ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11543

H2O

C13985

(R)-5-phosphomevalonate

C11964

(R)-mevalonate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C1196

S-methyl-5'-thioadenosine

C15238

5-deoxy-α-ribose 1-phosphate

C11857

β-nicotinate D-ribonucleotide

C2191

carbamoyl phosphate

C928

CO2

C3262

3-methyl-2-oxobutanoate

C11639

succinate semialdehyde

C1321

4-aminobutanoate

C6349

3-oxopropanoate

C11479

phosphoenolpyruvate

C1184

5-phospho-β-D-ribosylamine

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C11832

orotidine 5'-phosphate

C10349

glycerone phosphate

C12352

(S)-dihydroorotate

C11715

quinolinate

C12218

α-D-glucosamine 1-phosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C1024

aminoacetone

C14074

prenyl diphosphate

C12364

isopentenyl diphosphate

C11930

N-acetylglutamyl-phosphate

C873

coproporphyrinogen III

C6444

oxaloacetate

C12164

H2

C11648

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

C2263

4-prenylphlorisobutyrophenone

C12374

3-dehydro-2-deoxy-D-gluconate

C12375

2-deoxygluconate

C1528

2-dehydropantoate

C1353

3-phosphooxypyruvate

C188

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C194

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

C11802

4'-phosphopantetheine

C13417

2-isopropylmaleate

C1530

(2R,3S)-3-isopropylmalate

C1438

(2S)-2-isopropylmalate

C13649

N-ethylammeline

C13650

deethylsimazine

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1431

3-dehydroshikimate

C12369

3-dehydroquinate

C8333

(indol-3-yl)pyruvate

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C3888

7-carboxy-7-deazaguanine

C12162

hydrogen peroxide

C11483

glycolate

C11539

xanthine

C9422

nicotinate adenine dinucleotide

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C12016

(lipoyl)adenylate

C1102

O-acetyl-L-serine

C13854

hydrogen selenide

C13928

urea-1-carboxylate

C7865

urea

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C13635

β-D-ribosylnicotinate

C1285

4-imidazolone-5-propanoate

C855

coenzyme F390-A

C1633

(R)-1-aminopropan-2-ol

C1036

α-ribazole 5'-phosphate

C1038

α-ribazole

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C927

carbon monoxide

C3850

5-amino-6-(D-ribitylamino)uracil

C11604

thiamine diphosphate

C11606

thiamine phosphate

C1078

(S)-2-amino-6-oxohexanoate

C6614

O-ureido-L-homoserine

C11493

2-phosphoglycolate

C933

L-canavanine

C1407

3-hydroxypropanoate

C12254

ethanolamine

C12056

L-arginino-succinate

C14924

carboxyphosphate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C13879

(R)-mevalonate diphosphate

C12315

5,6-dimethylbenzimidazole

C12848

N5-carboxyaminoimidazole ribonucleotide

C11711

(R)-1-amino-2-propanol O-2-phosphate

C295

(R)-4-phosphopantoate

C11760

prephenate

C3319

4-methyl-2-oxopentanoate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C13702

1-piperideine 6-carboxylate

C9431

1,2-dihydro-β-NADP

C12274

enol-phenylpyruvate

C1010

ammonia

C5032

carbamate

C12303

L-citrulline

C5588

L-leucine

C5577

L-threonine

C5607

L-glutamate

C5575

L-tryptophan

C5609

L-glutamine

C5573

L-tyrosine

C5596

L-aspartate

C5643

L-asparagine

C12067

glycine

C5579

L-serine

C2469

L-phenylalanine

C5642

L-arginine

C5597

L-alanine

C5612

L-cysteine

C5583

L-methionine

C12229

O-phospho-L-homoserine

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C12239

L-aspartate 4-semialdehyde

C12245

L-homoserine

C12231

L-ornithine

C12247

L-homocysteine

C12263

1-aminocyclopropane-1-carboxylate

C2426

S-sulfo-L-cysteine

C12237

L-canaline

C5592

L-selenocysteine

C12201

L-2-amino-3-oxobutanoate

C12021

D-nopaline

C12065

L-saccharopine

C15000

N-acetyl-L-ornithine

C14988

N-acetyl-L-citrulline

C5466

N-formimino-L-glutamate

C14973

N-acetyl-L-glutamate

C13322

N-carbamoyl-L-aspartate

C3402

3-phospho-L-serine

C8805

D-aspartate

C11441

β-alanine

C11517

acetate

C11482

(R)-pantoate

C11481

orotate

C11485

D-gluconate

C2774

pristanate

C3383

palmitate

C3387

stearate

C3412

decanoate

C3415

laurate

C3207

7-hydroxylaurate

C3409

octanoate

C538

18-hydroxyoleate

C553

16-hydroxypalmitate

C550

18-hydroxystearate

C13266

(15Z)-tetracosenoate

C13210

oleate

C13260

phytenate

C6379

linoleate

C10590

α-linolenate

C6165

leukotriene-E4

C6163

leukotriene-D4

C11476

(R)-glycerate

C3308

pyruvate

C3421

formate

C3301

2-oxoglutarate

C3086

4-(methylsulfanyl)-2-oxobutanoate

C3257

2-oxobutanoate

C3345

3-phenyl-2-oxopropanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C8950

chorismate

C8923

α,ω-9Z-octadecenedioate

C6443

fumarate

C6447

maleate

C2802

(S)-malate

C10996

nicotinamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8033

5-amino-4-imidazolecarboxyamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C2258

