an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

hexulose 6-phosphate

glutathione disulfide

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

glycerone phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

shikimate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

xanthine

autoinducer 2

nicotinate adenine dinucleotide

D-gluconate 6-phosphate

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

oxaloacetate

citrate

4'-phosphopantetheine

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(R)-mevalonate diphosphate

3-dehydroshikimate

α-ribazole

L-canavanine

H₂O

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(S)-dihydroorotate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

choline

2-hydroxyformononetin

(3R)-sophorol

2'-hydroxypseudobaptigenin

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(R)-pantothenate

(R)-4'-phosphopantothenate

urea-1-carboxylate

5-enolpyruvoyl-shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

glycolate

6-phospho D-glucono-1,5-lactone

shikimate 3-phosphate

selenophosphate

5-aminopentanoate

dihydrolipoate

phosphoenolpyruvate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

2-isopropylmaleate

citraconate

(2R,3S)-3-methylmalate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

thiamine phosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2R)-2-amino-4-oxopentanoate

(2R,4S)-2, 4-diaminopentanoate

3-oxopropanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

4-aminobutanoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

carbamoyl phosphate

carboxyphosphate

3-phosphooxypyruvate

β-D-fructose 2,6-bisphosphate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(lipoyl)adenylate

methylsalicylate

ethanolamine

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

anthranilate

N-(5-phosphoribosyl)-anthranilate

(R)-2,3-dihydroxy-3-methylpentanoate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(S)-2-acetolactate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

1,3-propanediol

3-hydroxypropanal

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

4-methyl-2-oxopentanoate

2-dehydropantoate

dialurate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

3-dehydroquinate

(S)-2-aceto-2-hydroxybutanoate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

formate

5-amino-6-(D-ribitylamino)uracil

L-selenocystathionine

quinolinate

2-succinylbenzoate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

L-histidinol phosphate

histidinol

1,4-dihydroxy-2-naphthoate

acetyl phosphate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

succinate semialdehyde

urea

isopentenyl diphosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

oxalosuccinate

CO₂

L-arginino-succinate

canavaninosuccinate

3-methylbenzyl alcohol

4-methylbenzyl alcohol

(R)-mevalonate

(R)-5-phosphomevalonate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

3-methylbenzaldehyde

salicyl alcohol

N-succinyl-L,L-2,6-diaminopimelate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

propanoyl phosphate

prenyl diphosphate

O-ureido-L-homoserine

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

orotidine 5'-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

hydrogen peroxide

1,4-dihydroxy-2-naphthoyl-CoA

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

(S)-4-amino-5-oxopentanoate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

(R)-1-amino-2-propanol O-2-phosphate

α-D-glucosamine 1-phosphate

γ-L-glutamyl 5-phosphate

DNA without lesion

S-ribosyl-L-homocysteine

DNA with lesion

L-homocysteine

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-factor III

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosyl-cobinamide phosphate

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-2

cobalt-precorrin-5A

cobalt-precorrin-5B

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cob(I)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(I)alamin

adenosylcobalamin

protoheme

uroporphyrinogen-I

protoporphyrin IX

uroporphyrinogen-III

siroheme

hydrogen sulfide

oxygen

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

2-octaprenylphenol

preQ₀

N-acetyl-β-neuraminate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

Fe³⁺

ammonium

H⁺

Ca²⁺

Zn²⁺

Mo²⁺

Fe²⁺

Co²⁺

sulfate

nitrate

selenide

hydrogencarbonate

OH^-

superoxide

phosphonate

phosphate

diphosphate

triphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

ferrichrome

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

spermidine

putrescine

S-(hydroxymethyl)glutathione

glutathione

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

all-trans-retinyl palmitate

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

(+)-7-epi-jasmonoyl-CoA

acetyl-CoA

CoA-disulfide

isobutanoyl-CoA

3'-dephospho-CoA

phytenoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxylinoleoyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

tributyrin

1,2-dibutyrin

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

nicotinate

riboflavin

thiamine

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

glycine betaine

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

ITP

isoguanine

8-oxo-dGTP

8-oxo-GTP

dGDP

dADP

dGTP

dATP

2'-deoxyinosine

GMP

AMP

GTP

IMP

adenylo-succinate

GDP

2'-deoxyadenosine

dAMP

2'-deoxyguanosine

dGMP

ATP

ADP

hypoxanthine

XMP

pppGpp

ppGpp

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

adenosine

inosine

guanosine

xanthosine

cytidine

uridine

thymidine

2'-deoxyuridine

2'-deoxycytidine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CMP

5-hydroxy-CTP

dTTP

dCTP

dUTP

CTP

UTP

dTMP

dUMP

dCMP

UMP

CMP

dCDP

dUDP

dTDP

UDP

CDP

preQ₁

thymine

uracil

adenine

guanine

5,6-dihydrothymine

5,6-dihydrouracil

UDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

precorrin-6B

precorrin-6A

precorrin-8x

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

orotate

(3R)-vestitone

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

benzyl alcohol

4-methylbenzaldehyde

benzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

2,3-dihydroxybenzoate

protocatechuate

salicylate

4-aminobenzoate

diacetyl

(R)-acetoin

glycolaldehyde

formaldehyde

acetaldehyde

1-propanal

(S)-lactaldehyde

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

β-D-ribopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

methanol

propan-1-ol

ethanol

glycerol

myo-inositol

1D-myo-inositol 4-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 3-monophosphate

(S)-propane-1,2-diol

octyl α-D-glucopyranoside

octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside

raffinose

selaginose

stachyose

sucrose

α,α-trehalose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

β-D-fructofuranose

keto-L-rhamnulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-galactose 1-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

L-rhamnulose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-gluconate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

dioleoyl phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

iron(III) dicitrate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

L-aspartate

(S)-malate

α,ω-9Z-octadecenedioate

(2S,3S)-2-methylcitrate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

pyruvate

propanoate

butanoate

7-hydroxylaurate

laurate

decanoate

octanoate

(R)-lactate

sophorosyloxydocosanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

(15Z)-tetracosenoate

oleate

linoleate

α-linolenate

palmitate

stearate

phytenate

(R)-pantoate

acetate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-cysteine

L-threonine

glycine

L-glutamine

L-tyrosine

L-histidine

L-lysine

L-arginine

L-glutamate

L-phenylalanine

L-methionine

L-tryptophan

L-isoleucine

L-leucine

L-valine

L-proline

L-alanine

β-alanine

D-glutamate

D-ornithine

D-aspartate

D-alanine

D-proline

L-ornithine

L-cystathionine

L,L-diaminopimelate

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

seleno-L-homocysteine

L-threonine 3-O-phosphate

3-phospho-L-serine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-homoserine

O-succinyl-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

L-canaline

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine