an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
phosphoenolpyruvate
H2O
glycerone phosphate
acetyl phosphate
butanoyl phosphate
α-D-glucosamine 1-phosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
oxaloacetate
CO2
3-methyl-2-oxobutanoate
4'-phosphopantetheine
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
prenyl diphosphate
isopentenyl diphosphate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5-amino-6-(D-ribitylamino)uracil
carboxyphosphate
carbamoyl phosphate
α-ribazole 5'-phosphate
β-nicotinate D-ribonucleotide
5,6-dimethylbenzimidazole
β-D-ribosylnicotinate
hydrogenobyrinate
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-α-D-ribose
(R)-4'-phosphopantothenate
(R)-pantothenate
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
phosphocholine
choline
3-phosphonopyruvate
DNA without lesion
N-acetyl-D-muramate 6-phosphate
coproporphyrinogen III
formate
propanoyl phosphate
dihydrolipoate
5-aminopentanoate
N-acetyl-β-glucosaminylamine
N4-(β-N-acetyl-D-glucosaminyl)-L-asparagine
O-acetyl-L-serine
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
mesaconate
citrate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
3-dehydroshikimate
3-dehydroquinate
xanthine
cyclohex-1,5-diene-1-carbonyl-CoA
(R)-3-(phenyl)lactoyl-CoA
glycolate
ethanolamine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
urocanate
4-imidazolone-5-propanoate
3-deoxy-D-arabino-heptulosonate 7-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate 3-phosphate
shikimate
orotidine 5'-phosphate
4-methyl-2-oxopentanoate
(R)-4'-phosphopantothenoyl-L-cysteine
thiamine diphosphate
2-C-methyl-D-erythritol 4-phosphate
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N5-carboxyaminoimidazole ribonucleotide
nicotinate adenine dinucleotide
1-deoxy-L-glycero-tetrulose 4-phosphate
(S)-dihydroorotate
hydrogen peroxide
selenophosphate
α-ribazole
D-galactosamine-6-phosphate
N-acetyl-D-galactosamine 6-phosphate
5-hydroxytryptophol glucuronide
5-hydroxytryptophol
cotinine-glucuronide
cotinine
L-thyroxine acyl β-D-glucuronide
N-acetyl-serotonin glucuronide
L-thyroxine phenolic β-D-glucuronide
nicotine-glucuronide
N5-(L-1-carboxyethyl)-L-ornithine
L-selenocystathionine
2-oxopent-4-enoate
2,6-dioxo-6-phenylhexa-3-enoate
thiamine phosphate
3-dehydro-2-deoxy-D-gluconate
2-deoxygluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
2-dehydro-3-deoxy-D-gluconate
O-ureido-L-homoserine
hydrogenobyrinate a,c-diamide
creatinine
urea
L-canavanine
dethiobiotin
5-(methylsulfanyl)-ribulose 1-phosphate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
isochorismate
7,8-diaminopelargonate
L-β-lysine
(S)-5-amino-3-oxohexanoate
(3S,5S)-3,5-diaminohexanoate
acetoacetate
S-ribosyl-L-homocysteine
preuroporphyrinogen
porphobilinogen
autoinducer 2
glutathione disulfide
L-arginino-succinate
2-dehydropantoate
1,6-anhydro-N-acetyl-β-muramate
quinolinate
N-succinyl-L,L-2,6-diaminopimelate
formamide
(S)-ureidoglycolate
S-methyl-5'-thioadenosine
oxamate
N-carbamoyl-2-oxoglycine
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
4-oxoglutaramate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
aminoacetone
1,2-dihydro-β-NADP
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
ammonia
(2E)-2-hydroxypenta-2,4-dienoate
(3E)-2-oxopent-3-enoate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
carbamate
L-α-amino-ε-keto-pimelate
L-citrulline
L-cysteine
L-methionine
glycine
L-glutamate
L-aspartate
L-proline
L-phenylalanine
L-serine
L-glutamine
L-alanine
L-lysine
L-tyrosine
L-leucine
L-threonine
L-histidine
L-asparagine
L-arginine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
S-adenosyl-L-homocysteine
L-homocysteine
L-glutamate-5-semialdehyde
L-ornithine
L-canaline
L-homoserine
meso-diaminopimelate
L-aspartyl-4-phosphate
L-2-amino-3-oxobutanoate
seleno-L-homocysteine
trans-4-hydroxy-L-proline
formyl-L-isoglutamine
N-formimino-L-glutamate
sarcosine
N-carbamoyl-L-aspartate
S-methyl-L-cysteine
(2S, 3S)-3-methylaspartate
S-trans-1-propenyl-L-cysteine
S-allyl-L-cysteine
L,L-diaminopimelate
L-cystathionine
L-isoglutamine
D-glutamate
D-alanine
D-proline
creatine
β-alanine
(R)-β-lysine
3,5,3'-triiodo-L-thyronine
trans-cinnamate
2,3-dihydroxybenzoate
benzoate
4-aminobenzoate
allantoate
acetate
D-mannonate
orotate
mycophenolate
(R)-pantoate
(S)-1-pyrroline-5-carboxylate
butanoate
oleate
4-hydroxybutanoate
(R)-lactate
pyruvate
2-oxoglutarate
2-oxobutanoate
glyoxylate
3-phenyl-2-oxopropanoate
chorismate
fumarate
succinate
(S)-malate
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
(S)-(+)-allantoin
