an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-amino-3-carboxymuconate-6-semialdehyde

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

selenodiglutathione

glutathioselenol

hydrogen selenide

(R)-4'-phosphopantothenate

urea

glutathione disulfide

4-amino-4-deoxychorismate

propanoyl phosphate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N¹-(5-phospho-β-D-ribosyl)glycinamide

D-erythro-imidazole-glycerol-phosphate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

(R)-pantothenate

pimeloyl-CoA

8-amino-7-oxononanoate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

glycolate

(R)-4'-phosphopantothenoyl-L-cysteine

5-oxo-L-proline

adenosine 5'-phosphoselenate

O-phosphoethanolamine

phosphocholine

N-methylethanolamine phosphate

N-dimethylethanolamine phosphate

5-phospho-β-D-ribosylamine

3-phosphooxypyruvate

porphobilinogen

preuroporphyrinogen

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

α-D-ribose 1,5-bisphosphate

orotidine 5'-phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

creatinine

1-deoxy-L-glycero-tetrulose 4-phosphate

selenophosphate

lipid IV_A

histidinal

histidinol

N⁵-carboxyaminoimidazole ribonucleotide

lipid X

lipid A disaccharide (E. coli)

(S)-dihydroorotate

3-deoxy-D-arabino-heptulosonate 7-phosphate

hydroxylamine

bisorganyltrisulfane

prephenate

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-dehydropantoate

thiamine phosphate

thiamine diphosphate

nicotinate adenine dinucleotide

DNA without lesion

3-deoxy-α-D-manno-2-octulosonate

3-deoxy-D-manno-octulosonate 8-phosphate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

CDP-glycerol

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

3-dehydroquinate

3-dehydroshikimate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(R)-2,3-dihydroxy-3-methylpentanoate

xanthine

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

7-carboxy-7-deazaguanine

shikimate

shikimate 3-phosphate

coenzyme B

methanophenazine

CoB-CoM heterodisulfide

dihydromethanophenazine

coproporphyrinogen III

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

3'-phosphoadenylyl-sulfate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

adenosine 5'-phosphosulfate

H₂

N-(5-phosphoribosyl)-anthranilate

2-isopropylmaleate

citrate

quinolinate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

α-D-glucosamine 1-phosphate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

(2S)-2-isopropylmalate

hydrogen peroxide

cyanate

oxalosuccinate

5-enolpyruvoyl-shikimate 3-phosphate

L-canavanine

γ-L-glutamyl 5-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4'-phosphopantetheine

anthranilate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

glycerone phosphate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

5-amino-6-(D-ribitylamino)uracil

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

imidazole acetol-phosphate

L-histidinol phosphate

oxaloacetate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

CO₂

phosphoenolpyruvate

H₂O

carbamoyl phosphate

carboxyphosphate

isopentenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

DNA with lesion

L-homocysteine

phenylacetate

nitrous oxide

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

Mg-protoporphyrin

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

protoheme

protoporphyrin IX

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrinogen IX

siroheme

hydrogen sulfide

oxygen

2-iminobutanoate

2-iminosuccinate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

preQ₀

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

Fe³⁺

K⁺

H⁺

ammonium

Mo²⁺

Zn²⁺

Co²⁺

Mg²⁺

Fe²⁺

sulfate

molybdate

selenite

thiosulfate

OH^-

selenate

selenide

superoxide

nitrite

hydrogensulfite

trithionate

sulfite

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

(2Z)-2-aminobut-2-enoate

putrescine

spermidine

spermine

S-(hydroxymethyl)glutathione

glutathione

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

coenzyme M

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

malonyl-CoA

phenylacetyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3'-dephospho-CoA

acetyl-CoA

isobutanoyl-CoA

phytenoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

nicotinamide

nicotinate

riboflavin

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

menadione

FAD

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

isoguanine

8-oxo-dGTP

8-oxo-GTP

pppGpp

ppGpp

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

GMP

XMP

IMP

adenylo-succinate

dADP

dATP

IDP

ITP

dIDP

dITP

dGDP

dGTP

GDP

GTP

AMP

5'-deoxyadenosine

ATP

ADP

adenosine

inosine

guanosine

xanthosine

cytidine

uridine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dTMP

dCMP

dUMP

CMP

UMP

dTDP

dCDP

dUDP

CDP

UDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-mannose

ADP-α-D-glucose

preQ₁

adenine

guanine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

CDP-α-D-glucose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

CDP-α-D-paratose

CDP-α-tyvelose

CDP-4-dehydro-6-deoxy-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-6B

precorrin-6A

precorrin-5

precorrin-4

precorrin-3B

precorrin-1

precorrin-2

precorrin-3A

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxybenzoate

menadiol

4-aminobenzoate

diacetyl

formaldehyde

acetaldehyde

α-L-arabinopyranose

β-D-galactopyranose

α-D-galactopyranose

methanol

ethanol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

N-acetyl-α-D-glucosamine 1-phosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

chorismate

succinate

fumarate

L-aspartate

(S)-malate

α,ω-9Z-octadecenedioate

cis-aconitate

D-threo-isocitrate

3-phenyl-2-oxopropanoate

pyruvate

2-oxoglutarate

2-oxobutanoate

acetate

formate

(R)-lactate

octanoate

7-hydroxylaurate

laurate

decanoate

(15Z)-tetracosenoate

oleate

α-linolenate

linoleate

stearate

palmitate

phytenate

(R)-pantoate

carbamate

L-serine

L-threonine

glycine

L-tyrosine

L-glutamine

L-histidine

L-lysine

L-arginine

L-glutamate

L-proline

L-tryptophan

L-alanine

L-valine

L-isoleucine

L-leucine

L-phenylalanine

L-methionine

creatine

β-alanine

D-glutamate

D-alanine

L-aspartyl-4-phosphate

L-ornithine

L,L-diaminopimelate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

3-phospho-L-serine

sarcosine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

L-citrulline

L-glutamate-5-semialdehyde

L-canaline

hypoglycin A

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

meso-diaminopimelate

hypoglycin B

L-cysteinylglycine

D-alanyl-D-alanine