an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
dialurate
(R)-1-amino-2-propanol O-2-phosphate
5-amino-6-(D-ribitylamino)uracil
propanoyl phosphate
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
2-phosphoglycolate
7-carboxy-7-deazaguanine
L-canavanine
(S)-dihydroorotate
quinolinate
histidinal
S-Inosyl-L-homocysteine
anthranilate
N-(5-phosphoribosyl)-anthranilate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
5-phospho-α-D-ribose 1,2-cyclic phosphate
preuroporphyrinogen
carbon monoxide
ammonia
enol-phenylpyruvate
ethanolamine
(S)-2-acetolactate
α-D-glucosamine 1-phosphate
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
norspermidine
(S)-2-amino-6-oxohexanoate
3-oxopropanoate
S-methyl-5-thio-α-D-ribose 1-phosphate
D-erythro-imidazole-glycerol-phosphate
4-amino-4-deoxychorismate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
orotidine 5'-phosphate
2-dehydropantoate
hydrogenobyrinate
hydrogenobyrinate a,c-diamide
(R)-4'-phosphopantothenoyl-L-cysteine
coproporphyrinogen III
O-acetyl-L-serine
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
carbonic acid
pimeloyl-CoA
xanthine
carboxynorspermidine
2-keto-D-gluconate
2,5-didehydro-D-gluconate
3-deoxy-D-arabino-heptulosonate 7-phosphate
2-C-methyl-D-erythritol 4-phosphate
(lipoyl)adenylate
histidinol
L-arginino-succinate
canavaninosuccinate
5,6-dimethylbenzimidazole
H2
O-ureido-L-homoserine
acetyl phosphate
5-dehydro-4-deoxy-D-glucarate
β-nicotinate D-ribonucleotide
(indol-3-yl)pyruvate
(indol-3 yl)acetyl-CoA
4-prenylphlorisobutyrophenone
selenophosphate
oxaloacetate
3-dehydroquinate
(S)-mandelate
(R)-mandelate
urea
2-iminoacetate
(R)-2,3-dihydroxy-3-methylpentanoate
coenzyme B
CoB-CoM heterodisulfide
dihydromethanophenazine
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
porphobilinogen
thiamine phosphate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
α-ribazole 5'-phosphate
1,2-dihydro-β-NADP
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropyl-3-oxosuccinate
3-ethylmalate
2-oxovalerate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
isopentenyl diphosphate
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
(4S)-4-hydroxy-2-oxoheptanedioate
succinate semialdehyde
3-deoxy-α-D-manno-2-octulosonate
glycolate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
selenodiglutathione
phosphoenolpyruvate
hydroxypyruvate
hydrogen peroxide
imidazole acetol-phosphate
L-histidinol phosphate
DNA without lesion
1-piperideine 6-carboxylate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
carbamoyl phosphate
carboxyphosphate
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
oxalosuccinate
nicotinate adenine dinucleotide
CO2
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
glycerone phosphate
(R)-pantothenate
(R)-4'-phosphopantothenate
adenosine 5'-phosphoselenate
adenosine 5'-phosphosulfate
4-methyl-2-oxopentanoate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine diphosphate
(S)-2-aceto-2-hydroxybutanoate
2,5-dioxopentanoate
glutathione disulfide
prenyl diphosphate
hydrogen selenide
prephenate
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
8-amino-7-oxononanoate
α-D-ribose-1-methylphosphonate 5-phosphate
5-(methylsulfanyl)-ribulose 1-phosphate
γ-L-glutamyl 5-phosphate
shikimate
β-D-ribosylnicotinate
4'-phosphopantetheine
3-dehydroshikimate
α-ribazole
methanophenazine
H2O
3-deoxy-D-manno-octulosonate 8-phosphate
1-deoxy-L-glycero-tetrulose 4-phosphate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
glutathioselenol
DNA with lesion
4-methylphenol
L-homocysteine
phenylacetate
hydrogen cyanide
adenosylcobalamin
cob(I)alamin
adenosyl-cobinamide phosphate
cob(I)yrinate a,c-diamide
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobyrate
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
cobalt-precorrin-5A
cobalt-sirohydrochlorin
adenosylcobinamide-GDP
adenosylcobalamin 5'-phosphate
cobalt-precorrin-2
cobalt-precorrin-4
Mg-protoporphyrin
protoheme
uroporphyrinogen-I
protoporphyrinogen IX
protoporphyrin IX
uroporphyrinogen-III
siroheme
oxygen
hydrogen sulfide
2-iminosuccinate
2-iminopropanoate
2-iminobutanoate
2-chloroacetate
sn-glycerol 3-phosphate
sn-glycerol 1-phosphate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2R)-2,3-dihydroxy-3-methylbutanoate
(S)-methylmalonate-semialdehyde
(S)-4-hydroxymandelate
(R)-4-hydroxymandelate
2-octaprenylphenol
preQ0
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
Fe3+
H+
ammonium
Fe2+
Mo2+
Co2+
Ni2+
Mg2+
sulfate
hydrogensulfite
nitrate
thiosulfate
molybdate
selenide
sulfite
