an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
6-phospho D-glucono-1,5-lactone
oxalate
xanthine
indole-3-ethanol
4-amino-4-deoxychorismate
pyrazine-2-carboxylate
arsenite
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA
(R)-mevalonate diphosphate
(R)-5-phosphomevalonate
autoinducer 2
DNA without lesion
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
α-D-glucosamine 1-phosphate
ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
2-dehydro-3-deoxy-D-gluconate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
N-succinyl-L,L-2,6-diaminopimelate
H2
oxalosuccinate
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-2-aceto-2-hydroxybutanoate
(R)-4'-phosphopantothenoyl-L-cysteine
N5-carboxyaminoimidazole ribonucleotide
acetoacetate
carbon monoxide
4-amino-2-methyl-5-pyrimidinemethanol
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
7-epicholate
pseudouridine
mercuriphenyl acetate
quinolinate
L-arginino-succinate
ammonia
5-hydroxyindole thiazolidine carboxylate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
H2O
hydrogen peroxide
CO2
acetyl phosphate
D-gluconate 6-phosphate
O-D-alanyl-poly(ribitol phosphate)
poly(ribitol phosphate)
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
2-amino-2-deoxy-D-gluconate 6-phosphate
glycerone phosphate
dihydroxyacetone
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
N-acetyl-D-muramate 6-phosphate
salicyl alcohol
oxaloacetate
(R)-4'-phosphopantothenate
(R)-pantothenate
succinate semialdehyde
urea
L-canavanine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
3-keto-β-D-galactose
orotidine 5'-phosphate
carbamoyl phosphate
(S)-dihydroorotate
4-methylumbelliferyl glucoside
4-hydroxybenzaldehyde
scopolin
cis-coumarinic acid-β-D-glucoside
(S)-3-methyl-2-oxopentanoate
4-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
isopentenyl diphosphate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
O-acetyl-L-serine
hydrogen selenide
prenyl diphosphate
pseudouridine 5'-phosphate
5-hydroxyindole acetaldehyde
5-hydroxytryptophol
3-methoxy-4-hydroxyphenylglycolaldehyde
indole-3-glycol aldehyde
indole-3-glycol
isobutanol
3-methylbutanal
3-methylbutanol
2-methylbutanal
2-methylbutanol
2-phenylethanol
glutathione disulfide
phosphoenolpyruvate
L-selenocystathionine
3-phosphooxypyruvate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
glycolate
citrate
4'-phosphopantetheine
S-ribosyl-L-homocysteine
(R)-mevalonate
nicotinate adenine dinucleotide
β-nicotinate D-ribonucleotide
CDP-glycerol
ethanolamine
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(+)-7-epi-jasmonate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
isocholate
3-dehydrocholate
cholate
glycocholate
nicotinamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
pyrazinamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
putrescine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
2-iminopropanoate
α-D-glucosamine 6-phosphate
2,3-diphospho-D-glycerate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
oxygen
hydrogen sulfide
Hg0
protoporphyrin IX
protoporphyrinogen IX
hydrogen cyanide
adenosylcobyrate
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobalamin
cob(I)alamin
Na+
ammonium
H+
K+
Cu2+
Cd2+
Hg2+
trimethyl sulfonium
hydrogencarbonate
thiosulfate
phosphate
triphosphate
diphosphate
ethylphosphate
dimethyl sulfide
3-(methylsulfanyl)propanal
methionol
S-methyl-L-methionine
glutathione
3-sulfopyruvate
L-cysteate
DNA with lesion
5,10-methenyltetrahydrofolate mono-L-glutamate
1-oleoyl-2-lyso-glycerone phosphate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
L-homocysteine
N-acetyl-L-glutaminyl-L-glutamine amide
N-acetyl-L-glutaminyl-L-glutamine
L-alanyl-D-glutamate
glycyl-L-methionine
L-alanyl-L-aspartate
L-alanyl-L-glutamine
L-alanyl-glycine
L-alanyl-L-histidine
L-alanyl-L-leucine
L-alanyl-L-threonine
L-alanyl-L-glutamate
glycyl-L-asparagine
glycyl-L-glutamine
glycyl-L-glutamate
glycyl-L-aspartate
glycyl-L-proline
L-cysteinylglycine
D-alanyl-D-alanine
L-methionyl-L-alanine dipeptide
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
2-iminobutanoate
2-iminosuccinate
L-α-amino-ε-keto-pimelate
L-aspartyl-4-phosphate
seleno-L-homocysteine
N-carbamoyl-L-aspartate
3-phospho-L-serine
D-alanine
D-aspartate
D-glutamate
L-tyrosine
L-histidine
L-phenylalanine
L-cysteine
L-asparagine
glycine
L-glutamine
L-threonine
L-serine
L-aspartate
L-glutamate
L-arginine
L-lysine
L-proline
L-alanine
L-leucine
L-isoleucine
L-valine
L-selenocysteine
L-methionine
L-ornithine
L-cystathionine
L,L-diaminopimelate
L-citrulline
L-glutamate-5-semialdehyde
S-adenosyl-L-methionine
L-canaline
S-adenosyl-L-homocysteine
S-sulfo-L-cysteine
O-succinyl-L-homoserine
L-homoserine
O-phospho-L-homoserine
L-aspartate 4-semialdehyde
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
XMP
adenosine 3'-monophosphate
adenosine 2',3'-cyclic monophosphate
guanosine 3'-monophosphate
guanosine 2',3'-cyclic monophosphate
5'-deoxyadenosine
ADP
dGMP
2'-deoxyguanosine
ATP
dAMP
2'-deoxyadenosine
AMP
GMP
IMP
GDP
adenylo-succinate
GTP
dADP
dGDP
2'-deoxyinosine
dATP
dGTP
ppGpp
pppGpp
ADP-α-D-glucose
GDP-α-D-mannose
NADP+
NAD+
NADPH
NADH
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-galactofuranose
UDP-α-D-galactose
UDP-N-acetyl-α-D-mannosamine
UDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
adenine
uracil
cytidine-3'-monophosphate
uridine 3'-monophosphate
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
dCMP
dTMP
dUMP
dTDP
dCDP
dUDP
dCTP
dUTP
dTTP
CDP
UDP
β-nicotinamide D-ribonucleotide
UTP
CTP
UMP
CMP
2'-deoxycytidine
2'-deoxyuridine
thymidine
xanthosine
inosine
adenosine
cytidine
uridine
D-gluconate
L-gulonate
XXXG xyloglucan oligosaccharide
β-D-cellobiose
maltotriose
sucrose
melibiose
α-maltose
α-lactose
maltotetraose
maltopentaose
maltohexaose
maltoheptaose
stachyose
raffinose
XXLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
XLLG xyloglucan oligosaccharide
3'-ketolactose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
1-O-acetyl-α-maltose
D-galactosylononitol
galactinol
lotaustralin
arbutin-6-phosphate
salicin 6-phosphate
methyl β-D-glucoside 6-phosphate
taxiphyllin
linamarin
linustatin
neolinustatin
sucrose 6F-phosphate
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
α-lactose 6'-phosphate
β-D-cellobiose 6'-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (E. faecium, tetrapeptide)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
L-fuculose 1-phosphate
α-D-mannose 1-phosphate
α-D-glucopyranose 1-phosphate
α-D-galactose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
D-tagatofuranose 6-phosphate
D-tagatofuranose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-ribose-1-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
glycerol
D-mannitol
galactitol
L-arabinitol
β-D-fructofuranose
α-L-fucopyranose
β-L-fucopyranose
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-α-D-mannosamine
N-acetyl-β-D-glucosamine
D-glyceraldehyde
aldehydo-L-arabinose
aldehydo-D-ribose
β-D-ribopyranose
β-D-ribofuranose
α-D-ribofuranose
β-D-galactopyranose
α-D-galactopyranose
β-D-mannopyranose
β-D-glucopyranose
α-D-glucopyranose
aldehydo-D-mannose
L-fuculose
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
(2E,6E)-farnesyl diphosphate
4-methylumbelliferone
coumarin
scopoletin
(3E,5Z)-tetradeca-3,5-dienoyl-CoA
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
dioleoyl phosphatidate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-oleoyl-sn-glycerol 3-phosphate
myo-inositol
D-ononitol
hydroquinone
protocatechuate
3,4-dihydroxyphenylglycolaldehyde
3,4-dihydroxyphenylglycol
butan-1-ol
ethanol
propan-1-ol
phytol
methanol
(4-hydroxyphenyl)acetaldehyde
phenylacetaldehyde
phytenal
(S)-lactaldehyde
butan-1-al
acetaldehyde
1-propanal
isobutanal
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
acetate
orotate
(S)-1-pyrroline-5-carboxylate
aldehydo-D-glucuronate
stearate
palmitate
butanoate
13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate
13-sophorosyloxydocosanoate 6',6''-diacetate
sophorosyloxydocosanoate
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate
(3E,5Z)-tetradecadienoate
di-homo-γ-linolenate
3-oxoadipate
pyruvate
formate
(R)-lactate
(S)-lactate
(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate
2-hydroxy-4-oxobutane-1,2,4-tricarboxylate
cis-aconitate
3-carboxy-cis,cis-muconate
(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate
D-threo-isocitrate
chorismate
(3E)-2-oxohex-3-enedioate
fumarate
succinate
(S)-malate
2-oxobutanoate
2-oxoglutarate
glyoxylate
3-phenyl-2-oxopropanoate
4-aminobenzoate
benzene
4-tyrosol
(indol-3-yl)acetaldehyde
3-methoxy-4-hydroxyphenylglycol
coumarinate
(2R)-2-hydroxy-2-methylbutanenitrile
2-hydroxy-2-methylpropanenitrile
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
7,8-dihydroneopterin 3'-triphosphate
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
FMN
riboflavin
reduced riboflavin
FMNH2
nicotinate
pyridoxine 5'-phosphate
pyridoxine
pyridoxamine 5'-phosphate
pyridoxamine
pyridoxal 5'-phosphate
pyridoxal
coenzyme A
(R)-NADHX
(S)-NADHX
D-glucono-1,5-lactone
formyl-CoA
oxalyl-CoA
(+)-7-epi-jasmonoyl-CoA
dihomo γ-linolenoyl-CoA
(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA
(E)-2-methylcrotonoyl-CoA
2-methylbutanoyl-CoA
acetyl-CoA
3'-dephospho-CoA
succinyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
2-methylacetoacetyl-CoA
isobutanoyl-CoA
oleoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
hexadecanedioyl-CoA
palmitoyl-CoA
stearoyl-CoA
butanoyl-CoA
propanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
crotonyl-CoA