmitate

(2E)-hexadecenoate

di-homo-γ-linolenate

phytenate

(R)-pantoate

carbamate

L-α-amino-ε-keto-pimelate

L-serine

L-asparagine

glycine

L-glutamine

L-threonine

L-tyrosine

L-cysteine

L-histidine

L-arginine

L-lysine

L-glutamate

L-selenocysteine

L-isoleucine

L-leucine

L-proline

L-valine

L-alanine

L-tryptophan

L-phenylalanine

L-methionine

N-carbamoylsarcosine

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-arginine

D-aspartate

D-proline

D-alanine

L,L-diaminopimelate

L-2,4-diaminobutanoate

L-aspartyl-4-phosphate

L-ornithine

N-carbamoyl-L-aspartate

N-acetyl-L-aspartate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

iminoarginine

seleno-L-homocysteine

L-selenomethionine

2-hydroxy-5-oxoproline

3-phospho-L-serine

sarcosine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

N-α-acetyl lysine methyl ester

O-acetyl-L-homoserine

L-citrulline

L-canaline

S-sulfo-L-cysteine

L-homoserine

L-aspartate 4-semialdehyde

hypoglycin A

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine