an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(S)-2,3,4,5-tetrahydrodipicolinate

N²-acetyl-L-2-aminoadipate semialdehyde

2-oxepin-2(3H)-ylideneacetyl-CoA

imidazole acetol-phosphate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

3-(cyclohexa-1,3-dien-1-yl)-2-oxopropanoate

3-dehydroquinate

N-acetylphosphinothricin tripeptide

glycerone phosphate

(S)-dihydroorotate

3-deoxy-D-arabino-heptulosonate 7-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

(2R,3S)-3-isopropylmalate

acetoacetate

D-erythro-imidazole-glycerol-phosphate

H₂

histidinal

2-ketocyclohexane-1-carbonyl-CoA

lipoamide

diethylphosphate

autoinducer 2

thiamine diphosphate

N^τ-methylhistamine

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

mycothiol-arsenate conjugate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

1-deoxy-L-glycero-tetrulose 4-phosphate

cyanate

(4-hydroxyphenyl)acetate

α, α'-trehalose 6,6'-bismycolate

4-hydroxybenzaldehyde

O-1,4-α-L-dihydrostreptosyl-streptidine 6-phosphate

coproporphyrinogen III

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2,6-dioxo-6-phenylhexa-3-enoate

S-(hydroxymethyl)mycothiol

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

2-amino-3-carboxymuconate-6-semialdehyde

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

N⁵-carboxyaminoimidazole ribonucleotide

2-oxoadipate

L-xylo-hex-3-ulono-1,4-lactone

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-carboxyhex-2-enoyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

cyclohex-1-ene-1-carbonyl-CoA

2-(4-hydroxyphenyl)-2-oxoacetate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

3-(2,3-dihydroxyphenyl)propanoate

pimelate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2S)-2-isopropyl-3-oxosuccinate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

ammonia

(S)-2-aceto-2-hydroxybutanoate

2-isopropylmaleate

5-phospho-β-D-ribosylamine

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(R)-2,3-dihydroxy-3-methylpentanoate

anthranilate

4-fumaryl-acetoacetate

hydroxypyruvate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

4'-phosphopantetheine

(R)-4'-phosphopantothenate

D-gluconate 6-phosphate

loganin

nigerose

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

3-(3-hydroxyphenyl)propanoate

pimeloyl-CoA

(S)-2-acetolactate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

thiamine phosphate

carbonic acid

dTDP-L-dihydrostreptose

phthalate 4,5-cis-dihydrodiol

hydrogenobyrinate

4-methyl-2-oxopentanoate

N-acetylglutamyl-phosphate

shikimate

xanthine

(S)-4-amino-5-oxopentanoate

adenosine 3',5'-bisphosphate

3-dehydroshikimate

hydrogenobyrinate a,c-diamide

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

oxalosuccinate

L-gulono-1,4-lactone

3-amino-3-deoxy-D-fructose 6-phosphate

α-ribazole 5'-phosphate

carbon monoxide

histamine

cyclohexanone

N-acetyl-L-glutamate 5-semialdehyde

porphobilinogen

O-ureido-L-homoserine

glutathione disulfide

N-ethylglycine

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

deoxycholoyl-CoA

5-carboxymethyl-2-hydroxymuconate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

