an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
L-dehydro-ascorbate
L-xylo-hex-3-ulono-1,4-lactone
L-gulono-1,4-lactone
α-D-galacturonate 1-phosphate
N5-carboxyaminoimidazole ribonucleotide
propanoyl phosphate
anthranilate
N-(5-phosphoribosyl)-anthranilate
S-ribosyl-L-homocysteine
autoinducer 2
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
1-(methylsulfanyl)xylulose 5-phosphate
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
4-amino-2-methyl-5-pyrimidinemethanol
quinolinate
dialurate
formamide
3,5-dihydro-4H-imidazol-4-one
4-aminoimidazole
5-aminoimidazole-4-carboxylate
5-ureidoimidazole-4-carboxylate
ammonia
4-imidazolone-5-propanoate
2-C-methyl-D-erythritol 4-phosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
5-deoxy-α-ribose 1-phosphate
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-ribulose 1-phosphate
(R)-1-amino-2-propanol O-2-phosphate
α-ribazole
thiamine phosphate
thiamine diphosphate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
(R)-4'-phosphopantothenoyl-L-cysteine
4'-phosphopantetheine
prenyl diphosphate
isopentenyl diphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
nicotinate adenine dinucleotide
γ-L-glutamyl 5-phosphate
prephenate
D-glycero-β-D-manno-heptose 1,7-bisphosphate
D-glycero-β-D-manno-heptose 1-phosphate
ADP-D-glycero-β-D-manno-heptose
ADP-L-glycero-β-D-manno-heptose
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
selenophosphate
O-ureido-L-homoserine
L-arginino-succinate
canavaninosuccinate
L-canavanine
α-D-glucosamine 1-phosphate
isochorismate
2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
1,4-dihydroxy-2-naphthoyl-CoA
2-succinylbenzoate
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
carbon monoxide
pimelate
pimeloyl-CoA
orotidine 5'-phosphate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
porphobilinogen
preuroporphyrinogen
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
5,6-dimethylbenzimidazole
β-nicotinate D-ribonucleotide
α-ribazole 5'-phosphate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate
(R)-4'-phosphopantothenate
dihydroxyacetone
lipid X
lipid A disaccharide (E. coli)
lipid IVA
3-deoxy-α-D-manno-2-octulosonate
3-deoxy-D-manno-octulosonate 8-phosphate
urocanate
(L-threonylcarbamoyl)adenylate
DNA without lesion
4-pyridoxolactone
hydrogenobyrinate
hydrogenobyrinate a,c-diamide
glycerone phosphate
α-D-galactosyl-diphosphoundecaprenol
(S)-dihydroorotate
carbamoyl phosphate
H2
coproporphyrinogen III
acetyl phosphate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
2-dehydropantoate
histidinal
histidinol
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
L-histidinol phosphate
hydrogen selenide
O-acetyl-L-serine
shikimate
3-dehydroshikimate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
3-dehydroquinate
3-deoxy-D-arabino-heptulosonate 7-phosphate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
(S)-2-acetolactate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-2-aceto-2-hydroxybutanoate
4-amino-4-deoxychorismate
(S)-2,3,4,5-tetrahydrodipicolinate
dethiobiotin
(S)-2-amino-6-oxohexanoate
8-amino-7-oxononanoate
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
7,8-diaminopelargonate
3-ureidopropanoate
hydroxylamine
hydrogen peroxide
(2S)-2-isopropylmalate
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
1,4-dihydroxy-2-naphthoate
xanthine
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
CO2
4-aminobutanoate
(R)-pantothenate
H2O
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
phosphoenolpyruvate
oxaloacetate
citrate
S-adenosyl 3-(methylsulfanyl)propylamine
S-methyl-5'-thioadenosine
2-carboxy-L-threo-pentonate
2-carboxy-L-xylonolactone
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2,3-dioxo-L-gulonate
cyclic- 3,4-O-oxalyl-L-threonate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
dehydroascorbate (bicyclic form)
cyclic-2,3-O-oxalyl-L-threonate
pyruvic oxime
4-oxoglutaramate
1-piperideine 6-carboxylate
urea
(2E,6E)-farnesyl diphosphate
preQ0
coenzyme A
guanylyl molybdenum cofactor
MoO2-molybdopterin cofactor
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
5-methyltetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
FAD
FMNH2
FMN
(S)-NADHX
(R)-NADHX
demethylmenaquinol-8
ubiquinol-8
menaquinol-8
3-demethylubiquinol-8
NAD+
NADP+
NADH
NADPH
glycine betaine
L-ascorbate
thiamine
riboflavin
nicotinate
pyridoxal
trimethyl sulfonium
selenide
thiosulfate
nitrite
nitrate
hydrogencarbonate
molybdate
superoxide
phosphate
triphosphate
diphosphate
Fe2+
Co2+
ammonium
H+
dimethyl sulfide
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
methanethiol
2-iminopropanoate
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
putrescine
spermidine
propan-1-ol
ethanol
ethylene glycol
(S)-propane-1,2-diol
(R)-propane-1,2-diol
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
phosphoribulosylformimino-AICAR-phosphate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
L-α-amino-ε-keto-pimelate
L-cysteine
L-tyrosine
L-asparagine
L-serine
L-threonine
L-glutamine
glycine
L-aspartate
L-glutamate
L-histidine
L-arginine
L-lysine
L-tryptophan
D-methionine
D-aspartate
D-alanine
D-glutamate
L-aspartyl-4-phosphate
L-threonine 3-O-phosphate
N-formimino-glycine
N-carbamoyl-L-aspartate
N-carbamoylglycine
formyl-L-isoglutamine
N-formimino-L-glutamate
N-acetyl-L-ornithine
N-acetyl-L-glutamate
O-acetyl-L-homoserine
L-leucine
L-isoleucine
L-proline
L-methionine
L-valine
L-selenocysteine
L-alanine
L-ornithine
L-cystathionine
L,L-diaminopimelate
L-isoglutamine
L-citrulline
L-aspartate 4-semialdehyde
L-glutamate-5-semialdehyde
L-canaline
L-homoserine
O-succinyl-L-homoserine
O-phospho-L-homoserine
S-sulfo-L-cysteine
L-homocysteine
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
meso-diaminopimelate
β-alanine
(R)-3-amino-2-methylpropanoate
4-aminobenzoate
butanoate
acetate
D-gluconate
orotate
(R)-pantoate
aldehydo-D-glucuronate
aldehydo-D-galacturonate
(S)-1-pyrroline-5-carboxylate
chorismate
(4S)-4-hydroxy-2-oxoglutarate
succinate
fumarate
(S)-malate
3-(carbamoylamino)-2-methylpropanoate
(R)-lactate
(S)-lactate
pyruvate
formate
propanoate
glyoxylate
2-oxoglutarate
2-oxobutanoate
diacetyl
glycolaldehyde
α-D-galactopyranose
β-D-glucopyranose
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
acetaldehyde
1-propanal
(S)-lactaldehyde
(R)-lactaldehyde
a thiol group
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
CMP-3-deoxy-β-D-manno-octulosonate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
dTDP-α-D-glucose
UDP-α-D-galacturonate
UDP-N-acetyl-α-D-mannosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-galactofuranose
UDP-α-D-galactose
UDP-α-D-glucose
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
sucrose 6F-phosphate
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
β-D-fructose 1,6-bisphosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-ribulose 5-phosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-fructofuranose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-mannosamine
N-acetyl-β-D-glucosamine
sucrose
α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
heptosyl-Kdo2-lipid A
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
heptosyl-Kdo2-lipid IVA
L-gulonate
aldehydo-L-galactonate
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
2-methylacetoacetyl-CoA
(E)-glutaconyl-CoA
succinyl-CoA
3'-dephospho-CoA
acetyl-CoA
2-methylbutanoyl-CoA
(E)-2-methylcrotonoyl-CoA
(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA
crotonyl-CoA
oleoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(S)-3-hydroxybutanoyl-CoA
butanoyl-CoA
propanoyl-CoA
(S)-methylmalonyl-CoA
(R)-methylmalonyl-CoA
L-galactono-1,4-lactone
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
dioleoyl phosphatidate
1-oleoyl-2-lyso-glycerone phosphate
1-oleoyl-sn-glycerol 3-phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-octaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
8-hydroxypurine
6,8-dihydroxypurine
urate
4-vinylguaiacol
ferulate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
6,7-dimethyl-8-(1-D-ribityl)lumazine
7,8-dihydroneopterin 3'-phosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropteroate
adenine
guanine
2'-deoxyadenosine
2'-deoxyguanosine
guanosine
xanthosine
adenosine
purine
hypoxanthine
dIMP
dAMP
dGMP
dITP
dGTP
dATP
dGDP
dADP
XTP
ITP
GTP
ATP
GDP
ADP
AMP
XMP
GMP
IMP
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
dCTP
dTDP
dTTP
dCMP
uracil
uridine 3'-monophosphate
cytidine-3'-monophosphate
dUDP
UDP
dCDP
CDP
UTP
CTP
dUTP
5,6-dihydrothymine
5,6-dihydrouracil
dUMP
dTMP
cytidine
uridine
thymidine
2'-deoxycytidine
2'-deoxyuridine
thymine
CMP
UMP
preQ1
adenosylcobalamin
cob(I)alamin
sirohydrochlorin
cobyrinate
cobalt-precorrin-3
cobalt-precorrin-7
cobalt-precorrin-8
cobalt-precorrin-6B
cobalt-precorrin-5B
cobalt-precorrin-6A
cobalt-precorrin-4
cobalt-precorrin-5A
precorrin-1
precorrin-2
precorrin-3A
precorrin-6A
precorrin-3B
precorrin-4
precorrin-5
precorrin-7
precorrin-8x
precorrin-6B
hydantoin
guanosine 2',3'-cyclic monophosphate
adenosine 2',3'-cyclic monophosphate
adenosine 3'-monophosphate
guanosine 3'-monophosphate
5'-deoxyadenosine
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
adenylo-succinate
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-iminosuccinate
2-iminobutanoate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
DNA with lesion
cobalt-factor III
cobalt-sirohydrochlorin
adenosyl-cobinamide phosphate
adenosylcobyrate
adenosylcobinamide-GDP
adenosylcobalamin 5'-phosphate
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cob(I)yrinate a,c-diamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)inamide
adenosylcobinamide
protoheme
N2
uroporphyrinogen-I
coproporphyrinogen I
uroporphyrinogen-III
protoporphyrin IX
protoporphyrinogen IX
siroheme
hydrogen sulfide
oxygen
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
(2R)-2,3-dihydroxy-3-methylbutanoate
monodehydroascorbate radical
5,10-methenyltetrahydrofolate mono-L-glutamate