an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
dihydrophloroglucinol
phloroglucinol
pyrogallol
1,2,3,5-tetrahydroxybenzene
gallate
quinolinate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
carbamoyl phosphate
carboxyphosphate
O-acetyl-L-serine
autoinducer 2
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
2-keto-D-gluconate
2,5-didehydro-D-gluconate
γ-L-glutamyl 5-phosphate
coproporphyrinogen III
(R)-mevalonate diphosphate
(R)-mevalonate
(R)-5-phosphomevalonate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
β-D-ribosylnicotinate
thiamine diphosphate
L-selenocystathionine
prenyl diphosphate
(S)-2,3-dihydrodipicolinate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
3-hydroxy-5-oxohexanoate
3-hydroxy-5- oxohexanoyl-CoA
isochorismate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
2-dehydropantoate
shikimate 3-phosphate
hydrogen peroxide
oxaloacetate
(R)-pantothenate
3-deoxy-D-arabino-heptulosonate 7-phosphate
dihydroxyacetone
DNA without lesion
orotidine 5'-phosphate
acetyl phosphate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
(lipoyl)adenylate
(R)-4'-phosphopantothenate
(S)-3-methyl-2-oxopentanoate
4-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
4-hydroxy-2-nonenal
salicyl alcohol
methylsalicylate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,4-dihydroxy-2-naphthoate
carbonic acid
glycolate
S-ribosyl-L-homocysteine
acetoacetate
α-D-glucosamine 1-phosphate
isopentenyl diphosphate
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
poly(ribitol phosphate)
O-D-alanyl-poly(ribitol phosphate)
phosphoenolpyruvate
2,3-didehydroadipyl-CoA
3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA
(E)-4-coumaroyl-CoA
L-quinate
shikimate
3-dehydroquinate
3-dehydroshikimate
5-enolpyruvoyl-shikimate 3-phosphate
glutathione disulfide
(S)-dihydroorotate
propionamide
(indol-3-yl)acetamide
acrylamide
acrylate
4-guanidinobutyramide
4-guanidinobutanoate
xanthine
(R)-4'-phosphopantothenoyl-L-cysteine
4'-phosphopantetheine
CO2
H2O
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
glycerone phosphate
(glutathion-S-yl)-4-hydroxy-2-nonenal
DNA with lesion
L-homocysteine
ethylphosphate
protoheme
protoporphyrin IX
uroporphyrinogen-III
protoporphyrinogen IX
hydrogen sulfide
oxygen
2-iminosuccinate
2-iminopropanoate
2-iminobutanoate
2-chloroacetate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
preQ0
1-chloro-2,4-dinitrobenzene
2,4-dinitrophenyl-S-glutathione
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
Fe3+
ammonium
H+
Fe2+
OH-
superoxide
hydrogencarbonate
phosphate
diphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
γ-L-glutamyl-[(S)-allyl]-L-cysteine
S-allyl-L-cysteine
γ-L-glutamyl-(S)-methyl-L-cysteine
γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine
S-trans-1-propenyl-L-cysteine
glutathione
L-cysteate
3-sulfopyruvate
(R)-S-lactoylglutathione
all-trans-retinyl palmitate
2-methylbutanoyl-CoA
3'-dephospho-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
2-methylacetoacetyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA
(3S)-hydroxyadipyl-CoA
(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA
3-hydroxyisovaleryl-CoA
(E)-2-methylcrotonoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA
methylacrylyl-CoA
acetyl-CoA
malonyl-CoA
crotonyl-CoA
(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA
(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA
(2E)-dec-2-enoyl-CoA
(2E)-oct-2-enoyl-CoA
oleoyl-CoA
18-hydroxyoleoyl-CoA
(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA
(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(3R)-3-hydroxypentanoyl-CoA
(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA
(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA
(S)-3-hydroxydecanoyl-CoA
(S)-3-hydroxyoctanoyl-CoA
(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA
(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA
butanoyl-CoA
pentanoyl-CoA
propanoyl-CoA
(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA
hexadecanedioyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
(S)-3-hydroxy-isobutanoyl-CoA
methyl (indol-3-yl)acetate
(indol-3-yl)acetate
thiamine
riboflavin
nicotinate
all-trans-retinol
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
7,8-dihydrofolate monoglutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxal
pyridoxine
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
pyridoxamine
pyridoxamine 5'-phosphate
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADH
NADPH
NAD+
NADP+
demethylmenaquinol-8
isoguanine
8-oxo-dGTP
8-oxo-GTP
pppGpp
ppGpp
dAMP
dGMP
dIDP
dITP
IDP
ITP
cyclic-AMP
dATP
dGTP
5'-deoxyadenosine
adenylo-succinate
GTP
dADP
dGDP
GDP
2'-deoxyinosine
2'-deoxyguanosine
hypoxanthine
2'-deoxyadenosine
AMP
IMP
GMP
XMP
ATP
ADP
P1,P4-bis(5'-adenosyl) tetraphosphate
guanosine
adenosine
inosine
xanthosine
cytidine
uridine
2'-deoxycytidine
2'-deoxyuridine
thymidine
2-hydroxy-dATP
5-hydroxy-CTP
dTTP
dCTP
dUTP
UTP
CTP
dCMP
dUMP
dTMP
CMP
UMP
dTDP
dUDP
dCDP
CDP
UDP
β-nicotinamide D-ribonucleotide
ADP-α-D-glucose
preQ1
uracil
thymine
guanine
adenine
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
(R)-lipoate
coenzyme A
(S)-1-pyrroline-5-carboxylate
reduced riboflavin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydropteroate
dipicolinate
orotate
urate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
2,3-dihydroxybenzoate
salicylate
4-aminobenzoate
methylglyoxal
glycolaldehyde
acetaldehyde
D-glyceraldehyde
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
β-D-ribopyranose
ethanol
methanol
glycerol
myo-inositol
1D-myo-inositol 3-monophosphate
1D-myo-inositol 1-monophosphate
1-(β-D ribofuranosyl)nicotinamide
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-glucosamine
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
a peptidoglycan dimer (E. faecium, tetrapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-oleoyl-sn-glycerol 3-phosphate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
geranyl diphosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
geranylgeranyl diphosphate
all-trans-heptaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
acetamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
(3E)-2-oxohex-3-enedioate
chorismate
L-aspartate
fumarate
succinate
3-phenyl-2-oxopropanoate
pyruvate
2-oxobutanoate
2-oxoglutarate
acetate
formate
propanoate
(S)-lactate
(R)-lactate
butanoate
pentanoate
(R)-3-hydroxybutanoate
sophorosyloxydocosanoate
13-sophorosyloxydocosanoate 6',6''-diacetate
13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate
palmitate
(R)-pantoate
carbamate
L-serine
L-cysteine
L-threonine
L-glutamine
L-tyrosine
L-asparagine
glycine
L-lysine
L-glutamate
L-methionine
L-leucine
L-proline
L-isoleucine
L-phenylalanine
L-alanine
L-valine
β-alanine
D-glutamate
D-aspartate
D-alanine
L-cystathionine
L,L-diaminopimelate
N-carbamoyl-L-aspartate
seleno-L-homocysteine
S-methyl-L-cysteine
trans-4-hydroxy-L-proline
L-glutamate-5-semialdehyde
L-aspartate 4-semialdehyde
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine