an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

(S)-dihydroorotate

orotidine 5'-phosphate

S-ribosyl-L-homocysteine

autoinducer 2

selenodiglutathione

glutathioselenol

hydrogen peroxide

γ-L-glutamyl 5-phosphate

DNA without lesion

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

3-oxopropanoate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

S-formylglutathione

5-aminolevulinate

porphobilinogen

anthranilate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

urea

β-nicotinate D-ribonucleotide

quinolinate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

glutathione disulfide

N-(5-phosphoribosyl)-anthranilate

O-ureido-L-homoserine

citrate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-deoxy-D-arabino-heptulosonate 7-phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

1-deoxy-L-glycero-tetrulose 4-phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

glycerone phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

3-phosphooxypyruvate

phosphoenolpyruvate

preuroporphyrinogen

L-tartrate

oxaloacetate

oxalosuccinate

CO₂

L-arginino-succinate

canavaninosuccinate

L-canavanine

5-methylcytosine

carbamoyl phosphate

carboxyphosphate

H₂O

hydrogen selenide

mercuriphenyl acetate

3-dehydroquinate

2-hydroxy-4-carboxymuconate semialdehyde hemiacetal

L-histidinol phosphate

histidinol

histidinal

7-carboxy-7-deazaguanine

prenyl diphosphate

isopentenyl diphosphate

acetoacetate

4-hydroxybenzaldehyde

4-carboxy-2-hydroxymuconate-6-semialdehyde

6-chloro-2-hydroxy-4-carboxymuconate-6-semialdehyde

2-pyrone-4,6-dicarboxylate

(R)-mevalonate

5-enolpyruvoyl-shikimate 3-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

selenophosphate

glycolate

3-amino-1-hydroxyacetone 1-phosphate

carboxynorspermidine

norspermidine

(S)-2-amino-6-oxohexanoate

citraconate

(2R,3S)-3-methylmalate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

O-acetyl-L-serine

meso-tartrate

2-hydroxy-3-oxosuccinate

2-oxoadipate

3-methylmuconolactone

4-methyl-3-oxoadipate-enol-lactone

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate

muconolactone

(+)-muconolactone

cis,cis-muconate

4'-phosphopantetheine

3-hydroxypropanoate

(S)-4-amino-5-oxopentanoate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

DNA with lesion

L-homocysteine

4-methylphenol

uroporphyrinogen-I

uroporphyrinogen-III

oxygen

hydrogen sulfide

Hg⁰

2-iminobutanoate

2-iminosuccinate

2-chloroacetate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

(R)-citramalate

(S)-methylmalonate-semialdehyde

2-octaprenylphenol

preQ₀

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

Fe³⁺

H⁺

ammonium

Cu²⁺

Fe²⁺

Hg²⁺

sulfate

molybdate

selenite

superoxide

tetrathionate

thiosulfate

selenate

OH^-

hydrogencarbonate

selenide

phosphonate

phosphate

diphosphate

triphosphate

chloride

hydroxyl radical

(2Z)-2-aminobut-2-enoate

spermidine

putrescine

cadaverine

S-(hydroxymethyl)glutathione

methanethiol

glutathione

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

malonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

(S)-malyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

propanoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

methane

riboflavin

nicotinate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

pyridoxine 5'-phosphate

menadione

FMNH₂

FMN

FAD

FADH₂

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinone

caldariellaquinol

isoguanine

8-oxo-dGTP

8-oxo-GTP

1-(5-phospho-β-D-ribosyl)-ATP

dADP

IDP

ITP

dIDP

dITP

dGDP

GDP

adenylo-succinate

AMP

dGTP

GTP

dATP

IMP

XMP

ATP

ADP

1-(5-phospho-β-D-ribosyl)-AMP

GMP

5-fluorocytosine

5-fluorouracil

adenosine

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

CTP

UTP

dUMP

dTMP

UMP

CMP

dTDP

dCDP

dUDP

UDP

CDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

preQ₁

thymine

cytosine

uracil

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

dTDP-3-dehydro-6-deoxy-α-D-galactopyranose

coenzyme A

(S)-1-pyrroline-5-carboxylate

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

orotate

benzene

4-hydroxybenzoate

salicylaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-hydroxybenzyl alcohol

catechol

protocatechuate

menadiol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

salicylate

5-chloroprotocatechuate

4-aminobenzoate

benzoate

diacetyl

methylglyoxal

butan-1-al

formaldehyde

acetaldehyde

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

ethanol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

3,5-cyclohexadiene-1,2-diol-1-carboxylate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-fructofuranose 1-phosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

L-aspartate

fumarate

succinate

(S)-malate

(2R,3S)-2-methylisocitrate

(2S,3S)-2-methylcitrate

cis-aconitate

3-carboxy-cis,cis-muconate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

cis-2-methylaconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

acetate

formate

(R)-lactate

carbamate

L-2-aminoadipate

L-serine

L-cysteine

glycine

L-tyrosine

L-threonine

L-glutamine

L-arginine

L-histidine

L-lysine

L-glutamate

L-methionine

L-leucine

L-phenylalanine

L-alanine

L-proline

L-valine

L-isoleucine

L-tryptophan

β-alanine

D-glutamate

L-ornithine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

seleno-L-homocysteine

L-selenomethionine

L-saccharopine

3-phospho-L-serine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-canaline

L-glutamate-5-semialdehyde

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

γ-L-glutamyl-L-cysteine