an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
1,2-dihydro-β-NADP
enol-phenylpyruvate
aminoacetone
ammonia
lipid IVA
2-keto-L-gulonate
shikimate
glutathione disulfide
nicotinate adenine dinucleotide
7-epicholate
N-acetyl-D-muramate 6-phosphate
N-succinyl-L,L-2,6-diaminopimelate
(R)-4'-phosphopantothenate
thiamine diphosphate
D-gluconate 6-phosphate
acetoacetate
acetyl phosphate
prephenate
(S)-2,3,4,5-tetrahydrodipicolinate
N-succinyl-2-amino-6-ketopimelate
2-C-methyl-D-erythritol 4-phosphate
histidinal
histidinol
imidazole acetol-phosphate
L-histidinol phosphate
D-erythro-imidazole-glycerol-phosphate
glycolate
3-deoxy-D-arabino-heptulosonate 7-phosphate
(R)-pantothenate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
carbon monoxide
xanthine
5-amino-6-(D-ribitylamino)uracil
L-arginino-succinate
canavaninosuccinate
N-acetyl-L-glutamate 5-semialdehyde
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
N-acetylglutamyl-phosphate
γ-L-glutamyl 5-phosphate
coenzyme B
methanophenazine
CoB-CoM heterodisulfide
dihydromethanophenazine
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
propanoyl phosphate
(lipoyl)adenylate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
isopentenyl diphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-dehydropantoate
(R)-4'-phosphopantothenoyl-L-cysteine
4'-phosphopantetheine
pimeloyl-CoA
8-amino-7-oxononanoate
citraconate
(2R,3S)-3-methylmalate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
orotidine 5'-phosphate
α-D-ribose 1,5-bisphosphate
selenophosphate
carboxyphosphate
O-ureido-L-homoserine
3-deoxy-D-manno-octulosonate 8-phosphate
3-deoxy-α-D-manno-2-octulosonate
L-canavanine
urea
4-phosphooxy-L-threonine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
3-dehydroquinate
3-dehydroshikimate
α-D-glucosamine 1-phosphate
2-keto-D-gluconate
2,5-didehydro-D-gluconate
4-aminobutanoate
N-(5-phosphoribosyl)-anthranilate
anthranilate
2-dehydro-3-deoxy-D-gluconate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
L-selenocystathionine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
prenyl diphosphate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
β-D-ribosylnicotinate
DNA without lesion
coproporphyrinogen III
1-deoxy-L-glycero-tetrulose 4-phosphate
lipid X
lipid A disaccharide (E. coli)
(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate
(4Z)-2-oxohept-4-enedioate
3-phosphooxypyruvate
N5-carboxyaminoimidazole ribonucleotide
7-carboxy-7-deazaguanine
(S)-dihydroorotate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
phosphoenolpyruvate
4-amino-4-deoxychorismate
carbamoyl phosphate
β-nicotinate D-ribonucleotide
quinolinate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
5-dehydro-D-gluconate
3-deoxy-D-glycero-2,5-hexodiulosonate
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
oxaloacetate
citrate
oxalosuccinate
H2O
glycerone phosphate
3-methyl-2-oxobutanoate
CO2
hydrogen peroxide
DNA with lesion
L-homocysteine
phosphonoacetaldehyde
(2-aminoethyl)phosphonate
Mg-protoporphyrin
protoheme
uroporphyrinogen-III
protoporphyrin IX
protoporphyrinogen IX
hydrogen sulfide
oxygen
2-iminobutanoate
2-iminopropanoate
2-iminosuccinate
2-chloroacetate
β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)
sn-glycerol 3-phosphate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
ω-saturated C55 dolichol phosphate
(2R)-2,3-dihydroxy-3-methylbutanoate
α-D-glucosamine 6-phosphate
(R)-citramalate
2-octaprenylphenol
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
FMNH2
FMN
(S)-NADHX
(R)-NADHX
caldariellaquinol
caldariellaquinone
NADH
NADPH
NAD+
NADP+
hydroxyl radical
superoxide
Fe3+
ammonium
K+
H+
Fe2+
Mg2+
sulfate
OH-
selenide
hydrogencarbonate
sulfite
phosphate
triphosphate
diphosphate
chloride
glutathione
methanethiol
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
coenzyme M
L-cysteate
3-sulfopyruvate
3-sulfino-L-alanine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
agmatine
dehydrospermidine
spermidine
putrescine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
urate
3-hexaprenyl-4-hydroxybenzoate
4-hydroxybenzoate
6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol
all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
protocatechuate
4-aminobenzoate
preQ0
(R)-lipoate
coenzyme A
7,8-dihydrofolate monoglutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
riboflavin
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3-dehydrocholate
isocholate
glycocholate
chenodeoxycholate
cholate
7-oxolithocholate
4-hydroxybutanoyl-CoA
3'-dephospho-CoA
(R)-2-hydroxyglutaryl-CoA
(E)-glutaconyl-CoA
succinyl-CoA
acetyl-CoA
isobutanoyl-CoA
(S)-methylmalonyl-CoA
(R)-methylmalonyl-CoA
crotonyl-CoA
propanoyl-CoA
acetoacetyl-CoA
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
chorismate
succinate
fumarate
L-aspartate
(S)-malate
3-carboxy-cis,cis-muconate
cis-aconitate
D-threo-isocitrate
3-oxoadipate
pyruvate
acetate
formate
propanoate
(R)-lactate
4-hydroxybutanoate
(R)-pantoate
orotate
D-mannonate
D-gluconate
(S)-1-pyrroline-5-carboxylate
4-deoxy-L-threo-hex-4-enopyranuronate
D-tagaturonate
aldehydo-D-galacturonate
L-α-amino-ε-keto-pimelate
carbamate
L-serine
β-alanine
L-leucine
L-alanine
L-proline
glycine
L-glutamine
D-glutamate
L-glutamate
L-lysine
L-arginine
L-histidine
L-tyrosine
L-phenylalanine
L-tryptophan
D-alanine
L-aspartyl-4-phosphate
seleno-L-homocysteine
L-2-amino-3-oxobutanoate
3-phospho-L-serine
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
N-acetyl-L-citrulline
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-methionine
L-cysteine
L,L-diaminopimelate
L-asparagine
L-threonine
L-isoleucine
L-valine
L-cystathionine
L-ornithine
L-citrulline
L-homoserine
L-glutamate-5-semialdehyde
S-adenosyl-L-homocysteine
L-canaline
L-aspartate 4-semialdehyde
S-adenosyl-L-methionine
meso-diaminopimelate
3-phenyl-2-oxopropanoate
2-oxobutanoate
2-oxoglutarate
glycerol
ethanol
methanol
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
all-trans-nonaprenyl diphosphate
all-trans-hexaprenyl diphosphate
all-trans-decaprenyl diphosphate
all-trans-heptaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
3-nonaprenyl-4-hydroxybenzoate
3-decaprenyl-4-hydroxybenzoate
3-heptaprenyl-4-hydroxybenzoate
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
maltotriose
raffinose
maltotetraose
stachyose
maltoheptaose
maltohexaose
maltopentaose
4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate
4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate
sucrose
β-D-fructofuranose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-glucosamine
D-glyceraldehyde
α-D-glucopyranose
β-D-glucopyranose
β-D-galactopyranose
α-D-galactopyranose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
1-O-acetyl-α-maltose
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
D-ribulose-1,5-bisphosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
sucrose 6G-phosphate
CMP-3-deoxy-β-D-manno-octulosonate
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-α-D-galactofuranose
UDP-α-D-galactose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
dTDP-3-dehydro-6-deoxy-α-D-galactopyranose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
GDP-α-D-mannose
GDP-4-dehydro-α-D-rhamnose
GDP-β-L-fucose
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
5-phospho-α-D-ribose 1-diphosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
D-altronate
L-idonate
diacetyl
formaldehyde
acetaldehyde
dTDP
dTTP
dUMP
dTMP
uracil
dUDP
CDP
dCMP
dCDP
UDP
dUTP
UTP
dCTP
CTP
UMP
CMP
cytidine
uridine
2'-deoxycytidine
2'-deoxyuridine
thymidine
hypoxanthine
adenine
guanine
isoguanine
preQ1
xanthosine
guanosine
adenosine
inosine
2'-deoxyinosine
2'-deoxyadenosine
2'-deoxyguanosine
GTP
ATP
ADP
GDP
GMP
XMP
IMP
AMP
dATP
dGTP
dGDP
dADP
dAMP
dGMP
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropteroate
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
6-carboxy-5,6,7,8-tetrahydropterin
8-oxo-GTP
8-oxo-dGTP
pppGpp
ppGpp
5'-deoxyadenosine
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
adenylo-succinate
cyclic di-3',5'-guanylate
5-hydroxy-CTP
2-hydroxy-dATP
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA