an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
creatinine
pimelate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
L-arginino-succinate
pseudouridine
ammonia
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
H2O
CO2
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
4-phosphooxy-L-threonine
5-amino-6-(D-ribitylamino)uracil
3-deoxy-α-D-manno-2-octulosonate
3-deoxy-D-manno-octulosonate 8-phosphate
urea
L-canavanine
selenophosphate
5-amino-6-(5-phospho-D-ribosylamino)uracil
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
4'-phosphopantetheine
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
4-methyl-2-oxopentanoate
hydrogen peroxide
pseudouridine 5'-phosphate
prenyl diphosphate
dethiobiotin
citrate
oxaloacetate
oxalosuccinate
7,8-diaminopelargonate
N-carbamoylputrescine
nicotinate adenine dinucleotide
β-nicotinate D-ribonucleotide
thiamine diphosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
thiamine phosphate
anthranilate
N-(5-phosphoribosyl)-anthranilate
orotidine 5'-phosphate
3-dehydroshikimate
shikimate
propionamide
4-guanidinobutanoate
4-guanidinobutyramide
(indol-3-yl)acetamide
acrylate
acrylamide
carbamoyl phosphate
coproporphyrinogen III
preuroporphyrinogen
isopentenyl diphosphate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
O-acetyl-L-serine
carbonic acid
xanthine
L-arogenate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
indole-3-ethanol
D-gluconate 6-phosphate
6-phospho D-glucono-1,5-lactone
2-dehydro-3-deoxy-D-gluconate 6-phosphate
3-phosphooxypyruvate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate 3-phosphate
phosphoenolpyruvate
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
8-amino-7-oxononanoate
glycerone phosphate
β-D-ribosylnicotinate
acetyl phosphate
(S)-dihydroorotate
pimeloyl-CoA
N-succinyl-2-amino-6-ketopimelate
N-succinyl-L,L-2,6-diaminopimelate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
H2
N-methylhydantoin
acetoacetate
4-methyl-3-oxoadipate
α-D-glucosamine 1-phosphate
enol-phenylpyruvate
P1,P4-bis(5'-guanosyl) tetraphosphate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1-deoxy-L-glycero-tetrulose 4-phosphate
S-methyl-5'-thioadenosine
S-adenosyl 3-(methylsulfanyl)propylamine
(R)-4'-phosphopantothenoyl-L-cysteine
(R)-4'-phosphopantothenate
ADP-L-glycero-β-D-manno-heptose
ADP-D-glycero-β-D-manno-heptose
(R)-pantothenate
lipid A disaccharide (E. coli)
lipid X
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
3-dehydroquinate
2-dehydropantoate
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
(R)-2,3-dihydroxy-3-methylpentanoate
lipid IVA
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
4-amino-4-deoxychorismate
prephenate
3-deoxy-D-arabino-heptulosonate 7-phosphate
porphobilinogen
glutathionylspermidine
2-C-methyl-D-erythritol 4-phosphate
hydrogen selenide
L-selenocystathionine
autoinducer 2
S-ribosyl-L-homocysteine
hydroxypyruvate
5-(methylsulfanyl)-α-D-ribose
quinolinate
DNA without lesion
glycolate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
2-oxopent-4-enoate
(3E)-2-oxopent-3-enoate
(2E)-2-hydroxypenta-2,4-dienoate
(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate
(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate
D-glycero-β-D-manno-heptose 1-phosphate
D-glycero-β-D-manno-heptose 1,7-bisphosphate
pseudaminate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
4-prenylphlorisobutyrophenone
norspermidine
carboxynorspermidine
carbon monoxide
2-(α-hydroxyethyl)thiamine diphosphate
core oligosaccharide-lipid A (E. coli K-12 core type)
propan-2-ol
2-amino-3-carboxymuconate-6-semialdehyde
N-acetyl-D-muramate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
2-iminoacetate
5-amino-6-(5-phospho-D-ribitylamino)uracil
7-epicholate
4-amino-2-methyl-5-pyrimidinemethanol
(2E,6E)-farnesyl diphosphate
riboflavin
thiamine
nicotinate
nicotinamide
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
N10-formyldihydrofolate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
FAD
FMN
FMNH2
NADH
NADPH
NAD+
NADP+
3-demethylubiquinol-8
menaquinol-8
ubiquinol-8
demethylmenaquinol-8
(S)-NADHX
(R)-NADHX
coenzyme A
acrylonitrile
(indole-3-yl)acetonitrile
preQ0
2-octaprenylphenol
5,10-methenyltetrahydrofolate mono-L-glutamate
superoxide
CMP-N-acetyl-β-neuraminate
1-oleoyl-2-lyso-glycerone phosphate
(2R)-2,3-dihydroxy-3-methylbutanoate
3-phospho-D-glyceroyl-phosphate
(R)-glycerate
2,3-diphospho-D-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
sn-glycerol 1-phosphate
oxygen
hydrogen sulfide
protoporphyrinogen IX
uroporphyrinogen-III
protoporphyrin IX
coproporphyrinogen I
uroporphyrinogen-I
protoheme
DNA with lesion
L-cysteinylglycine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
2-iminopropanoate
2-iminosuccinate
2-iminobutanoate
hypoglycin B
D-methionine
D-alanine
D-glutamate
L-histidine
L-tryptophan
L-phenylalanine
L-tyrosine
L-cysteine
L-glutamine
L-asparagine
L-serine
glycine
L-threonine
L-arginine
L-lysine
L-glutamate
L-aspartate
L-leucine
L-alanine
L-proline
N-carbamoylsarcosine
β-alanine
L-citrulline
L-isoleucine
L-valine
L-methionine
L-cystine
L-4-hydroxyglutamate semialdehyde
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-ornithine
L-canaline
L-aspartate 4-semialdehyde
hypoglycin A
L-homoserine
O-phospho-L-homoserine
S-sulfo-L-cysteine
L-homocysteine
L-glutamate-5-semialdehyde
meso-diaminopimelate
L-selenocysteine
L-aspartyl-4-phosphate
L,L-diaminopimelate
L-cystathionine
N-carbamoyl-L-aspartate
L-saccharopine
seleno-L-homocysteine
sarcosine
3-phospho-L-serine
guanosine 2',3'-cyclic monophosphate
adenosine 2',3'-cyclic monophosphate
ADP
ATP
5'-deoxyadenosine
GDP
GTP
hypoxanthine
2'-deoxyinosine
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
2'-deoxyadenosine
2'-deoxyguanosine
IMP
GMP
adenylo-succinate
dGDP
dADP
XMP
guanosine 3'-monophosphate
adenosine 3'-monophosphate
dGTP
ITP
IDP
dATP
dITP
dIDP
pppGpp
AMP
ppGpp
dGMP
dAMP
UDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose
UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose
UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine
UDP-N-acetyl-α-D-fucosamine
UDP-N-acetyl-α-D-quinovosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-glucosamine
GDP-4-dehydro-α-D-rhamnose
GDP-α-D-mannose
GDP-β-L-fucose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
CMP-3-deoxy-β-D-manno-octulosonate
CMP-pseudaminate
inosine
xanthosine
guanosine
adenosine
cytidine
uridine
5'-deoxy-5'-fluoroadenosine
preQ1
adenine
guanine
uracil
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
dTDP
dUDP
dCDP
dUTP
dCTP
dTTP
dTMP
dUMP
dCMP
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
CMP
UMP
UDP
CDP
UTP
CTP
cytidine-3'-monophosphate
uridine 3'-monophosphate
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydroneopterin
7,8-dihydromonapterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydroneopterin 3'-phosphate
7,8-dihydropteroate
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
orotate
(S)-1-pyrroline-5-carboxylate
urate
4-methylphenol
4-aminobenzoate
indole
(indol-3-yl)acetaldehyde
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
catechol
galactosyl-(glucosyl)3-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)2-(heptosyl)3-Kdo2-lipid A-bisphosphate
α-Kdo-(2→6)-lipid IVA
heptosyl-Kdo2-lipid IVA
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
heptosyl-Kdo2-lipid A
α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
(heptosyl)2-Kdo2-lipid A
glucosyl-(heptosyl)2-Kdo2-lipid A
glucosyl-(heptosyl)2-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
di-trans,octa-cis-undecaprenyl phosphate
trans,octacis-decaprenyl phosphate
geranyl diphosphate
geranylgeranyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
(3S)-linalool
(3R)-linalool
1-linoleoyl-sn-glycero-3-phosphocholine
1-oleoyl-sn-glycerol 3-phosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
dioleoyl phosphatidate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
1-palmitoyl-2-linoleoyl-phosphatidylcholine
phlorisovalerophenone
deoxycohumulone
deoxyhumulone
4-prenylphlorisovalerophenone
ferric-enterobactin complex
iron(III) dicitrate
3'-dephospho-CoA
acetyl-CoA
malonyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
succinyl-CoA
2-methylacetoacetyl-CoA
(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA
(E)-2-methylcrotonoyl-CoA
2-methylbutanoyl-CoA
oleoyl-CoA
propanoyl-CoA
butanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
3-oxoadipyl-CoA
4-methyl-3-oxoadipyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
crotonyl-CoA
D-glucono-1,5-lactone
D-gluconate
1-(β-D ribofuranosyl)nicotinamide
maltotriose
maltotetraose
sucrose
glycolaldehyde
D-glyceraldehyde
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
β-D-glucopyranose
α-D-glucopyranose
β-D-fructofuranose
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-neuraminate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-glucosamine
2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (S. aureus)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
sucrose 6F-phosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
4-phospho-D-erythronate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-mannopyranose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
L-fuculose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
α-D-mannose 1-phosphate
diacetyl
acetone
(S)-lactaldehyde
acetaldehyde
formaldehyde
butan-1-al
palmitate
butanoate
pyruvate
2-oxoglutarate
2-oxobutanoate
glyoxylate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
3-oxoadipate
acetate
formate
propanoate
(R)-lactate
(2R,3S)-2-methylisocitrate
chorismate
fumarate
succinate
(S)-malate
cis-2-methylaconitate
cis-aconitate
D-threo-isocitrate
(R)-pantoate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
acetamide
(indol-3-yl)acetate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
cholate
glycocholate
isocholate
3-dehydrocholate
ethylene glycol
ethanol
butan-1-ol
methanol
agmatine
spermidine
putrescine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
dimethyl sulfide
glutathione
3-sulfopyruvate
L-cysteate
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
trimethyl sulfonium
selenide
thiosulfate
nitrite
nitrate
hydrogencarbonate
molybdate
phosphonate
phosphate
diphosphate
triphosphate
Fe3+
Ni2+
Cu2+
Cd2+
Fe2+
H+
ammonium