ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1202

(S)-5-hydroxyisourate

C11964

(R)-mevalonate

C1186

5-oxo-L-proline

C912

chloroacetaldehyde

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C11653

shikimate

C11832

orotidine 5'-phosphate

C13946

5-(methylsulfanyl)-α-D-ribose

C12355

dethiobiotin

C873

coproporphyrinogen III

C11988

mesaconate

C12048

γ-L-glutamyl 5-phosphate

C12056

L-arginino-succinate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C921

CDP-N-methylethanolamine

C3656

D-gluconate 6-phosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C13283

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

C12214

(S)-4-amino-5-oxopentanoate

C12369

3-dehydroquinate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C1108

acetyl phosphate

C1555

(S)-2,3-dihydrodipicolinate

C12325

1,4-dihydroxy-2-naphthoate

C12333

dihydrolipoamide

C11654

selenophosphate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C6349

3-oxopropanoate

C12364

isopentenyl diphosphate

C12254

ethanolamine

C6574

(S)-ureidoglycolate

C11802

4'-phosphopantetheine

C14092

N-methylethanolamine phosphate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C11930

N-acetylglutamyl-phosphate

C13281

1,4-dihydroxy-2-naphthoyl-CoA

C13879

(R)-mevalonate diphosphate

C12020

lipoamide

C13944

N-dimethylethanolamine

C12044

L-histidinol phosphate

C14202

hexulose 6-phosphate

C13928

urea-1-carboxylate

C1268

(R)-4'-phosphopantothenate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C11539

xanthine

C11606

thiamine phosphate

C6369

(S)-2-aceto-2-hydroxybutanoate

C12125

imidazole acetol-phosphate

C1196

S-methyl-5'-thioadenosine

C11873

N-succinyl-L,L-2,6-diaminopimelate

C11701

α-D-ribose 1,5-bisphosphate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C12390

D-erythro-imidazole-glycerol-phosphate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C2263

4-prenylphlorisobutyrophenone

C928

CO2

C14074

prenyl diphosphate

C12456

CDP-N-dimethylethanolamine

C12178

histidinal

C13284

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

C13964

N-dimethylethanolamine phosphate

C11479

phosphoenolpyruvate

C6605

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C1586

1,2-dichloroethane

C11715

quinolinate

C13950

pimeloyl-CoA

C1431

3-dehydroshikimate

C12218

α-D-glucosamine 1-phosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C11874

N-succinyl-2-amino-6-ketopimelate

C13723

arsenite

C6585

N-carbamoyl-2-oxoglycine

C11857

β-nicotinate D-ribonucleotide

C2191

carbamoyl phosphate

C12176

histidinol

C13546

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

C13945

N-monomethylethanolamine

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C13854

hydrogen selenide

C7865

urea

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C13824

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

C11836

hydroxypyruvate

C13939

9-mercaptodethiobiotin

C13913

N-carbamoylputrescine

C11604

thiamine diphosphate

C11652

shikimate 3-phosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C1407

3-hydroxypropanoate

C15181

(S)-5-amino-3-oxohexanoate

C11634

tartronate semialdehyde

C6361

acetoacetate

C1002

anthranilate

C1533

2-chloroethanol

C11493

2-phosphoglycolate

C1130

8-amino-7-oxononanoate

C11946

N-(5-phosphoribosyl)-anthranilate

C9422

nicotinate adenine dinucleotide

C623

(3S,5S)-3,5-diaminohexanoate

C11760

prephenate

C11772

O-phosphoethanolamine

C11838

2-succinylbenzoate

C1231

5-aminolevulinate

C11483

glycolate

C15341

N-tetradecanoylglycyl-peptide

C11748

pseudouridine 5'-phosphate

C11800

(R)-pantothenate

C352

2-iminoacetate

C11639

succinate semialdehyde

C12164

H2

C891

citrate

C3264

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

C10349

glycerone phosphate

C4674

glutathione disulfide

C6444

oxaloacetate

C13985

(R)-5-phosphomevalonate

C1010

ammonia

C12162

hydrogen peroxide

C12096

isochorismate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C12054

L-dehydro-ascorbate

C11767

porphobilinogen

C1538

2-C-methyl-D-erythritol 4-phosphate

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C12394

6-phospho D-glucono-1,5-lactone

C1325

4-amino-4-deoxychorismate

C933

L-canavanine

C11543

H2O

C11773

phosphocholine

C1519

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

C12350

7,8-diaminopelargonate

C11824

oxamate

C1184

5-phospho-β-D-ribosylamine

C13630

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

C12139

preuroporphyrinogen

C939

butanoyl phosphate

C15331

glycyl-peptide

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C14218

L-β-lysine

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C12352

(S)-dihydroorotate

C3417

(S)-3-methyl-2-oxopentanoate

C12848

N5-carboxyaminoimidazole ribonucleotide

C1321

4-aminobutanoate

C9454

adenine

C9455

guanine

C7809

AMP

C7811

XMP

C7741

IMP

C7827

GMP

C7745

GTP

C7844

ATP

C7795

GDP

C7757

ADP

C7751

dGTP

C7783

dATP

C7840

dGMP

C7807

dGDP

C7823

dADP

C7785

hypoxanthine

C15088

adenosine

C15094

xanthosine

C15085

guanosine

C15091

inosine

C10050

FADH2

C10053

FAD

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C12664

7,8-dihydroneopterin

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12708

7,8-dihydroneopterin 3'-phosphate

C10609

7,8-dihydropteroate

C10597

7,8-dihydrofolate monoglutamate

C7129

5,6,7,8-tetrahydrofolate

C7134

tetrahydropteroyl tri-L-glutamate

C15287

tetrahydrofolate-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8772

dCTP

C8760

UTP

C8744

dTMP

C8752

dUDP

C8707

cytosine

C8764

dTTP

C8732

CDP

C13346

CDP-choline

C11481

orotate

C8724

dUTP

C8714

UDP

C8739

uracil

C8761

CTP

C8733

dCDP

C10287

CDP-ethanolamine

C8720

dTDP

C8770

dUMP

C7444

UDP-N-acetyl-α-D-glucosamine

C2241

UMP

C2245

CMP

C2706

uridine

C2702

cytidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C2519

thymidine

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C4985

(S)-1-pyrroline-5-carboxylate

C9077

(2E,6E)-farnesyl diphosphate

C11281

2-chloroacetate

C4678

glutathione

C4580

(R)-S-lactoylglutathione

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C4927

(E)-glutaconyl-CoA

C4901

succinyl-CoA

C4924

glutaryl-CoA

C4984

vinylacetyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5298

acetyl-CoA

C5316

(R)-2-hydroxyglutaryl-CoA

C4913

malonyl-CoA

C4937

3'-dephospho-CoA

C5302

4-hydroxybutanoyl-CoA

C5296

acryloyl-CoA

C2242

(S)-3-aminobutanoyl-CoA

C4920

isovaleryl-CoA

C5309

3-hydroxypropanoyl-CoA

C4922

isobutanoyl-CoA

C7343

(S)-malyl-CoA

C5890

myristoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C14677

octanoyl-CoA

C2008

acetoacetyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C1337

crotonyl-CoA

C10076

L-galactono-1,4-lactone

C12545

ethene

C6277

2-methoxy-6-(all-trans-octaprenyl)phenol

C7666

protoporphyrinogen IX

C7658

uroporphyrinogen-III

C7676

protoporphyrin IX

C6624

protoheme

C5468

ubiquinone-8

C6090

methylglyoxal

C2858

glycolaldehyde

C2109

α-D-galactopyranose

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C5987

β-L-galactopyranose

C3483

formaldehyde

C3500

acetaldehyde

C3529

1-octanal

C8321

geranyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C4553

3-octaprenyl-4-hydroxybenzoate

C6287

2-octaprenylphenol

C6596

2-iminosuccinate

C10614

coenzyme A

C12247

L-homocysteine

C6043

4-methylphenol

C5607

L-glutamate

C5605

L-histidine

C5642

L-arginine

C5584

L-lysine

C5579

L-serine

C5596

L-aspartate

C12067

glycine

C5577

L-threonine

C5573

L-tyrosine

C5609

L-glutamine

C5612

L-cysteine

C2469

L-phenylalanine

C5575

L-tryptophan

C5588

L-leucine

C5597

L-alanine

C5581

L-proline

C11441

β-alanine

C12073

L-aspartyl-4-phosphate

C15000

N-acetyl-L-ornithine

C14973

N-acetyl-L-glutamate

C5462

N-formyl-L-methionine

C13322

N-carbamoyl-L-aspartate

C6532

(2S, 3S)-3-methylaspartate

C12303

L-citrulline

C5603

L-isoleucine

C12245

L-homoserine

C12227

O-succinyl-L-homoserine

C12237

L-canaline

C12231

L-ornithine

C12203

S-adenosyl-L-homocysteine

C12263

1-aminocyclopropane-1-carboxylate

C15292

S-adenosyl-L-methionine

C12233

L-glutamate-5-semialdehyde

C12239

L-aspartate 4-semialdehyde

C12229

O-phospho-L-homoserine

C5585

meso-diaminopimelate

C5583

L-methionine

C5595

L-cystathionine

C5580

L,L-diaminopimelate

C8419

sn-glycerol 3-phosphate

C10288

adenylo-succinate

C7643

cyclic-GMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5552

5'-deoxyadenosine

C7652

cyclic-AMP

C987

GDP-β-L-galactose

C1009

GDP-α-D-mannose

C1043

GDP-4-dehydro-α-D-rhamnose

C1025

GDP-β-L-gulose

C979

GDP-α-D-rhamnose

C10263

ADP-α-D-glucose

C9884

ADP-D-ribose

C14500

NADH

C14497

NADPH

C4018

NADP+

C4020

NAD+

C4243

β-nicotinamide D-ribonucleotide

C15604

(E)-4-hydroxy-3-methylbut 2-en-1-yl diphosphate

C15606

(+)-ureidoglycolate

C10994

thiamine

C10986

L-ascorbate

C10982

nicotinate

C10996

nicotinamide

C10992

biotin

C4210

pyridoxal 5'-phosphate

C4216

pyridoxamine

C4208

pyridoxine

C4188

pyridoxamine 5'-phosphate

C4200

pyridoxal

C4214

pyridoxine 5'-phosphate

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6293

3-(all-trans-octaprenyl)benzene-1,2-diol

C11485

D-gluconate

C10693

sucrose

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C973

D-ribulose-1,5-bisphosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C8821

β-L-galactose 1-phosphate

C8815

α-D-galactose 1-phosphate

C8813

α-D-mannose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2057

α-D-ribose-1-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C3731

glycerol

C8835

β-D-fructofuranose

C13570

N-acetyl-β-D-mannosamine

C13422

hydrogen cyanide

C7685

allantoate

C8014

phosphoribulosylformimino-AICAR-phosphate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C9539

(S)-(+)-allantoin

C2179

choline

C10301

agmatine

C3576

cadaverine

C3574

spermidine

C3564

spermine

C3548

putrescine

C3572

aminopropylcadaverine

C1328

L-cysteinylglycine

C8518

γ-L-glutamyl-L-cysteine

C6757

(S)-citramalate

C8950

chorismate

C6442

succinate

C6443

fumarate

C2802

(S)-malate

C3409

octanoate

C3418

butanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C3345

3-phenyl-2-oxopropanoate

C11517

acetate

C8534

cis-aconitate

C8544

cis-2-methylaconitate

C13463

(2R,3S)-2-methylisocitrate

C8542

(2S,3S)-2-methylcitrate

C8531

D-threo-isocitrate

C11409

2,3-dihydroxybenzoate

C8974

4-aminobenzoate

C951

4-hydroxybutanoate

C11476

(R)-glycerate

C8186

(R)-2-hydroxyglutarate

C6186

(S)-lactate

C6185

(R)-lactate

C3308

pyruvate

C3420

propanoate

C3421

formate

C3086

4-(methylsulfanyl)-2-oxobutanoate

C3351

glyoxylate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C6617

N-acetyl-D-mannosamine 6-phosphate

C7036

hydrogencarbonate

C8958

superoxide

C7006

chloride

C6097

phosphate

C6093

diphosphate

C6094

triphosphate

C4328

ammonium

C4320

H+

C11023

Fe2+

C11019

Ca2+

C1680

menaquinol-8

C1867

3-demethylubiquinol-8

C5543

ubiquinol-8

C1863

demethylmenaquinol-8

C2258

phlorisovalerophenone

C2257

phlorisobutanophenone

C2727

enterobactin

C2269

deoxyhumulone

C2261

4-prenylphlorisovalerophenone

C2266

deoxycohumulone

C9488

cohumulone

C9490

humulone

C3093

urate

C6934

4-hydroxybenzoate

C2879

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

C9501

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C6601

(S)-ureidoglycine

C8962

nitric oxide

C10527

myo-inositol

C6488

phytate

C3456

D-myo-inositol (3,4)-bisphosphate

C3467

D-myo-inositol (3,4,6)-trisphosphate

C5410

D-myo-inositol (3,4,5,6)-tetrakisphosphate

C6473

D-myo-inositol 1,3,4,5,6-pentakisphosphate

C13573

1D-myo-inositol 3-monophosphate

C5871

1-octanol

C3450

ethanol

C7121

oxygen