trans-3-hydroxycotinine-glucuronide
trans-3'-hydroxycotinine
glucosyl-(heptosyl)3-glucosyluronate-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate
oleanolate 3 β-D-glucuronoside
oleanolate
(2E,6E)-farnesyl diphosphate
trans,octacis-decaprenyl phosphate
geranyl diphosphate
(S)-nicotine
di-trans,octa-cis-undecaprenyl phosphate
all-trans-heptaprenyl diphosphate
geranylgeranyl diphosphate
1-(oleoyl)-sn-glycero-3-phosphoethanolamine
1-(β-D ribofuranosyl)nicotinamide
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
ADP-α-D-glucose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-α-D-glucose
UDP-α-D-galactose
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
α-D-glucopyranose 1-phosphate
α-D-galactose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-tagatofuranose 6-phosphate
D-tagatofuranose 1,6-bisphosphate
D-fructose 6-phosphate
keto-L-tagatose 6-phosphate
erythrulose 1-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
aldehydo-D-ribose 5-phosphate
α-D-ribose 5-phosphate
β-D-ribose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
β-D-galactopyranose
α-D-galactopyranose
β-D-ribopyranose
D-glyceraldehyde
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-D-glucosamine
glycerol
maltotetraose
maltopentaose
maltotriose
maltohexaose
maltoheptaose
ethanol
butan-1-ol
methanol
methylglyoxal
acetaldehyde
formaldehyde
butan-1-al
urate
N-acetyl-serotonin
3,5,3'-triiodo-L-thyronine phenolic β-D-glucuronide
triiodothyroacetate ether glucuronide
3,3',5-triiodothyroacetate
tetraiodothyroacetate ether glucuronide
tetraiodothyroacetate
tetraiodothyroacetate ester glucuronide
3,5,3'-triiodo-L-thyronine acyl β-D-glucuronide
triiodothyroacetate ester glucuronide
L-thyroxine
phenol
adenine
guanine
AMP
XMP
IMP
GMP
ATP
GTP
ITP
ADP
GDP
dGDP
dADP
dGTP
dATP
dAMP
dGMP
hypoxanthine
xanthosine
guanosine
inosine
adenosine
2'-deoxyinosine
2'-deoxyguanosine
2'-deoxyadenosine
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
FMNH2
reduced riboflavin
riboflavin
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
thymine
uracil
preQ1
isoguanine
UDP
CDP-choline
CTP
UTP
dUMP
dUTP
dCMP
dCTP
dTMP
dTTP
dCDP
CDP
dUDP
dTDP
UMP
CMP
uridine
cytidine
thymidine
2'-deoxyuridine
2'-deoxycytidine
adenosylcobalamin
cobyrinate
precorrin-8x
precorrin-4
precorrin-3B
precorrin-2
precorrin-1
precorrin-3A
cobalt-precorrin-5A
cobalt-precorrin-4
coenzyme A
(R)-lipoate
5'-deoxyadenosine
ppGpp
pppGpp
cyclic-AMP
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
adenylo-succinate
1-(5-phospho-β-D-ribosyl)-AMP
1-(5-phospho-β-D-ribosyl)-ATP
8-oxo-GTP
8-oxo-dGTP
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
5-hydroxy-CMP
5-hydroxy-CTP
2-hydroxy-dATP
cyclic di-3',5'-guanylate
NADP+
NAD+
NADPH
NADH
5'-deoxy-5'-fluoroadenosine
(S)-NADHX
(R)-NADHX
nicotinate
thiamine
cob(I)alamin
mycophenolic acid phenolic glucuronide
mycophenolic acid O-acyl-glucuronide
isobutanoyl-CoA
malonyl-CoA
acetyl-CoA
3'-dephospho-CoA
2-methylacetoacetyl-CoA
(E)-glutaconyl-CoA
(R)-2-hydroxyglutaryl-CoA
benzoyl-CoA
succinyl-CoA
CoA-disulfide
4-hydroxybutanoyl-CoA
(S)-3-aminobutanoyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
propanoyl-CoA
butanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(E)-cinnamoyl-CoA
crotonyl-CoA
γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine
γ-L-glutamyl-(S)-methyl-L-cysteine
γ-L-glutamyl-[(S)-allyl]-L-cysteine
glutathione
(2R)-phospho-3-sulfolactate
3-sulfopyruvate
L-cysteate
(2R)-3-sulfolactate
4-methyl-5-(2-phosphooxyethyl)thiazole
5-(2-hydroxyethyl)-4-methylthiazole
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
methanethiol
spermidine
putrescine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
2-iminopropanoate
glycerophosphoserine
glycerophosphoglycerol
sn-glycero-3-phosphoethanolamine
superoxide
hydroxyl radical
nitrate
hydrogencarbonate
selenide
OH-
chloride
phosphonate
phosphate
diphosphate
triphosphate
Fe3+
Co2+
Ni2+
Mg2+
Fe2+
ammonium
H+
2-chloroacetate
preQ0
(S)-ureidoglycine
(R)-3-(phenyl)lactate
N-acetyl-D-mannosamine 6-phosphate
α-D-glucosamine 6-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
2-iminobutanoate
2-iminosuccinate
oxygen
hydrogen sulfide
protoporphyrinogen IX
Mg-protoporphyrin
protoporphyrin IX
uroporphyrinogen-III
uroporphyrinogen-I
protoheme
adenosylcobinamide
cob(I)inamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)yrinate a,c-diamide
adenosyl-cobinamide phosphate
adenosylcobalamin 5'-phosphate
cob(II)yrinate a,c-diamide
cob(II)yrinate c-monoamide
phosphonoacetaldehyde
(2-aminoethyl)phosphonate
ethylphosphate
DNA with lesion