an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
quinolinate
3-dehydroshikimate
3-dehydroquinate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
urea
(R)-4'-phosphopantothenate
(R)-pantothenate
acetoacetate
dialurate
(R)-1-amino-2-propanol O-2-phosphate
thiamine diphosphate
hydrogen peroxide
4-phosphooxy-L-threonine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
ManNAc-GlcNAc-PP-undecaprenol
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
hydrogenobyrinate a,c-diamide
hydrogenobyrinate
preuroporphyrinogen
5-aminolevulinate
porphobilinogen
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
acetyl phosphate
propanoyl phosphate
2-keto-D-gluconate
2,5-didehydro-D-gluconate
oxalosuccinate
histidinal
L-canavanine
(2S)-2-isopropyl-3-oxosuccinate
3-ethylmalate
2-oxovalerate
D-erythro-imidazole-glycerol-phosphate
autoinducer 2
α-ribazole
5,6-dimethylbenzimidazole
α-ribazole 5'-phosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
(R)-4'-phosphopantothenoyl-L-cysteine
4'-phosphopantetheine
crotonate
S-ribosyl-L-homocysteine
citrate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
(S)-3-methyl-2-oxopentanoate
4-methyl-2-oxopentanoate
3-oxopropanoate
4-aminobutanoate
CDP-glycerol
3-deoxy-α-D-manno-2-octulosonate
(S)-4-hydroxy-2-oxopentanoate
(R)-2,3-dihydroxy-3-methylpentanoate
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
(2S)-2-isopropylmalate
histidinol
3-deoxy-D-arabino-heptulosonate 7-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
prephenate
O-acetyl-L-serine
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
γ-L-glutamyl 5-phosphate
oxaloacetate
3-ureidopropanoate
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
5-oxo-L-proline
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-phosphoglycolate
(S)-dihydroorotate
orotidine 5'-phosphate
N5-carboxyaminoimidazole ribonucleotide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
carbon monoxide
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
coproporphyrinogen III
xanthine
urea-1-carboxylate
nicotinate adenine dinucleotide
DNA without lesion
(indol-3-yl)pyruvate
(indol-3 yl)acetyl-CoA
β-nicotinate D-ribonucleotide
β-D-ribosylnicotinate
5-phospho-β-D-ribosylamine
imidazole acetol-phosphate
L-histidinol phosphate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
glycolate
2-C-methyl-D-erythritol 4-phosphate
isopentenyl diphosphate
prenyl diphosphate
α-D-glucosamine 1-phosphate
O-ureido-L-homoserine
canavaninosuccinate
L-arginino-succinate
N-acetylglutamyl-phosphate
N-acetyl-L-glutamate 5-semialdehyde
anthranilate
N-(5-phosphoribosyl)-anthranilate
glycerone phosphate
2-dehydropantoate
2-dehydro-3-deoxy-D-gluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
salicyl alcohol
(S)-mandelate
(R)-mandelate
(4S)-4-hydroxy-2-oxoheptanedioate
succinate semialdehyde
3-phosphooxypyruvate
shikimate
shikimate 3-phosphate
phosphoenolpyruvate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
hydroxypyruvate
aminoacetone
H2O
carbamoyl phosphate
carboxyphosphate
butanoyl phosphate
3-methyl-2-oxobutanoate
CO2
DNA with lesion
L-homocysteine
phenylacetate
phosphonoacetaldehyde
(2-aminoethyl)phosphonate
adenosylcobalamin
cob(I)alamin
adenosyl-cobinamide phosphate
cobalt-precorrin-5B
cobalt-precorrin-6A
cobalt-precorrin-4
cobalt-precorrin-5A
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
adenosylcobyrate
cobalt-sirohydrochlorin
cobalt-precorrin-2
adenosylcobinamide-GDP
adenosylcobalamin 5'-phosphate
cob(I)yrinate a,c-diamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)inamide
adenosylcobinamide
Mg-protoporphyrin
protoheme
uroporphyrinogen-I
uroporphyrinogen-III
protoporphyrinogen IX
protoporphyrin IX
siroheme
oxygen
hydrogen sulfide
2-iminosuccinate
2-iminobutanoate
2-iminopropanoate
2-chloroacetate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
(R)-glycerate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2R)-2,3-dihydroxy-3-methylbutanoate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
(S)-4-hydroxymandelate
(R)-4-hydroxymandelate
preQ0
N-acetyl-β-neuraminate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
Fe3+
H+
K+
ammonium
Co2+
Fe2+
Mg2+
Cd2+
Ni2+
sulfate
hydrogencarbonate
nitrate
phosphonate
phosphate
triphosphate
diphosphate
chloride
(2E,6E)-farnesyl diphosphate
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
N1-acetylspermidine
N-acetylputrescine
N1-acetylspermine
spermidine
putrescine
spermine
glutathione
methanethiol
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
taurine
(R)-S-lactoylglutathione
3'-dephospho-CoA
(R)-2-hydroxyglutaryl-CoA
(E)-glutaconyl-CoA
succinyl-CoA
phenylacetyl-CoA
malonyl-CoA
acetyl-CoA
isobutanoyl-CoA
crotonyl-CoA
oleoyl-CoA
18-hydroxylinoleoyl-CoA
propanoyl-CoA
butanoyl-CoA
cis-vaccenoyl-CoA
palmitoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
acetoacetyl-CoA
nicotinate
riboflavin
thiamine
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxamine
pyridoxamine 5'-phosphate
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADPH
NADH
NADP+
NAD+
dGDP
dADP
1-(5-phospho-β-D-ribosyl)-AMP
1-(5-phospho-β-D-ribosyl)-ATP
ppGpp
pppGpp
dATP
cyclic-AMP
5'-deoxyadenosine
2'-deoxyadenosine
2'-deoxyinosine
hypoxanthine
XMP
IMP
adenylo-succinate
dGTP
2'-deoxyguanosine
GMP
GTP
GDP
AMP
ATP
ADP
xanthosine
guanosine
inosine
adenosine
uridine
cytidine
thymidine
2'-deoxycytidine
2'-deoxyuridine
cyclic di-3',5'-guanylate
dUTP
dCTP
dTTP
UTP
CTP
dTMP
dUMP
dCMP
CMP
UMP
dTDP
dCDP
CDP
UDP
β-nicotinamide D-ribonucleotide
ADP-α-D-glucose
preQ1
thymine
uracil
guanine
adenine
5,6-dihydrouracil
5,6-dihydrothymine
CMP-3-deoxy-β-D-manno-octulosonate
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-mannosamine
UDP-α-D-glucuronate
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
coenzyme A
(S)-1-pyrroline-5-carboxylate
precorrin-3A
precorrin-3B
precorrin-4
precorrin-6B
precorrin-6A
precorrin-8x
precorrin-2
precorrin-1
sirohydrochlorin
hydantoin
reduced riboflavin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
orotate
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
hydroquinone
protocatechuate
diacetyl
methylglyoxal
butan-1-al
acetaldehyde
(S)-lactaldehyde
D-glyceraldehyde
α-D-glucopyranose
β-D-glucopyranose
β-D-galactopyranose
α-D-galactopyranose
butan-1-ol
methanol
glycerol
D-sorbitol
L-iditol
galactitol 1-phosphate
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
aldehydo-D-galacturonate
maltotriose
maltotetraose
maltopentaose
maltoheptaose
maltohexaose
4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate
4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate
sucrose
keto-D-fructose
keto-L-sorbose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
D-xylulose
β-D-fructofuranose
4-deoxy-L-threo-hex-4-enopyranuronate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
β-D-fructose 1,6-bisphosphate
salicin 6-phosphate
arbutin-6-phosphate
D-tagatofuranose 6-phosphate
D-fructose 6-phosphate
keto-L-tagatose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
L-rhamnulose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
methyl β-D-glucoside 6-phosphate
D-altronate
D-mannonate
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
geranyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
all-trans-heptaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
6-aminopenicillanate
isopenicillin N
penicillin G
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
phosphoribulosylformimino-AICAR-phosphate
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
chorismate
succinate
L-aspartate
fumarate
(S)-malate
3-(carbamoylamino)-2-methylpropanoate
3-carboxy-cis,cis-muconate
cis-aconitate
D-threo-isocitrate
3-oxoadipate
3-phenyl-2-oxopropanoate
pyruvate
2-oxobutanoate
2-oxoglutarate
acetate
formate
(R)-lactate
butanoate
sophorosyloxydocosanoate
13-sophorosyloxydocosanoate 6',6''-diacetate
13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate
palmitate
(R)-pantoate
D-tagaturonate
L-2-aminoadipate
carbamate
L-serine
L-cysteine
L-tyrosine
L-asparagine
glycine
L-threonine
L-glutamine
L-histidine
L-lysine
L-arginine
L-glutamate
L-methionine
L-leucine
L-proline
L-valine
L-isoleucine
L-alanine
L-tryptophan
L-phenylalanine
β-alanine
(R)-3-amino-2-methylpropanoate
D-glutamate
D-alanine
L-cystathionine
L-aspartyl-4-phosphate
L-ornithine
L,L-diaminopimelate
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
L-2-amino-3-oxobutanoate
3-phospho-L-serine
N-carbamoylglycine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
L-glutamate-5-semialdehyde
O-succinyl-L-homoserine
L-canaline
L-homoserine
L-aspartate 4-semialdehyde
O-phospho-L-homoserine
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine