an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
citrate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
CDP-glycerol
α-D-glucopyranosyl-diphosphoundecaprenol
3-deoxy-D-arabino-heptulosonate 7-phosphate
acetyl phosphate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
carbon monoxide
xanthine
propan-2-ol
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-C-methyl-D-erythritol 4-phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
L-selenocystathionine
orotidine 5'-phosphate
2-phosphoglycolate
coproporphyrinogen III
prenyl diphosphate
isopentenyl diphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
5-enolpyruvoyl-shikimate 3-phosphate
5-phospho-β-D-ribosylamine
S-ribosyl-L-homocysteine
3-dehydroquinate
glycolate
γ-L-glutamyl 5-phosphate
autoinducer 2
(R)-2,3-dihydroxy-3-methylpentanoate
β-D-ribosylnicotinate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
phosphoenolpyruvate
L-tartrate
oxaloacetate
tartronate semialdehyde
5-dehydro-D-gluconate
hydrogen peroxide
CO2
β-nicotinate D-ribonucleotide
quinolinate
S-adenosyl 3-(methylsulfanyl)propylamine
S-methyl-5'-thioadenosine
carbamoyl phosphate
carboxyphosphate
glycerone phosphate
3-dehydroshikimate
H2O
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
ManNAc-GlcNAc-PP-undecaprenol
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
3-amino-1-hydroxyacetone 1-phosphate
2-dehydro-3-deoxy-D-gluconate
glutathione disulfide
acetoacetate
ethanolamine
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
4'-phosphopantetheine
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
prephenate
2-dehydropantoate
selenophosphate
4-aminobutanoate
(S)-dihydroorotate
salicyl alcohol
methylsalicylate
15-cis-4,4'-diapophytoene
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2-dehydro-3-deoxy-D-gluconate 6-phosphate
3-deoxy-D-glycero-2,5-hexodiulosonate
thiamine diphosphate
N-carbamoylputrescine
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
1-piperideine 6-carboxylate
(2S)-2-isopropyl-3-oxosuccinate
3-ethylmalate
2-oxovalerate
3-phosphooxypyruvate
4-phosphooxy-L-threonine
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
H2
shikimate
shikimate 3-phosphate
carboxynorspermidine
norspermidine
(S)-2-amino-6-oxohexanoate
4-guanidinobutyramide
dihydroxyacetone
5-aminopentanoate
dihydrolipoate
oxalosuccinate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
L-histidinol phosphate
imidazole acetol-phosphate
histidinal
histidinol
D-erythro-imidazole-glycerol-phosphate
meso-tartrate
2-hydroxy-3-oxosuccinate
(2S)-2-isopropylmalate
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
O-acetyl-L-serine
nicotinate adenine dinucleotide
DNA without lesion
5-(methylsulfanyl)-ribulose 1-phosphate
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-α-D-ribose
hexulose 6-phosphate
(S)-2,3,4,5-tetrahydrodipicolinate
(S)-3-methyl-2-oxopentanoate
4-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
quercitrin
dIMP
XTP
pppGpp
ppGpp
2'-deoxyadenosine
2'-deoxyinosine
dATP
5'-deoxyadenosine
adenylo-succinate
GDP
hypoxanthine
dGTP
2'-deoxyguanosine
GTP
GMP
IMP
XMP
ITP
AMP
ATP
ADP
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
dITP
1-(5-phospho-β-D-ribosyl)-AMP
isoguanine
8-oxo-dGTP
8-oxo-GTP
dGDP
dADP
1-(5-phospho-β-D-ribosyl)-ATP
ADP-α-D-glucose
uracil
thymine
adenine
guanine
preQ1
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-galactofuranose
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
CMP-N-acetyl-β-neuraminate
2-hydroxy-dATP
5-hydroxy-CTP
CDP
UDP
dCDP
dTDP
dTMP
dUMP
dCMP
UMP
CMP
UTP
CTP
dTTP
dUTP
dCTP
β-nicotinamide D-ribonucleotide
(R)-NADPHX
(S)-NADPHX
NADH
NADPH
NAD+
NADP+
cyclic di-3',5'-guanylate
5'-deoxy-5'-fluoroadenosine
xanthosine
guanosine
inosine
adenosine
uridine
cytidine
thymidine
2'-deoxycytidine
2'-deoxyuridine
coenzyme A
(R)-lipoate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
orotate
(S)-1-pyrroline-5-carboxylate
FAD
FMN
riboflavin
FADH2
FMNH2
reduced riboflavin
quercetin
quercetin-3-glucoside
rutin
hesperidin
naringin
prunin
hesperitin-7-O-β-D-glucoside
methanol
ethanol
butan-1-ol
glycerol
(S)-propane-1,2-diol
protocatechuate
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
D-xylulose
L-ribulose
α-D-ribofuranose
α-D-glucopyranose
β-D-glucopyranose
keto-D-fructose
β-D-fructofuranose
β-L-fucopyranose
α-L-fucopyranose
β-L-rhamnopyranose
α-L-rhamnopyranose
α-D-galactopyranose
β-D-galactopyranose
D-glyceraldehyde
N-acetyl-β-neuraminate
N-acetyl-α-D-mannosamine
4-deoxy-L-threo-hex-4-enopyranuronate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
4-phospho-D-erythronate
β-D-fructose 1,6-bisphosphate
D-allulose 6-phosphate
β-D-fructofuranose 6-phosphate
aldehydo-D-allose 6-phosphate
D-fructose 6-phosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
L-fuculose 1-phosphate
L-rhamnulose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
p-nitrophenyl-α-L-rhamnopyranoside
maltotriose
selaginose
raffinose
stachyose
maltotetraose
maltoheptaose
maltohexaose
maltopentaose
sucrose
α,α-trehalose
L-idonate
D-gluconate
geranyl diphosphate
(2E,6E)-farnesyl diphosphate
trans,octacis-decaprenyl phosphate
all-trans-4,4'-diapolycopene
all-trans-4,4'-diapophytofluene
all-trans-4,4'-diapo-ζ-carotene
all-trans-4,4'-diaponeurosporene
all-trans-retinol
all-trans-retinyl palmitate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-heptaprenyl diphosphate
geranylgeranyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
ferrichrome
anguibactin
urate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
salicylate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
4-nitrophenol
caldariellaquinol
caldariellaquinone
methylglyoxal
diacetyl
acetone
acetaldehyde
formaldehyde
butan-1-al
(S)-lactaldehyde
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
acetate
(R)-pantoate
5-chloro-5-deoxy-D-ribonate
carbamate
L-α-amino-ε-keto-pimelate
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
L-homoserine
O-succinyl-L-homoserine
L-glutamate-5-semialdehyde
L-homocysteine
O-phospho-L-homoserine
L-aspartate 4-semialdehyde
L-lysine
meso-diaminopimelate
L-isoleucine
L-leucine
L-valine
L-tyrosine
L-threonine
L-alanine
L-tryptophan
L-aspartate
L-proline
L-phenylalanine
L-glutamine
L-glutamate
L-serine
glycine
L-methionine
L-cysteine
L-arginine
L-histidine
L-asparagine
D-glutamate
D-aspartate
D-alanine
D-proline
L-cystathionine
L-aspartyl-4-phosphate
L,L-diaminopimelate
N-carbamoyl-L-aspartate
seleno-L-homocysteine
L-selenomethionine
L-saccharopine
3-phospho-L-serine
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
chorismate
fumarate
succinate
(S)-malate
(4S)-4-hydroxy-2-oxoglutarate
3-carboxy-cis,cis-muconate
cis-aconitate
D-threo-isocitrate
3-oxoadipate
3-phenyl-2-oxopropanoate
pyruvate
2-oxobutanoate
glyoxylate
5-chloro-4-hydroxy-2-oxopentanoate
2-oxoglutarate
formate
(R)-lactate
(R)-glycerate
palmitate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine
N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
a thiol group
α-D-glucosamine 6-phosphate
2-iminopropanoate
2-iminobutanoate
2-iminosuccinate
sn-glycerol 3-phosphate
DNA with lesion
protoheme
protoporphyrinogen IX
protoporphyrin IX
uroporphyrinogen-III
hydrogen sulfide
oxygen
2-chloroacetate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
(2R)-2,3-dihydroxy-3-methylbutanoate
preQ0
Fe3+
H+
ammonium
Na+
Fe2+
Co2+
Mn2+
hydrogencarbonate
OH-
selenide
superoxide
phosphate
triphosphate
diphosphate
chloride
hydroxyl radical
sn-glycero-3-phosphoethanolamine
glycerophosphoglycerol
glycerophosphoserine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
agmatine
N-acetylputrescine
N1-acetylspermine
N1-acetylspermidine
putrescine
spermidine
spermine
glutathione
methanethiol
taurine
L-cysteate
3-sulfopyruvate
acetyl-CoA
3'-dephospho-CoA
(E)-glutaconyl-CoA
succinyl-CoA
malonyl-CoA
(R)-2-hydroxyglutaryl-CoA
crotonyl-CoA
palmitoyl-CoA
(indol-3-yl)acetate
methyl (indol-3-yl)acetate
thiamine
nicotinate
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
(R)-NADHX
(S)-NADHX