phlorisovalerophenone

C4815

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

C4817

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

C8597

daunorubicin

C9077

(2E,6E)-farnesyl diphosphate

C8321

geranyl diphosphate

C2269

deoxyhumulone

C2261

4-prenylphlorisovalerophenone

C2266

deoxycohumulone

C5378

geranylgeranyl diphosphate

C10453

unsaturated CDP-archaeol

C10448

saturated CDP-archaeol

C6269

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

C6266

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

C3860

unsaturated archaetidylethanolamine

C3856

unsaturated archaetidylserine

C3854

saturated archaetidylethanolamine

C3864

saturated archaetidylserine

C5639

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

C4086

1-(β-D ribofuranosyl)nicotinamide

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C9884

ADP-D-ribose

C9888

ADP ribose 1''-phosphate

C9882

ADP ribose 1'',2''-cyclic phosphate

C1009

GDP-α-D-mannose

C8426

CDP-4-dehydro-3,6-dideoxy-α-D-glucose

C8431

CDP-α-abequose

C1896

dTDP-4-dehydro-β-L-rhamnose

C1930

dTDP-β-L-rhamnose

C1939

dTDP-α-D-glucose

C7780

UDP-α-D-glucose

C7722

UDP-α-D-glucuronate

C7444

UDP-N-acetyl-α-D-glucosamine

C10338

5-phospho-α-D-ribose 1-diphosphate

C8819

L-fuculose 1-phosphate

C8813

α-D-mannose 1-phosphate

C8811

α-D-glucopyranose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C973

D-ribulose-1,5-bisphosphate

C8835

β-D-fructofuranose

C9494

D-glyceraldehyde

C2012

keto-D-fructose

C3731

glycerol

C10690

maltopentaose

C10691

maltohexaose

C10688

maltotriose

C10692

maltoheptaose

C10689

maltotetraose

C13573

1D-myo-inositol 3-monophosphate

C6246

(S)-lactaldehyde

C3500

acetaldehyde

C8776

tyramine

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C9454

adenine

C9455

guanine

C7809

AMP

C7827

GMP

C7811

XMP

C7741

IMP

C7844

ATP

C7745

GTP

C7759

ITP

C7757

ADP

C7795

GDP

C7817

IDP

C7807

dGDP

C7823

dADP

C7747

dIDP

C7783

dATP

C7751

dGTP

C7749

dITP

C7785

hypoxanthine

C15088

adenosine

C15091

inosine

C15085

guanosine

C15094

xanthosine

C14603

tetrahydromethanopterin

C5578

6-carboxy-5,6,7,8-tetrahydropterin

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C12676

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

C12726

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12668

molybdopterin adenine dinucleotide

C12718

molybdopterin

C12702

cyclic pyranopterin phosphate

C14624

5,10-methylene-tetrahydromethanopterin

C6007

MoO2-molybdopterin cofactor

C15044

reduced riboflavin

C10049

FMNH2

C10053

FAD

C10052

FMN

C10988

riboflavin

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C8739

uracil

C10601

thymine

C8733

dCDP

C8755

dCMP

C8714

UDP

C8732

CDP

C8760

UTP

C8724

dUTP

C8761

CTP

C8772

dCTP

C8770

dUMP

C8744

dTMP

C8764

dTTP

C8752

dUDP

C8720

dTDP

C2241

UMP

C2245

CMP

C2706

uridine

C2702

cytidine

C2527

2'-deoxyuridine

C2519

thymidine

C2523

2'-deoxycytidine

C5221

adenosylcobalamin

C9874

cob(I)alamin

C10614

coenzyme A

C10611

(R)-lipoate

C2239

oxidized coenzyme F420-2

C5552

5'-deoxyadenosine

C10288

adenylo-succinate

C7652

cyclic-AMP

C4243

β-nicotinamide D-ribonucleotide

C1817

cyclic di-3',5'-guanylate

C4018

NADP+

C4020

NAD+

C14500

NADH

C14497

NADPH

C5392

(S)-NADHX

C5394

(R)-NADHX

C10982

nicotinate

C4210

pyridoxal 5'-phosphate

C4572

(25S)-3-oxocholest-4-en-26-oyl-CoA

C4520

(25S)-3-oxocholest-4-en-26-oate

C4913

malonyl-CoA

C5298

acetyl-CoA

C4922

isobutanoyl-CoA

C5314

2-methylacetoacetyl-CoA

C5061

(2R)-ethylmalonyl-CoA

C4953

(2S)-ethylmalonyl-CoA

C4901

succinyl-CoA

C4927

(E)-glutaconyl-CoA

C5056

linoleoyl-CoA

C4915

α-linolenoyl-CoA

C4937

3'-dephospho-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5309

3-hydroxypropanoyl-CoA

C4981

CoA-disulfide

C3150

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

C5635

oleoyl-CoA

C2009

3-oxopentanoyl-CoA

C2008

acetoacetyl-CoA

C6566

16-hydroxypalmitoyl-CoA

C5892

palmitoyl-CoA

C5885

stearoyl-CoA

C491

18-hydroxyoleoyl-CoA

C480

18-hydroxystearoyl-CoA

C2873

pristanoyl-CoA

C14697

decanoyl-CoA

C14674

lauroyl-CoA

C11187

7-hydroxylauroyl-CoA

C14677

octanoyl-CoA

C1177

propanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C11400

phytenoyl-CoA

C1337

crotonyl-CoA

C5919

(S)-methylmalonyl-CoA

C5920

(R)-methylmalonyl-CoA

C2598

D-glucono-1,5-lactone

C12637

3-sulfopyruvate

C12587

L-cysteate

C10301

agmatine

C3574

spermidine

C3580

dehydrospermidine

C3548

putrescine

C6526

(2Z)-2-aminobut-2-enoate

C11222

sn-glycero-3-phosphoethanolamine

C11219

glycerophosphoserine

C11220

glycerophosphoglycerol

C7036

hydrogencarbonate

C7024

thiosulfate

C7057

molybdate

C7006

chloride

C6097

phosphate

C6093

diphosphate

C6094

triphosphate

C11006

Co2+

C11009

Mg2+

C11001

Mo2+

C4320

H+

C4328

ammonium

C11281

2-chloroacetate

C13354

preQ0

C2017

α-D-glucosamine 6-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6430

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

C6426

2-O-(α-D-mannosyl)-D-glycerate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C8420

sn-glycerol 1-phosphate

C8419

sn-glycerol 3-phosphate

C6599

2-iminobutanoate

C6596

2-iminosuccinate

C7121

oxygen

C7118

hydrogen sulfide

C7126

S0

C7666

protoporphyrinogen IX

C9865

Mg-protoporphyrin

C7676

protoporphyrin IX

C9800

adenosylcobyrate

C9807

adenosylcobinamide

C1218

adenosylcobalamin 5'-phosphate

C9830

adenosylcobinamide-GDP

C9855

adenosyl-cobinamide phosphate

C9869

cob(I)inamide