selenite
selenate
OH-
superoxide
hydrogencarbonate
phosphonate
phosphate
diphosphate
triphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
pristanate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
agmatine
N1-acetylspermidine
N-acetylputrescine
N1-acetylspermine
spermidine
spermine
putrescine
S-(hydroxymethyl)glutathione
glutathione
thiocyanate
methanethiol
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
L-cysteate
3-sulfopyruvate
coenzyme M
dodecyl sulfate
succinyl-CoA
3'-dephospho-CoA
linoleoyl-CoA
α-linolenoyl-CoA
isobutanoyl-CoA
malonyl-CoA
(R)-2-hydroxyglutaryl-CoA
(E)-glutaconyl-CoA
phenylacetyl-CoA
acetyl-CoA
phytenoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
oleoyl-CoA
7-hydroxylauroyl-CoA
16-hydroxypalmitoyl-CoA
18-hydroxyoleoyl-CoA
18-hydroxystearoyl-CoA
(Z)-15-tetracosenoyl-CoA
propanoyl-CoA
lauroyl-CoA
octanoyl-CoA
decanoyl-CoA
palmitoyl-CoA
stearoyl-CoA
pristanoyl-CoA
methane
nicotinate
riboflavin
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxal
pyridoxal 5'-phosphate
pyridoxine
pyridoxine 5'-phosphate
pyridoxamine 5'-phosphate
pyridoxamine
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADH
NADPH
NAD+
NADP+
guanosine 2',3'-cyclic monophosphate
adenosine 2',3'-cyclic monophosphate
pppGpp
ppGpp
adenosine 3'-monophosphate
guanosine 3'-monophosphate
dGTP
dATP
IDP
isoguanine
8-oxo-dGTP
8-oxo-GTP
adenylo-succinate
GTP
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
IMP
dADP
dGDP
GDP
GMP
AMP
ATP
5'-deoxyadenosine
ADP
dIDP
hypoxanthine
XMP
ITP
dITP
guanosine
inosine
adenosine
xanthosine
uridine
cytidine
2'-deoxyuridine
2'-deoxycytidine
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CMP
5-hydroxy-CTP
dTTP
dCTP
dUTP
UTP
CTP
dTMP
dUMP
dCMP
UMP
CMP
dUDP
dCDP
dTDP
CDP
UDP
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
uridine 3'-monophosphate
cytidine-3'-monophosphate
GDP-α-D-mannuronate
GDP-α-D-mannose
preQ1
uracil
adenine
guanine
CMP-3-deoxy-β-D-manno-octulosonate
UDP-α-D-glucose
CDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-α-D-glucuronate
UDP-α-D-galactofuranose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
CDP-4-dehydro-6-deoxy-α-D-glucose
(R)-lipoate
coenzyme A
(S)-1-pyrroline-5-carboxylate
precorrin-4
precorrin-5
precorrin-8x
precorrin-3A
precorrin-1
precorrin-2
sirohydrochlorin
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
6-(hydroxymethyl)-7,8-dihydropterin
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
6-carboxy-5,6,7,8-tetrahydropterin
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
orotate
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
protocatechuate
6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol
all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol
4-aminobenzoate
methanol
ethanol
1-dodecanol
glycerol
1-(β-D ribofuranosyl)nicotinamide
N-acetyl-α-D-glucosamine 1-phosphate
D-glyceraldehyde
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-arabinofuranose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
5-amino-4-imidazolecarboxyamide
phosphoribulosylformimino-AICAR-phosphate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
carbamate
L-serine
L-cysteine
L-tyrosine
L-threonine
L-glutamine
L-asparagine
glycine
L-arginine
L-histidine
L-lysine
L-aspartate
L-glutamate
L-methionine
L-phenylalanine
L-alanine
L-proline
L-tryptophan
L-valine
L-isoleucine
L-leucine
β-alanine
D-glutamate
D-alanine
L-cystathionine
L,L-diaminopimelate
L-aspartyl-4-phosphate
L-ornithine
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
L-saccharopine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
O-succinyl-L-homoserine
L-canaline
O-phospho-L-homoserine
L-homoserine
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
L-glutamate-5-semialdehyde
meso-diaminopimelate
chorismate
succinate
fumarate
(S)-malate
α,ω-9Z-octadecenedioate
D-galactarate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
3-oxoadipate
3-phenyl-2-oxopropanoate
pyruvate
2-oxobutanoate
2-oxoglutarate
glyoxylate
acetate
formate
propanoate
decanoate
7-hydroxylaurate
laurate
octanoate
4-hydroxybutanoate
18-hydroxystearate
16-hydroxypalmitate
18-hydroxyoleate
(15Z)-tetracosenoate
linoleate
palmitate
oleate
α-linolenate
stearate
phytenate
(R)-pantoate
D-alanyl-D-alanine
phlorisovalerophenone
deoxyhumulone
deoxycohumulone
4-prenylphlorisovalerophenone
geranyl diphosphate
trans,octacis-decaprenyl phosphate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
all-trans-octaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
diacetyl
formaldehyde
acetaldehyde