acrylate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

cis,cis-muconate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

benzoylsuccinyl-CoA

mercuriphenyl acetate

2,5-didehydro-D-gluconate

L-3-cyclohex-2'-enylalanine

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

5-amino-6-(D-ribitylamino)uracil

γ-L-glutamyl 5-phosphate

acrylamide

iminodiacetate

L-canavanine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

phosphoenolpyruvate

N¹-(5-phospho-β-D-ribosyl)glycinamide

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

D-kanosamine 6-phosphate

2-succinylbenzoate

urea

histidinol

3-phenylpropanoate

5-deoxy-5-amino-3-dehydroquinate

prenyl diphosphate

(E)-3-(methoxycarbonyl)pent-2-enedioate

2,3-didehydroadipyl-CoA

CDP-N-methyl-L-glucosamine

adenosine 5'-phosphosulfate

prephytoene diphosphate

chloroacetaldehyde

5,7,24(28)-ergostatrienol

(indol-3-yl)pyruvate

D-glycero-α-D-manno-heptose 1-phosphate

(S)-4-hydroxy-2-oxopentanoate

1,4-dihydroxy-2-naphthoyl-CoA

5,6-dimethylbenzimidazole

1,4-dihydroxy-2-naphthoate

bialaphos

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

2-keto-D-gluconate

carbamoyl phosphate

tryptamine

(S)-3-methyl-2-oxopentanoate

AP site on DNA created by glycosylase in repair process

7-carboxy-7-deazaguanine

(E)-2-benzylidenesuccinyl-CoA

2-oxopent-4-enoate

phenylglyoxylate

S-methyl-5'-thioadenosine

3-oxopropanoate

5-aminolevulinate

propanoyl phosphate

3-α(S)-strictosidine

acetyl phosphate

methylamine

dihydrostreptomycin 6-phosphate

nicotinate adenine dinucleotide

(R)-1-amino-2-propanol O-2-phosphate

3-phosphonopyruvate

phthalate

oxaloacetate

12α-hydroxy-3-oxocholan-24-oyl-CoA

N²acetyl-L-2-aminoadipate 6-phosphate

7,8-diaminopelargonate

shikimate 3-phosphate

3-[(1S)-cyclohex-3-en-1-yl)]-2-oxopropanoate

hydrogen selenide

ε-caprolactone

muconolactone

streptomycin 6-phosphate

4-amino-2-methyl-5-pyrimidinemethanol

glycolate

macrocin

6-deoxyerythronolide B

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

CO₂

carbonyl sulfide

prephenate

8-amino-7-oxononanoate

O-acetyl-L-serine

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

4-amino-4-deoxychorismate

1-piperideine 6-carboxylate

L-arginino-succinate

α-ribazole

nitrilotriacetate

3-amino-5-hydroxybenzoate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-methyl-2-oxobutanoate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N-succinyl-2-amino-6-ketopimelate

3-sulfinopyruvate

5-amino-6-(5-phospho-D-ribosylamino)uracil

3-phosphooxypyruvate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

vanillin

(S)-2-amino-6-oxohexanoate

4-aminobutanoate

dihydrolipoamide

L-histidinol phosphate

streptidine 6-phosphate

2-iminoacetate

2,5-dioxopentanoate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-chloroethanol

selenophosphate

(R)-4'-phosphopantothenoyl-L-cysteine

N-succinyl-L,L-2,6-diaminopimelate

α-D-glucosamine 1-phosphate

(2S)-2-isopropylmalate

N-acetyldemethylphosphinothricin tripeptide

5-amino-6-(5-phospho-D-ribitylamino)uracil

(S)-2,3-dihydrodipicolinate

5-enolpyruvoyl-shikimate 3-phosphate

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

2-aminoacetaldehyde

5-amino-5-deoxy-3-dehydroshikimate

H₂O

orotidine 5'-phosphate

isochorismate

4-guanidinobutyramide

diethylthiophosphate

β-nicotinate D-ribonucleotide

2-oxoglutaramate

3-oxo-5,6-didehydrosuberyl-CoA

canavaninosuccinate

dimethylthiophosphate

N¹-amidinostreptamine 6-phosphate

D-mannopyranosyl-1-phosphoheptaprenol

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

quinolinate

6-phospho D-glucono-1,5-lactone

(indol-3-yl)acetamide

3'-phosphoadenylyl-sulfate

oxalate

S-adenosyl 3-(methylsulfanyl)propylamine

mycothione

FK-506

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

(E)-4-coumaroyl-CoA

ethylamine

(2,3-dihydroxybenzoyl)adenylate

4-guanidinobutanoate

urea-1-carboxylate

2-maleylacetate

1-deoxy-1-imino-D-erythrose 4-phosphate

2-C-methyl-D-erythritol 4-phosphate

creatinine

dethiobiotin

D-glycero-α-D-manno-heptose 1,7-bisphosphate

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

3-oxocholoyl-CoA

N,N-dimethylaniline-N-oxide

1,2-dichloroethane

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

dehydroprephenate

3,4-dideoxy-4-amino-D-arabino-heptulosonate 7-phosphate

31-O-desmethylFK-506

preuroporphyrinogen

S-ribosyl-L-homocysteine

N-(5-phosphoribosyl)-anthranilate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

