ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C6361

acetoacetate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C12848

N5-carboxyaminoimidazole ribonucleotide

C891

citrate

C12364

isopentenyl diphosphate

C1519

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

C11653

shikimate

C12352

(S)-dihydroorotate

C11988

mesaconate

C12176

histidinol

C11539

xanthine

C12164

H2

C1186

5-oxo-L-proline

C12369

3-dehydroquinate

C13964

N-dimethylethanolamine phosphate

C6444

oxaloacetate

C11654

selenophosphate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C9422

nicotinate adenine dinucleotide

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C11772

O-phosphoethanolamine

C11543

H2O

C13985

(R)-5-phosphomevalonate

C14092

N-methylethanolamine phosphate

C11800

(R)-pantothenate

C11874

N-succinyl-2-amino-6-ketopimelate

C6369

(S)-2-aceto-2-hydroxybutanoate

C1002

anthranilate

C12125

imidazole acetol-phosphate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C12325

1,4-dihydroxy-2-naphthoate

C939

butanoyl phosphate

C7865

urea

C12390

D-erythro-imidazole-glycerol-phosphate

C11748

pseudouridine 5'-phosphate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C12054

L-dehydro-ascorbate

C11832

orotidine 5'-phosphate

C2191

carbamoyl phosphate

C12254

ethanolamine

C12394

6-phospho D-glucono-1,5-lactone

C928

CO2

C4674

glutathione disulfide

C11930

N-acetylglutamyl-phosphate

C13630

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C11652

shikimate 3-phosphate

C11802

4'-phosphopantetheine

C14074

prenyl diphosphate

C11701

α-D-ribose 1,5-bisphosphate

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C13284

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

C13913

N-carbamoylputrescine

C15181

(S)-5-amino-3-oxohexanoate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C14202

hexulose 6-phosphate

C921

CDP-N-methylethanolamine

C13824

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C14218

L-β-lysine

C1010

ammonia

C14003

N-acetyl-L-glutamate 5-semialdehyde

C13879

(R)-mevalonate diphosphate

C1325

4-amino-4-deoxychorismate

C12056

L-arginino-succinate

C11836

hydroxypyruvate

C352

2-iminoacetate

C1108

acetyl phosphate

C1268

(R)-4'-phosphopantothenate

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C12139

preuroporphyrinogen

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C11838

2-succinylbenzoate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C1184

5-phospho-β-D-ribosylamine

C13283

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

C12218

α-D-glucosamine 1-phosphate

C13946

5-(methylsulfanyl)-α-D-ribose

C1431

3-dehydroshikimate

C12456

CDP-N-dimethylethanolamine

C10349

glycerone phosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C12020

lipoamide

C1555

(S)-2,3-dihydrodipicolinate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C3417

(S)-3-methyl-2-oxopentanoate

C12096

isochorismate

C3656

D-gluconate 6-phosphate

C11754

propanoyl phosphate

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C13854

hydrogen selenide

C11606

thiamine phosphate

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C1196

S-methyl-5'-thioadenosine

C11857

β-nicotinate D-ribonucleotide

C13281

1,4-dihydroxy-2-naphthoyl-CoA

C12333

dihydrolipoamide

C12178

histidinal

C15341

N-tetradecanoylglycyl-peptide

C11760

prephenate

C1345

3-sulfinopyruvate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C11479

phosphoenolpyruvate

C12044

L-histidinol phosphate

C12162

hydrogen peroxide

C1231

5-aminolevulinate

C13723

arsenite

C11604

thiamine diphosphate

C1024

aminoacetone

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C13546

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

C11773

phosphocholine

C11873

N-succinyl-L,L-2,6-diaminopimelate

C15331

glycyl-peptide

C1633

(R)-1-aminopropan-2-ol

C1407

3-hydroxypropanoate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C873

coproporphyrinogen III

C6349

3-oxopropanoate

C12214

(S)-4-amino-5-oxopentanoate

C623

(3S,5S)-3,5-diaminohexanoate

C11715

quinolinate

C11946

N-(5-phosphoribosyl)-anthranilate

C1538

2-C-methyl-D-erythritol 4-phosphate

C11767

porphobilinogen

C11964

(R)-mevalonate

C6293

3-(all-trans-octaprenyl)benzene-1,2-diol

C8835

β-D-fructofuranose

C3731

glycerol

C13570

N-acetyl-β-D-mannosamine

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2109

α-D-galactopyranose

C5987

β-L-galactopyranose

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C2858

glycolaldehyde

C10693

sucrose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C15289

D-sedoheptulose 7-phosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10340

D-erythrose 4-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C8821

β-L-galactose 1-phosphate

C8813

α-D-mannose 1-phosphate

C8811

α-D-glucopyranose 1-phosphate

C8815

α-D-galactose 1-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2057

α-D-ribose-1-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C7444

UDP-N-acetyl-α-D-glucosamine

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C993

GDP-4-dehydro-6-deoxy-β-L-galactose

C1025

GDP-β-L-gulose

C1009

GDP-α-D-mannose

C1043

GDP-4-dehydro-α-D-rhamnose

C987

GDP-β-L-galactose

C979

GDP-α-D-rhamnose

C10263

ADP-α-D-glucose

C9884

ADP-D-ribose

C5615

D-glyceraldehyde 3-phosphate

C11485

D-gluconate

C3315

3-(4-hydroxyphenyl)pyruvate

C3345

3-phenyl-2-oxopropanoate

C8950

chorismate

C6442

succinate

C6443

fumarate

C5596

L-aspartate

C2802

(S)-malate

C5595

L-cystathionine

C5642

L-arginine

C5609

L-glutamine

C5584

L-lysine

C5588

L-leucine

C5607

L-glutamate

C5597

L-alanine

C5605

L-histidine

C5573

L-tyrosine

C5583

L-methionine

C12073

L-aspartyl-4-phosphate

C5579

L-serine

C12231

L-ornithine

C5643

L-asparagine

C5580

L,L-diaminopimelate

C2469

L-phenylalanine

C5575

L-tryptophan

C5603

L-isoleucine

C5612

L-cysteine

C5577

L-threonine

C15000

N-acetyl-L-ornithine

C5462

N-formyl-L-methionine

C13322

N-carbamoyl-L-aspartate

C11441

β-alanine

C12201

L-2-amino-3-oxobutanoate

C6532

(2S, 3S)-3-methylaspartate

C14973

N-acetyl-L-glutamate

C12303

L-citrulline

C12203

S-adenosyl-L-homocysteine

C12229

O-phospho-L-homoserine

C12247

L-homocysteine

C12227

O-succinyl-L-homoserine

C12245

L-homoserine

C12263

1-aminocyclopropane-1-carboxylate

C12293

3-sulfino-L-alanine

C15292

S-adenosyl-L-methionine

C12239

L-aspartate 4-semialdehyde

C5585

meso-diaminopimelate

C12067

glycine

C13463

(2R,3S)-2-methylisocitrate

C6186

(S)-lactate

C11476

(R)-glycerate

C6185

(R)-lactate

C11517

acetate

C11481

orotate

C3308

pyruvate

C3351

glyoxylate

C3257

2-oxobutanoate

C3301

2-oxoglutarate

C3086

4-(methylsulfanyl)-2-oxobutanoate

C11409

2,3-dihydroxybenzoate

C8974

4-aminobenzoate

C3409

octanoate

C3418

butanoate

C3420

propanoate

C3421

formate

C8544

cis-2-methylaconitate

C8534

cis-aconitate

C8542

(2S,3S)-2-methylcitrate

C8531

D-threo-isocitrate

C2242

(S)-3-aminobutanoyl-CoA

C4901

succinyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C4937

3'-dephospho-CoA

C5309

3-hydroxypropanoyl-CoA

C5296

acryloyl-CoA

C4913

malonyl-CoA

C5298

acetyl-CoA

C4927

(E)-glutaconyl-CoA

C4924

glutaryl-CoA

C14677

octanoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C5890

myristoyl-CoA

C2008

acetoacetyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C1337

crotonyl-CoA

C7343

(S)-malyl-CoA

C10076

L-galactono-1,4-lactone

C7121

oxygen

C10996

nicotinamide

C10986

L-ascorbate

C10982

nicotinate

C10994

thiamine

C10597

7,8-dihydrofolate monoglutamate

C15287

tetrahydrofolate-L-glutamate

C7129

5,6,7,8-tetrahydrofolate

C7134

tetrahydropteroyl tri-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C4208

pyridoxine

C4216

pyridoxamine

C4188

pyridoxamine 5'-phosphate

C4210

pyridoxal 5'-phosphate

C4200

pyridoxal

C4214

pyridoxine 5'-phosphate

C9077

(2E,6E)-farnesyl diphosphate

C7016

sulfite

C7036

hydrogencarbonate

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C4320

H+

C11023

Fe2+

C11019

Ca2+

C6090

methylglyoxal

C5468

ubiquinone-8

C3529

1-octanal

C3483

formaldehyde

C3500

acetaldehyde

C8321

geranyl diphosphate

C2727

enterobactin

C6624

protoheme

C12545

ethene

C4678

glutathione

C4580

(R)-S-lactoylglutathione

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C10301

agmatine

C3572

aminopropylcadaverine

C3576

cadaverine

C3574

spermidine

C3548

putrescine

C3564

spermine

C2179

choline

C13422

hydrogen cyanide

C6287

2-octaprenylphenol

C6596

2-iminosuccinate

C6043

4-methylphenol

C7809

AMP

C7811

XMP

C7745

GTP

C7844

ATP

C7785

hypoxanthine

C7823

dADP

C7840

dGMP

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C7827

GMP

C7741

IMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7751

dGTP

C7795

GDP

C7783

dATP

C7807

dGDP

C7643

cyclic-GMP

C7757

ADP

C10288

adenylo-succinate

C5552

5'-deoxyadenosine

C2702

cytidine

C2706

uridine

C15091

inosine

C15088

adenosine

C15094

xanthosine

C15085

guanosine

C2527

2'-deoxyuridine

C2523

2'-deoxycytidine

C2519

thymidine

C4018

NADP+

C4020

NAD+

C14497

NADPH

C14500

NADH

C9454

adenine

C9455

guanine

C8739

uracil

C8707

cytosine

C10287

CDP-ethanolamine

C13346

CDP-choline

C2245

CMP

C2241

UMP

C8744

dTMP

C8770

dUMP

C8732

CDP

C8714

UDP

C8760

UTP

C8761

CTP

C4243

β-nicotinamide D-ribonucleotide

C8724

dUTP

C8764

dTTP

C8772

dCTP

C8733

dCDP

C8720

dTDP

C8752

dUDP

C10527

myo-inositol

C6488

phytate

C3456

D-myo-inositol (3,4)-bisphosphate

C6473

D-myo-inositol 1,3,4,5,6-pentakisphosphate

C3467

D-myo-inositol (3,4,6)-trisphosphate

C5410

D-myo-inositol (3,4,5,6)-tetrakisphosphate

C13573

1D-myo-inositol 3-monophosphate

C5871

1-octanol

C3450

ethanol

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C12862

4-nitrophenol

C12980

4-nitrophenyl phosphate

C7666

protoporphyrinogen IX

C7676

protoporphyrin IX

C7658

uroporphyrinogen-III

C8419

sn-glycerol 3-phosphate

C5383

all-trans-octaprenyl diphosphate

C4553

3-octaprenyl-4-hydroxybenzoate

C6617

N-acetyl-D-mannosamine 6-phosphate

C6934

4-hydroxybenzoate

C3093

urate

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C1863

demethylmenaquinol-8

C1867

3-demethylubiquinol-8

C5543

ubiquinol-8

C1680

menaquinol-8

C2879

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

C9501

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

C6277

2-methoxy-6-(all-trans-octaprenyl)phenol

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6757

(S)-citramalate

C10053

FAD

C10050

FADH2

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12708

7,8-dihydroneopterin 3'-phosphate

C12664

7,8-dihydroneopterin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C10609

7,8-dihydropteroate

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C10614

coenzyme A

C1328

L-cysteinylglycine

C8518

γ-L-glutamyl-L-cysteine