an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

5-methylcytosine

(S)-dihydroorotate

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

O-acetyl-L-serine

α-ribazole 5'-phosphate

α-ribazole

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-2-amino-6-oxohexanoate

3-deoxy-D-manno-octulosonate 8-phosphate

oxaloacetate

L-canavanine

acetyl phosphate

L-β-lysine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

3-dehydroshikimate

aminoacetone

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

4'-phosphopantetheine

glycolate

β-D-ribosylnicotinate

L-histidinol phosphate

urea

shikimate

5-(methylsulfanyl)-ribulose 1-phosphate

hydrogen peroxide

butanoyl phosphate

CO₂

(indol-3 yl)acetyl-CoA

(indol-3-yl)pyruvate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

phosphoenolpyruvate

carbamoyl phosphate

N-carbamoyl-D-phenylglycine

D-phenylhydantoin

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

histidinol

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

β-nicotinate D-ribonucleotide

xanthine

citrate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

5,6-dimethylbenzimidazole

coproporphyrinogen III

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

pyruvic oxime

enol-phenylpyruvate

(R)-1-amino-2-propanol O-2-phosphate

N-(5-phosphoribosyl)-anthranilate

anthranilate

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

3-dehydroquinate

(R)-4'-phosphopantothenate

(R)-pantothenate

DNA without lesion

glycerone phosphate

nicotinate adenine dinucleotide

isopentenyl diphosphate

4-amino-4-deoxychorismate

3-phosphooxypyruvate

4-imidazolone-5-propanoate

urocanate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol 4-phosphate

acetoacetate

5-amino-6-(D-ribitylamino)uracil

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

prenyl diphosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

α-D-glucosamine 1-phosphate

selenophosphate

orotidine 5'-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

(S)-2-aceto-2-hydroxybutanoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

thiamine diphosphate

S-adenosyl 3-(methylsulfanyl)propylamine

urea-1-carboxylate

formamide

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

3-deoxy-α-D-manno-2-octulosonate

lipid IV_A

lipid A disaccharide (E. coli)

lipid X

(S)-2-acetolactate

2-dehydropantoate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

N²-acetyl-α-aminoadipate

hydroxylamine

ammonia

N²-succinylglutamate

carboxyphosphate

S-methyl-5'-thioadenosine

hydrogenobyrinate

propanoyl phosphate

preuroporphyrinogen

porphobilinogen

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

N⁶-(D-psicosyl)-L-lysine

dimethylamine

3-hydroxyanthranilate

histidinal

oxalosuccinate

3-hydroxypropanal

dialurate

N-Formyl-L-kynurenine

N⁵-carboxyaminoimidazole ribonucleotide

quinolinate

2-chloroacetate

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

oxygen

hydrogen sulfide

Mg-protoporphyrin

protoporphyrinogen IX

uroporphyrinogen-I

protoporphyrin IX

uroporphyrinogen-III

protoheme

cob(I)alamin

adenosylcobalamin

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-2

cobalt-precorrin-5B

cobalt-precorrin-8

cobalt-sirohydrochlorin

cobalt-precorrin-5A

adenosylcobinamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

cob(I)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

adenosyl-cobinamide phosphate

adenosylcobyrate

cobyrinate

cobalt-precorrin-6B

cobalt-precorrin-7

cobalt-precorrin-3

cobalt-factor III

cob(II)yrinate c-monoamide

hydrogen cyanide

ethylphosphate

phenylacetate

L-homocysteine

DNA with lesion

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

L-2-aminoadipate

carbamate

L-kynurenine

L-citrulline

L-methionine

L-glutamate

L-glutamine

L-tryptophan

L-aspartate

L-proline

L-serine

glycine

L-phenylalanine

L-lysine

L-alanine

L-threonine

L-arginine

L-tyrosine

L-asparagine

L-histidine

L-valine

L-isoleucine

L-leucine

L-cysteine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-ornithine

L-canaline

L-glutamate-5-semialdehyde

L-homoserine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

hypoglycin A

N⁶-(D-fructosyl)-L-lysine

meso-diaminopimelate

L-saccharopine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-formimino-L-glutamate

N-acetyl-L-glutamate

N⁶,N⁶-dimethyl-L-arginine

N-carbamoyl-L-aspartate

S-methyl-L-methionine

L-threonine 3-O-phosphate

3-phospho-L-serine

L,L-diaminopimelate

L-isoglutamine

D-proline

D-alanine

D-glutamate

(R)-β-lysine

β-alanine

trans-cinnamate

4-aminobenzoate

acetate

orotate

5-chloro-5-deoxy-D-ribonate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

butanoate

stearate

palmitate

laurate

(R)-lactate

pyruvate

formate

propanoate

2-oxoglutarate

2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

cis-homoaconitate

(1R,2S)-homoisocitrate

(2R)-homocitrate

cis-aconitate

D-threo-isocitrate

(3E)-2-oxohex-3-enedioate

chorismate

fumarate

succinate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

trehalose-trans-keto-mono-mycolate

trehalose-cis-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

6-O-α-mycolyl-trehalose 6-phosphate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-glucose

GDP-β-L-fucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-β-L-threo-pentapyranos-4-ulose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-α-D-glucuronate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

N⁶-(6-phospho-D-fructosyl)-L-lysine

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

α-D-xylopyranose

D-glyceraldehyde

glycolaldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

glycerol

α,α-trehalose

maltopentaose

maltohexaose

maltotetraose

maltoheptaose

maltotriose

(S)-propane-1,2-diol

ethanol

propan-1-ol

methylglyoxal

acetaldehyde

1-propanal

diacetyl

acetone

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

adenine

guanine

AMP

GMP

XMP

IMP

ATP

GTP

ITP

XTP

ADP

GDP

dADP

dGDP

dITP

dGTP

dATP

dGMP

dAMP

dIMP

hypoxanthine

xanthosine

adenosine

inosine

guanosine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

tetrahydromethanopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

cyclic pyranopterin phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

molybdopterin

molybdopterin adenine dinucleotide

5,10-methylene-tetrahydromethanopterin

MoO₂-molybdopterin cofactor

reduced riboflavin

FMNH₂

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

cytosine

thymine

preQ₁

UDP

dCMP

dUMP

dTMP

CTP

dTDP

UTP

dCDP

CDP

dUTP

dCTP

dTTP

dUDP

UMP

CMP

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

5-fluorouracil

sirohydrochlorin

precorrin-1

precorrin-2

precorrin-8x

precorrin-7

precorrin-6B

coenzyme A

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

ppGpp

pppGpp

adenylo-succinate

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

(S)-NADHX

(R)-NADHX

nicotinate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

(indol-3-yl)acetate

acetyl-CoA

(E)-glutaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

succinyl-CoA

malonyl-CoA

3'-dephospho-CoA

phenylacetyl-CoA

acetoacetyl-CoA

palmitoyl-CoA

stearoyl-CoA

lauroyl-CoA

butanoyl-CoA

propanoyl-CoA

crotonyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

glutathione

(R)-S-lactoylglutathione

(2R)-phospho-3-sulfolactate

3-sulfopyruvate

L-cysteate

(2R)-3-sulfolactate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

putrescine

spermidine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

Fe³⁺

Mg²⁺

Co²⁺

Mo²⁺

Zn²⁺

Fe²⁺

Ca²⁺

H⁺

ammonium

selenate

selenite

hydrogencarbonate

selenide

molybdate

chloride

phosphate

diphosphate

triphosphate

(indole-3-yl)acetonitrile

preQ₀

N-acetyl-β-neuraminate 9-phosphate

N-acetyl-D-mannosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate