an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
canavaninosuccinate
O-ureido-L-homoserine
L-arginino-succinate
H2O
oxaloacetate
hydrogen peroxide
CO2
acetyl phosphate
phosphoenolpyruvate
imidazole acetol-phosphate
D-erythro-imidazole-glycerol-phosphate
L-histidinol phosphate
orotidine 5'-phosphate
(S)-dihydroorotate
carboxyphosphate
carbamoyl phosphate
3-dehydroshikimate
shikimate
3-dehydroquinate
L-quinate
3-deoxy-D-glycero-2,5-hexodiulosonate
5-dehydro-D-gluconate
S-formylglutathione
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
2-succinylbenzoate
1,4-dihydroxy-2-naphthoyl-CoA
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
glycerone phosphate
5-enolpyruvoyl-shikimate 3-phosphate
α-D-glucosamine 1-phosphate
N-acetyl-L-glutamate 5-semialdehyde
5-phospho-β-D-ribosylamine
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
isopentenyl diphosphate
coproporphyrinogen III
S-ribosyl-L-homocysteine
prephenate
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
oxalosuccinate
citrate
butanoyl phosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
γ-L-glutamyl 5-phosphate
4'-phosphopantetheine
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
(2S)-2-isopropylmalate
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
(S)-3-methyl-2-oxopentanoate
(R)-2,3-dihydroxy-3-methylpentanoate
3-methyl-2-oxobutanoate
nicotinate adenine dinucleotide
β-nicotinate D-ribonucleotide
2-C-methyl-D-erythritol 4-phosphate
N-acetyl-D-muramate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
β-D-ribosylnicotinate
(indol-3-yl)pyruvate
4-aminobutanoate
N5-(L-1-carboxyethyl)-L-ornithine
CDP-glycerol
glycolate
salicyl alcohol
5-dehydro-2-deoxy-D-gluconate 6-phosphate
5-dehydro-2-deoxy-D-gluconate
3-oxopropanoate
N-carbamoyl-2-oxoglycine
(S)-ureidoglycolate
DNA without lesion
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
histidinol
histidinal
D-gluconate 6-phosphate
6-phospho D-glucono-1,5-lactone
propanoyl phosphate
thiamine diphosphate
(R)-4'-phosphopantothenoyl-L-cysteine
1,4-dihydroxy-2-naphthoate
O-acetyl-L-serine
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
dihydroxyacetone
2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate
isochorismate
3-phosphooxypyruvate
4-methyl-2-oxopentanoate
xanthine
3-deoxy-D-arabino-heptulosonate 7-phosphate
shikimate 3-phosphate
ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
L-selenocystathionine
2,5-didehydro-D-gluconate
2-keto-D-gluconate
carbonic acid
anthranilate
N-(5-phosphoribosyl)-anthranilate
N-acetylglutamyl-phosphate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N5-carboxyaminoimidazole ribonucleotide
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
prenyl diphosphate
2-maleylacetate
preuroporphyrinogen
porphobilinogen
urea
D-galactosamine-6-phosphate
N-acetyl-D-galactosamine 6-phosphate
chloroacetaldehyde
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(2R,3S)-3-methylmalate
citraconate
2-oxovalerate
3-ethylmalate
(2S)-2-isopropyl-3-oxosuccinate
acetoacetate
4-fumaryl-acetoacetate
(lipoyl)adenylate
(R)-4'-phosphopantothenate
(R)-pantothenate
cis-3-phenylcyclohexa-3,5-diene-1,2-diol
methylsalicylate
thiamine phosphate
2-dehydropantoate
quinolinate
2-oxopent-4-enoate
2,6-dioxo-6-phenylhexa-3-enoate
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
glutathione disulfide
2-keto-L-gulonate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
2-dehydro-3-deoxy-D-gluconate
autoinducer 2
ammonia
aminoacetone
(2E)-2-hydroxypenta-2,4-dienoate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
1,2-dihydro-β-NADP
(3E)-2-oxopent-3-enoate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
superoxide
hydroxyl radical
FMN
FMNH2
FADH2
FAD
NAD+
NADP+
NADH
NADPH
3-demethylubiquinol-8
demethylmenaquinol-8
ubiquinol-8
(R)-NADHX
(S)-NADHX
2-chloroacetate
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-4-hydroxy-2-oxopentanoate
5-chloro-5-deoxy-D-ribonate
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-deoxy-5'-fluoroadenosine
ethene
2-methoxy-6-(all-trans-octaprenyl)phenol
2-octaprenylphenol
(S)-3-hydroxy-isobutanoate
3-(all-trans-octaprenyl)benzene-1,2-diol
(S)-methylmalonate-semialdehyde
(R)-methylmalonate-semialdehyde
(R)-citramalate
N-acetyl-D-mannosamine 6-phosphate
α-D-glucosamine 6-phosphate
(2R)-2,3-dihydroxy-3-methylbutanoate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
2-iminobutanoate
2-iminopropanoate
2-iminosuccinate
oxygen
hydrogen sulfide
protoporphyrin IX
protoporphyrinogen IX
coproporphyrinogen I
uroporphyrinogen-I
uroporphyrinogen-III
protoheme
ethylphosphate
L-homocysteine
DNA with lesion
ADP
ATP
AMP
GDP
GTP
XMP
IMP
dATP
dADP
dGTP
dGDP
dITP
dIDP
ITP
IDP
adenylo-succinate
5'-deoxyadenosine
GMP
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
hypoxanthine
2'-deoxyguanosine
2'-deoxyadenosine
2'-deoxyinosine
pppGpp
ppGpp
8-oxo-dGTP
isoguanine
8-oxo-GTP
dUMP
dTMP
dCMP
dTDP
dUDP
dCDP
dTTP
dUTP
dCTP
UMP
CMP
CDP
UDP
CTP
UTP
β-nicotinamide D-ribonucleotide
2-hydroxy-dATP
5-hydroxy-CTP
cyclic di-3',5'-guanylate
inosine
adenosine
guanosine
xanthosine
thymidine
2'-deoxyuridine
2'-deoxycytidine
cytidine
uridine
ADP-α-D-glucose
GDP-α-D-mannuronate
GDP-α-D-mannose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-α-D-galactose
UDP-α-D-glucose
UDP-N-acetyl-α-D-mannosamine
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
adenine
guanine
uracil
thymine
preQ1
6,7-dehydrobaicalein
baicalein
tetrahydromethanopterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydromonapterin
7,8-dihydroneopterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
guanylyl molybdenum cofactor
MoO2-molybdopterin cofactor
7,8-dihydropteroate
5,10-methylene-tetrahydromethanopterin
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
riboflavin
reduced riboflavin
orotate
(S)-1-pyrroline-5-carboxylate
(R)-acetoin
2,5-piperidinedione
methylglyoxal
diacetyl
glycolaldehyde
(S)-lactaldehyde
acetaldehyde
formaldehyde
1-octanal
α-D-galactopyranose
β-D-galactopyranose
β-L-rhamnopyranose
α-L-rhamnopyranose
D-gluconate
L-idonate
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
N-monoacetylchitobiose 6'-phosphate
N,N'-diacetylchitobiose 6'-phosphate
β-D-cellobiose 6'-phosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
arbutin-6-phosphate
salicin 6-phosphate
methyl β-D-glucoside 6-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-ribitol 5-phosphate
L-rhamnulose 1-phosphate
α-D-glucopyranose 1-phosphate
α-D-galactose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-tagatofuranose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
glycerol
D-mannitol 1-phosphate
L-iditol
D-sorbitol
keto-D-fructose
keto-L-sorbose
β-D-fructofuranose
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-D-glucosamine
D-xylulose
4-deoxy-L-threo-hex-4-enopyranuronate
4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine
β-D-cellobiose
maltotriose
maltohexaose
maltoheptaose
maltotetraose
maltopentaose
unsaturated gellan tetrasaccharide
β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp
betanidin quinone
betanidin
(2E,6E)-farnesyl diphosphate
trans,octacis-decaprenyl phosphate
all-trans-retinol
all-trans-retinyl palmitate
(3E)-undec-3-enoyl-CoA
2-trans, 4-cis-undecadienoyl-CoA
2-trans, 4-trans-undecadienoyl-CoA
(3E)-tetradec-3-enoyl-CoA
(2E,4E)-tetradeca-2,4-dienoyl-CoA
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-oleoyl-sn-glycerol 3-phosphate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
3-octaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-octaprenyl diphosphate
all-trans-heptaprenyl diphosphate
geranylgeranyl diphosphate
16-hydroxypalmitate
18-hydroxystearate
18-hydroxyoleate
1-octanol
ethanol
methanol
myo-inositol
scyllo-inositol
1D-chiro-inositol
scyllo-inosose
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
1-keto-D-chiro-inositol
1D-myo-inositol 3-monophosphate
1D-myo-inositol 1-monophosphate
hydroquinone
biphenyl-2,3-diol
protocatechuate
carbamate
L-selenomethionine
seleno-L-homocysteine
L-aspartyl-4-phosphate
L-2-amino-3-oxobutanoate
O-acetyl-L-homoserine
trans-4-hydroxy-L-proline
N-acetyl-L-glutamate
N-acetyl-L-ornithine
N-carbamoyl-L-aspartate
S-methyl-L-methionine
3-phospho-L-serine
D-alanine
D-glutamate
L-phenylalanine
L-tryptophan
L-tyrosine
L-histidine
L-arginine
L-glutamate
glycine
L-serine
L-glutamine
L-alanine
L-proline
L-leucine
β-alanine
(S)-3-amino-2-methylpropanoate
L-citrulline
L-methionine
L-aspartate
L-isoleucine
L-threonine
L-asparagine
L-valine
L-cysteine
O-succinyl-L-homoserine
S-adenosyl-L-methionine
L-ornithine
L-aspartate 4-semialdehyde
S-adenosyl-L-homocysteine
L-glutamate-5-semialdehyde
O-phospho-L-homoserine
L-homoserine
L-canaline
meso-diaminopimelate
L-cystathionine
L,L-diaminopimelate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
7-hydroxylaurate
decanoate
laurate
octanoate
pyruvate
acetate
formate
(S)-lactate
(R)-lactate
butanoate
3-oxoadipate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
chorismate
(3E)-2-oxohex-3-enedioate
α,ω-9Z-octadecenedioate
succinate
fumarate
(S)-malate
2-oxoglutarate
2-oxobutanoate
4-(methylsulfanyl)-2-oxobutanoate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
salicylate
benzoate
4-aminobenzoate
allantoate
(R)-pantoate
5-deoxy-D-glucuronate
(15Z)-tetracosenoate
pristanate
palmitate
stearate
oleate
phytenate
linoleate
α-linolenate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
(S)-(+)-allantoin
acetyl-CoA
malonyl-CoA
3'-dephospho-CoA
linoleoyl-CoA
α-linolenoyl-CoA
5-aminolevulinyl-CoA
(E)-glutaconyl-CoA
(R)-2-hydroxyglutaryl-CoA
succinyl-CoA
isobutanoyl-CoA
methylacrylyl-CoA
(S)-3-hydroxy-isobutanoyl-CoA
oleoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
16-hydroxypalmitoyl-CoA
hexadecanedioyl-CoA
palmitoyl-CoA
stearoyl-CoA
18-hydroxystearoyl-CoA
18-hydroxyoleoyl-CoA
7-hydroxylauroyl-CoA
decanoyl-CoA
lauroyl-CoA
octanoyl-CoA
pristanoyl-CoA
propanoyl-CoA
(Z)-15-tetracosenoyl-CoA
phytenoyl-CoA
trans-Δ2, cis-Δ4-decadienoyl-CoA
(2E)-dec-2-enoyl-CoA
trans-dienelactone
cis-dienelactone
(indol-3-yl)acetate
methyl (indol-3-yl)acetate
nicotinate
thiamine
pyridoxamine 5'-phosphate
pyridoxamine
pyridoxine 5'-phosphate
pyridoxine
pyridoxal 5'-phosphate
pyridoxal
coenzyme A
(R)-lipoate
preQ0
biphenyl
6-hydroxy-2-cyclohexen-one-carboxylate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
4-hydroxybenzoate
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
γ-L-glutamyl-L-cysteine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
S-(hydroxymethyl)glutathione
glutathione
(R)-S-lactoylglutathione
3-sulfopyruvate
L-cysteate
4-methyl-5-(2-phosphooxyethyl)thiazole
5-(2-hydroxyethyl)-4-methylthiazole
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
methanethiol
Fe3+
Fe2+
ammonium
H+
K+
hydrogencarbonate
OH-
chloride
phosphate
diphosphate