(R)-pantothenate

secologanin

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7-epicholate

isopentenyl diphosphate

S-acetyldihydrolipoamide

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate

2-hydroxy-cyclohexane-1-carbonyl-CoA

2-dehydropantoate

N,N-dimethylaniline

hydrogen peroxide

succinate semialdehyde

citrate

(2S)-lactyl-2-diphospho-5'-guanosine

(2E,6E)-farnesyl diphosphate

phenylacetate

2-chloroacetate

an unknown oxygen source

FADH₂

FMN

FMNH₂

FAD

NADH

NADPH

(S)-NADHX

(R)-NADHX

ubiquinone-8

oxidized Reactive Blue 5

Reactive Blue 5

demethylmenaquinol-8

ubiquinol-8

menaquinol-8

NAD⁺

NADP⁺

glycine betaine

5'-chloro-5'-deoxyadenosine

(+)-5-chloromuconolactone

5-chloro-4-hydroxy-2-oxopentanoate

2-chloro-cis,cis-muconate

4-chloro-crotonyl-CoA

5-chloro-5-deoxy-D-ribono-γ-lactone

5-chloro-5-deoxy-D-ribose

5-chloro-5-deoxyribose 1-phosphate

chloroethylmalonyl-CoA

5-chloro-5-deoxy-D-ribonate

4-chloro-3-hydroxybutyryl-CoA

2,5-dichlorophenol

3-chlorocatechol

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

nicotinamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

carboxyphosphinopyruvate

2-phosphono-formylglycerate

phosphonoformate

2-(phosphonoylmethyl)malate

demethyl-L-phosphinothricin

3-(hydroxyphosphinoyl)pyruvate

deamino α-keto demethylphosphinothricin

3-(hydroxyphosphonoylmethyl)malate

N-acetyldemethyl-L-phosphinothricin

phosphonoformaldehyde

hydroxymethylphosphonate

2-hydroxyethylphosphonate

1-carboxyvinyl carboxyphosphonate

CMP-5'-phosphonoformate

phosphonoacetaldehyde

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

L-homocysteine

4-methylphenol

glycolaldehyde

(Z)-3-hexanal

(S)-lactaldehyde

(E)-2-hexenal

α-D-galactopyranose

β-D-galactopyranose

β-D-mannopyranose

α-D-glucopyranose

β-D-glucopyranose

D-glyceraldehyde

aldehydo-D-mannose

L-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

benzaldehyde

formaldehyde

acetaldehyde

1-octanal

butan-1-al

methylglyoxal

menadione

(R)-acetoin

(S)-acetoin

diacetyl

4-hydroxyacetophenone

acetone

2-((1R,3S),-1',9'-dihydroxy-1'-methyl-10'-oxo-3',4',5',10'-tetrahydro-1H-benzo[g]isochromen-3'-yl)acetate

(S)-4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-hydroxybutanoate

(S)-DNPA

4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-oxobutanoate

5-deoxy-dihydrokalafungin

actinorhodin

dihydrokalafungin

actinorhodin intermediate

tylosin

3-α-mycarosylerythronolide B

erythromycin D

streptomycin

erythronolide B

deoxypumiloside

pumiloside

strictosamide

vanillylamine

camptothecin

(-)-trans-carveol

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(-)-carvone

rhodovibrin

torulene

spirilloxanthin

anhydrorhodovibrin

hydroxyspirilloxanthin

rhodopin

3,4-didehydrorhodopin

all-trans-3,4-didehydrolycopene

β-carotene

all-trans-lycopene

γ-carotene

all-trans neurosporene

15-cis-phytoene

all-trans phytofluene

9,15,9'-tri-cis-ζ-carotene

all-trans-ζ-carotene

neurosporaxanthin

apo-4'-lycopenoate

2-oxospirilloxanthin

2,2'-dioxospirilloxanthin

hydrogen cyanide

nitrous oxide

sn-glycerol 3-phosphate

D-gluconate

aldehydo-L-galactonate

L-gulonate

aldehydo-D-galacturonate

maltotriose

mycobacterial arabinogalactan containing α(1->3) arabinofuran linkages

mycobacterial arabinogalactan containing extended α(1->3) arabinofuran linkages

mycobacterial arabinogalactan primed with arabinofuran

mycobacterial arabinogalactan containing linear arabinofuran

mycobacterial arabinogalactan containing α(1->3) and β(1->2) arabinofuran linkages

neocarrabiose sulfate

neocarrabiose

neocarratetraose 4-O-sulfate

neocarratetraose 4-O-disulfate

β-D-fructofuranose

glycerol

D-mannitol

kanosamine

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

sucrose

α,α-trehalose

α-maltose

maltotetraose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-glycero-α-D-manno-heptose 7-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

6-deoxy-5-ketofructose 1-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

α-D-mannose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-galactofuranosyl-(1→5)-β-D-galactofuranosyl-(1→4)-α-L-rhamnopyranosyl-(1→3)-N-acetyl-α-D-glucosaminyl-diphospho-trans,octacis-decaprenol

[β-D-galactofuranosyl-(1→5)-β-D-galactofuranosyl-(1→6)]₁₄-β-D-galactofuranosyl-(1→5)-β-D-galactofuranosyl-(1→4)--L-rhamnopyranosyl-(1→3)-N-acetyl-α-D-glucosaminyl-diphospho-trans,octacis-decaprenol

UDP-D-galactose

UDP-α-D-galactofuranose

UDP-α-D-galacturonate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-α-D-xylose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

ADP-α-D-glucose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-4-dehydro-6-deoxy-α-D-glucose

GDP-α-D-mannose

GDP-D-glycero-α-D-manno-heptose

dTDP-α-D-glucose

dTDP-D-desosamine

dTDP-β-L-mycarose

dTDP-4-dehydro-β-L-rhamnose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-β-L-rhamnose

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

a peptidoglycan dimer (meso-diaminopimelate containing)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ammonium hydroxide

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(2E,5Z)-tetradecenoyl-CoA

malonyl-CoA

malonyl-CoA methyl ester

glutaryl-CoA

benzoyl-CoA

2-methylbutanoyl-CoA

linoleoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

isobutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

formyl-CoA

choloyl-CoA

(E)-2-methylcrotonoyl-CoA

oxalyl-CoA

4-hydroxybenzoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

trans-feruloyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

methylacrylyl-CoA

4-hydroxy-3-methoxyphenyl-β-hydroxypropanoyl-CoA

phenylacetyl-CoA

3'-dephospho-CoA

phytanoyl-CoA

crotonyl-CoA

oleoyl-CoA

palmitoyl-CoA

stearoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

octanoyl-CoA

2-hydroxyphytanoyl-CoA

propanoyl-CoA

butanoyl-CoA

cerotoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

2-carboxy-cerotoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

(S)-malyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

D-glucono-1,5-lactone

L-galactono-1,4-lactone

cis-dienelactone

trans-dienelactone

betaine aldehyde

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

putrescine

cadaverine

spermidine

L-α-amino-ε-keto-pimelate

carbamate

L-2-aminoadipate

L-glutamate

D-glutamate

L-lysine

L-histidine

L-arginine

D-aspartate

D-alanine

L-phenylalanine

L-tyrosine

L-tryptophan

L-alanine

L-serine

L-cysteine

L-leucine

L-aspartate

L-asparagine

L-glutamine

L-cystathionine

L-valine

L-isoleucine

L-aspartyl-4-phosphate

L-threonine

L-ornithine

L-proline

L-methionine

L,L-diaminopimelate

N-acetyl-L-ornithine

N-carbamoyl-L-aspartate

L-citrulline

L-homoserine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

O-succinyl-L-homoserine

3-sulfino-L-alanine

S-adenosyl-L-homocysteine

L-canaline

S-adenosyl-L-methionine

meso-diaminopimelate

glycine

2-hydroxy-5-oxoproline

L-saccharopine

S-methyl-L-methionine

sarcosine

3-phospho-L-serine

N-acetyl-L-glutamate

O-acetyl-L-homoserine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

riboflavin

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

6-carboxy-5,6,7,8-tetrahydropterin

7,8-dihydropteroate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

7,8-dihydrofolate monoglutamate

salinosporamide A

1-piperideine

adenosylcobalamin

cob(II)alamin

methylcob(III)alamin

cob(I)alamin

sirohydrochlorin

cobyrinate

precorrin-8x

precorrin-4

precorrin-2

precorrin-3B

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

precorrin-7

precorrin-5

precorrin-6B

precorrin-3A

precorrin-6A

precorrin-1

cytosine

dTMP

dTTP

UTP

dUMP

uracil

dUTP

dTDP

dUDP

UDP

CDP

dCMP

dCTP

orotate

CTP

dCDP

cytidine

uridine

thymidine

2'-deoxyuridine

2'-deoxycytidine

UMP

CMP

guanine

adenine

dGDP

dADP

dAMP

dGMP

dGTP

dATP

ATP

GTP

GDP

ADP

AMP

GMP

XMP

IMP

hypoxanthine

xanthosine

adenosine

inosine

guanosine

2'-deoxyguanosine

2'-deoxyinosine

2'-deoxyadenosine

isoguanine

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

6-O-cis-methoxy-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

6-O-trans-methoxy-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

trehalose-cis-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

6-O-cis-keto-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

trehalose-cis-methoxy-mono-mycolate

trehalose-cis-keto-di-mycolate

α, α'-trehalose 6-α-mycolate

trehalose-trans-keto-di-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-keto-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

trehalose-cis-methoxy-di-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-di-mycolate

6-O-mycolyl-β-D-mannopyranosyl-1-phosphoheptaprenol

trehalose-trans-keto-mono-mycolate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

S-(hydroxymethyl)glutathione

dimethyl sulfide

glutathione

thiocyanate

mycothiol

methanethiol

S-sulfanylglutathione

L-cysteate

3-sulfopyruvate

taurine

(2R)-3-sulfolactate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

(R)-S-lactoylglutathione

trimethyl sulfonium

sulfate

sulfite

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

arsenate

superoxide

chloride

phosphate

diphosphate

triphosphate

Fe³⁺

K⁺

ammonium

H⁺

Hg²⁺

Co²⁺

Mg²⁺

Fe²⁺

ppGpp

8-oxo-GTP

8-oxo-dGTP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5'-deoxyadenosine

cyclic-AMP

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

β-nicotinamide D-ribonucleotide

2-hydroxy-dATP

5-hydroxy-CTP

cyclic di-3',5'-guanylate

androsterone

17β-estradiol

estrone

(indol-3-yl)acetate

coenzyme A

oxidized coenzyme F₄₂₀-2

oxidized coenzyme F₄₂₀-0

oxidized coenzyme F₄₂₀-1

acrylonitrile

preQ₀

(S)-3-hydroxy-isobutanoate

(2R,3S)-2-methylisocitrate

(S)-lactate

(R)-lactate

(R)-glycerate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

trans-cinnamate

2,3-dihydroxybenzoate

protocatechuate

4-aminobenzoate

benzoate

3-oxoadipate

oleate

(3E,5Z)-tetradecadienoate

linoleate

palmitate

stearate

butanoate

octanoate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

pyruvate

2-oxobutanoate

glyoxylate

2-oxoglutarate

acetate

formate

propanoate

(R)-pantoate

aldehydo-D-glucuronate

cis-aconitate

(1R,2S)-homoisocitrate

cis-homoaconitate

(2R)-homocitrate

cis-2-methylaconitate

(2S,3S)-2-methylcitrate

trans-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

chorismate

fumarate

succinate

(S)-malate

hydrogen sulfide

oxygen

Hg⁰

β-D-galactofuranosyl-(1→4)-α-L-rhamnopyranosyl-(1→3)-N-acetyl-α-D-glucosaminyl-diphospho-trans,octacis-decaprenol

trans,octacis-decaprenylphospho-β-D-erythro-pentofuranosid-2-ulose

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

α-L-rhamnopyranosyl-(1→3)-N-acetyl-α-D-glucosaminyl-diphospho-trans,octacis-decaprenol

trans,octacis-decaprenylphospho-β-D-ribofuranose

N-acetyl-α-D-glucosaminyl-diphospho-trans,octacis-decaprenol

decaprenyl-phosphoryl-β-D-arabinofuranose

(E)-2-hexenol

(3Z)-hex-3-en-1-ol

myo-inositol

1-amino-1-deoxy-scyllo-inositol

D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol

1-guanidino-1-deoxy-scyllo-inositol

D-1-guanidino-1-deoxy-3-dehydro-scyllo-inositol

1-keto-D-chiro-inositol

1-amino-1-deoxy-scyllo-inositol 4-phosphate

1-guanidino-1-deoxy-scyllo-inositol 4-phosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

catechol

dopamine

biphenyl-2,3-diol

(R,R)-2,3-butanediol

butan-1-ol

ethanol

1-octanol

AP site removed from DNA

cholest-4-en-3-one

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

episterol

cholesterol

5α-androstane-3,17-dione

deoxycholate

isocholate

cholate

glycocholate

3-dehydrocholate

2-iminobutanoate

2-iminosuccinate

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

cob(I)yrinate a,c-diamide

magnesium-protoporphyrin IX 13-monomethyl ester

cobalt-factor III

cobalt-sirohydrochlorin

3,8-divinyl protochlorophyllide a

adenosylcobinamide-GDP

cob(I)inamide

cob(II)yrinate a,c-diamide

protochlorophyllide a

adenosylcobyrate

chlorophyllide a

Mg-protoporphyrin

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

adenosyl-cobinamide phosphate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobinamide

protoheme

5,10-methenyltetrahydrofolate mono-L-glutamate

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

uroporphyrinogen-III

(Z,Z)-biliverdin-IX α

thiamine

L-ascorbate

nicotinate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine

pyridoxine

pyridoxamine 5'-phosphate

pyridoxal

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

1-chloro-2,4-dinitrobenzene

paraoxon

2,4-dinitrophenyl-S-glutathione

parathion

4-nitrophenol

monodehydroascorbate radical

hydroxyl radical

nitric oxide

urate

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

benzene

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

ferulate

3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate

3-methoxy-4-hydroxy-5-all-trans-decaprenylbenzoate

3-methoxy-4-hydroxy-5-all-trans-nonaprenylbenzoate

3-methoxy-4-hydroxy-5-all-trans-heptaprenylbenzoate

3-methoxy-4-hydroxy-5-all-trans-octaprenylbenzoate

methyl parathion

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

3,4-dihydroxy-5-all-trans-hexaprenylbenzoate

3,4-dihydroxy-5-all-trans-heptaprenylbenzoate

3,4-dihydroxy-5-all-trans-nonaprenylbenzoate

3,4-dihydroxy-5-all-trans-octaprenylbenzoate

3,4-dihydroxy-5-all-trans-decaprenylbenzoate

guaiacol

3-methoxytyramine

(2S)-2-phospholactate