an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

xanthine

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

citrate

selenodiglutathione

orotidine 5'-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

3-deoxy-α-D-manno-2-octulosonate

N-(5-phosphoribosyl)-anthranilate

anthranilate

nicotinate adenine dinucleotide

(R)-pantothenate

(R)-4'-phosphopantothenate

hydrogen selenide

acetoacetate

2-amino-3-carboxymuconate-6-semialdehyde

coproporphyrinogen III

4-carboxy-2-hydroxypenta-2,4-dienoate

CO₂

phosphoenolpyruvate

formate

3-deoxy-D-manno-octulosonate 8-phosphate

glycerone phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

oxaloacetate

H₂O

α-D-glucosamine 1-phosphate

3-methyl-2-oxobutanoate

(S)-dihydroorotate

glutathioselenol

glutathione disulfide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

carboxyphosphate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

3-oxopropanoate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

methylsalicylate

preuroporphyrinogen

2-dehydropantoate

3-dehydroquinate

bisorganyltrisulfane

hydrogen peroxide

ammonia

enol-phenylpyruvate

glycolate

1,2-dihydro-β-NADP

1-piperideine 6-carboxylate

lipid IV_A

4-oxoglutaramate

porphobilinogen

thiamine phosphate

thiamine diphosphate

propanoyl phosphate

salicyl alcohol

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

3-amino-1-hydroxyacetone 1-phosphate

3-hydroxypropanoate

N6'-acetylkanamycin-B

N-ethylmaleimide

N-ethylsuccinimide

5-amino-6-(D-ribitylamino)uracil

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-methyl-2-oxopentanoate

4-amino-4-deoxychorismate

lipid X

lipid A disaccharide (E. coli)

(S)-2-amino-6-oxohexanoate

(lipoyl)adenylate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

D-gluconate 6-phosphate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

pimeloyl-CoA

8-amino-7-oxononanoate

L-selenocystathionine

N-succinyl-L,L-2,6-diaminopimelate

O-acetyl-L-serine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

N-carbamoylputrescine

γ-L-glutamyl 5-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

carbamoyl phosphate

methyl-1,4-benzoquinol

H₂

carbonic acid

coenzyme F₃₉₀-A

isopentenyl diphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

ADP-L-glycero-β-D-manno-heptose

prenyl diphosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

shikimate

ethanolamine

2-methyl-1,4-benzoquinone

DNA without lesion

7-carboxy-7-deazaguanine

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

formamide

L-histidinol phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

histidinol

4-imidazolone-5-propanoate

urocanate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

β-nicotinate D-ribonucleotide

quinolinate

oxalosuccinate

3-dehydroshikimate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

phenol

2,3-dihydroxybenzoate

catechol

menadiol

caldariellaquinol

ubiquinol-8

3-demethylubiquinol-8

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

5,5'-dehydrodivanillate

2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl

OH-DDVA meta-cleavage product

salicylate

5-carboxyvanillate

vanillate

4-aminobenzoate

acetone

menadione

caldariellaquinone

methylglyoxal

formaldehyde

acetaldehyde

D-glyceraldehyde

DNA with lesion

L-homocysteine

protoheme

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrin IX

oxygen

S⁰

hydrogen sulfide

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

preQ₀

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-deoxy-5'-fluoroadenosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

Fe³⁺

H⁺

ammonium

Fe²⁺

selenite

sulfate

OH^-

nitrate

superoxide

hydrogensulfite

sulfite

selenate

hydrogencarbonate

phosphate

diphosphate

triphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

2-aminoprop-2-enoate

agmatine

spermidine

putrescine

cadaverine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

S-(hydroxymethyl)glutathione

glutathione

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

3-sulfino-L-alanine

all-trans-retinyl palmitate

malonyl-CoA

isovaleryl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

acryloyl-CoA

methylacrylyl-CoA

3-hydroxypropanoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

isobutanoyl-CoA

3'-dephospho-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

phytenoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxyoleoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxystearoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

decanoyl-CoA

octanoyl-CoA

lauroyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxooctadecanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

glycocholate

cholate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

thiamine

riboflavin

nicotinate

all-trans-retinol

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

FMNH₂

FADH₂

FMN

FAD

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

2'-deoxyguanosine

hypoxanthine

2'-deoxyadenosine

dADP

dGDP

GDP

GTP

ADP

ATP

AMP

dITP

dGMP

dAMP

isoguanine

8-oxo-dGTP

8-oxo-GTP

5'-deoxyadenosine

XMP

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

dATP

IDP

ITP

dIDP

dGTP

IMP

GMP

ppGpp

pppGpp

2'-deoxyinosine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

adenosine

inosine

xanthosine

guanosine

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

cyclic di-3',5'-guanylate

5-hydroxy-CMP

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

UMP

CMP

dUDP

dCDP

dTDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cytidine-3'-monophosphate

uridine 3'-monophosphate

preQ₁

uracil

thymine

guanine

adenine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

coenzyme A

(R)-lipoate

oxidized coenzyme F₄₂₀-2

L-threo-7,8-dihydrobiopterin

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

sepiapterin

7,8-dihydropteroate

(6R)-4a-hydroxy-tetrahydrobiopterin

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

methanol

glycerol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

kanamycin B

geranyl diphosphate

trans,octacis-decaprenyl phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

chorismate

fumarate

L-aspartate

succinate

(S)-malate

α,ω-9Z-octadecenedioate

(2R,3S)-2-methylisocitrate

(2S,3S)-2-methylcitrate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

3-phenyl-2-oxopropanoate

pyruvate

2-oxoglutarate

2-oxobutanoate

propanoate

decanoate

octanoate

laurate

7-hydroxylaurate

(R)-3-hydroxybutanoate

(R)-lactate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

(15Z)-tetracosenoate

oleate

palmitate

stearate

α-linolenate

linoleate

phytenate

acetate

(R)-pantoate

carbamate

L-α-amino-ε-keto-pimelate

L-serine

L-tyrosine

L-glutamine

L-asparagine

L-cysteine

glycine

L-lysine

L-arginine

L-histidine

L-glutamate

L-leucine

L-tryptophan

L-alanine

L-phenylalanine

L-methionine

L-valine

L-proline

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-ornithine

D-alanine

L-isoglutamine

L-cystathionine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-ornithine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

seleno-L-homocysteine

L-saccharopine

S-methyl-L-cysteine

N-acetyl-L-glutamate

L-citrulline

S-adenosyl-L-methionine

L-homoserine

hypoglycin A

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

di-trans,octa-cis-undecaprenyl phosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate