an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
bisorganyltrisulfane
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
selenodiglutathione
glutathioselenol
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
oxalate
shikimate
hydrogen selenide
urea
thiamine phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
glutathione disulfide
xanthine
(S)-2,3,4,5-tetrahydrodipicolinate
N-succinyl-L,L-2,6-diaminopimelate
N-succinyl-2-amino-6-ketopimelate
4-prenylphlorisobutyrophenone
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N1-(5-phospho-β-D-ribosyl)glycinamide
orotidine 5'-phosphate
coproporphyrinogen III
porphobilinogen
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
4-amino-2-methyl-5-pyrimidinemethanol
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
4-phosphooxy-L-threonine
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
β-D-fructose 2,6-bisphosphate
1,4-dihydroxy-2-naphthoate
isochorismate
carbonic acid
3-hydroxypropanoate
3-oxopropanoate
acetyl phosphate
chlorite
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
CDP-glycerol
ManNAc-GlcNAc-PP-undecaprenol
citraconate
(2R,3S)-3-methylmalate
γ-L-glutamyl 5-phosphate
2-(α-hydroxyethyl)thiamine diphosphate
2-dehydropantoate
nicotinate adenine dinucleotide
L-selenocystathionine
3-deoxy-D-arabino-heptulosonate 7-phosphate
carboxyphosphate
(R)-4'-phosphopantothenoyl-L-cysteine
4'-phosphopantetheine
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
glycerone phosphate
DNA without lesion
thiamine diphosphate
L-canavanine
carbamoyl phosphate
N-acetylglutamyl-phosphate
D-erythro-imidazole-glycerol-phosphate
histidinal
3-phosphooxypyruvate
prenyl diphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-C-methyl-D-erythritol 4-phosphate
7,8-didemethyl-8-hydroxy-5-deazariboflavin
(2S)-lactyl-2-diphospho-5'-guanosine
O-acetyl-L-serine
S-ribosyl-L-homocysteine
autoinducer 2
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
histidinol
glycolate
(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate
(4Z)-2-oxohept-4-enedioate
(lipoyl)adenylate
hydrogen peroxide
α-D-glucosamine 1-phosphate
5-phospho-β-D-ribosylamine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
4-amino-4-deoxychorismate
β-nicotinate D-ribonucleotide
quinolinate
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
1,4-dihydroxy-2-naphthoyl-CoA
(R)-pantothenate
(R)-4'-phosphopantothenate
oxalosuccinate
(2S)-2-isopropylmalate
2-isopropylmaleate
isopentenyl diphosphate
citrate
adenosine 5'-phosphoselenate
adenosine 5'-phosphosulfate
3-dehydroquinate
3-dehydroshikimate
(S)-dihydroorotate
oxaloacetate
phosphoenolpyruvate
anthranilate
L-arginino-succinate
O-ureido-L-homoserine
canavaninosuccinate
N-acetyl-L-glutamate 5-semialdehyde
N-(5-phosphoribosyl)-anthranilate
imidazole acetol-phosphate
L-histidinol phosphate
prephenate
succinate semialdehyde
(2R,3S)-3-isopropylmalate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
CO2
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
H2O
α-D-glucosamine 6-phosphate
hydrogen cyanide
L-homocysteine
DNA with lesion
phenylacetate
ethylphosphate
protoheme
protoporphyrinogen IX
uroporphyrinogen-I
coproporphyrinogen I
protoporphyrin IX
uroporphyrinogen-III
oxygen
hydrogen sulfide
2-iminosuccinate
2-iminopropanoate
2-iminobutanoate
2-chloroacetate
sn-glycerol 1-phosphate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2S)-2-phospholactate
(2R)-2,3-dihydroxy-3-methylbutanoate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
CMP-N-acetyl-β-neuraminate
(R)-citramalate
3-(all-trans-octaprenyl)benzene-1,2-diol
2-octaprenylphenol
2-methoxy-6-(all-trans-octaprenyl)phenol
N-acetyl-β-neuraminate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
Fe3+
H+
Na+
ammonium
Fe2+
Co2+
Mo2+
hydrogensulfite
selenite
OH-
molybdate
thiosulfate
superoxide
sulfite
hydrogencarbonate
selenate
sulfate
phosphonate
phosphate
triphosphate
diphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
pristanate
sn-glycero-3-phosphoethanolamine
glycine betaine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
putrescine
spermidine
S-(hydroxymethyl)glutathione
γ-L-glutamyl-[(S)-allyl]-L-cysteine
S-allyl-L-cysteine
γ-L-glutamyl-(S)-methyl-L-cysteine
γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine
S-trans-1-propenyl-L-cysteine
thiocyanate
glutathione
methanethiol
S-sulfanylglutathione
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
isobutanoyl-CoA
malonyl-CoA
succinyl-CoA
linoleoyl-CoA
α-linolenoyl-CoA
3'-dephospho-CoA
2-methylacetoacetyl-CoA
acetyl-CoA
(S)-methylmalonyl-CoA
phytenoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
oleoyl-CoA
7-hydroxylauroyl-CoA
18-hydroxystearoyl-CoA
16-hydroxypalmitoyl-CoA
18-hydroxyoleoyl-CoA
(Z)-15-tetracosenoyl-CoA
propanoyl-CoA
decanoyl-CoA
lauroyl-CoA
octanoyl-CoA
stearoyl-CoA
palmitoyl-CoA
pristanoyl-CoA
hexadecanedioyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
cholest-4-en-3-one
cholesterol
cholest-5-en-3-one
thiamine
riboflavin
nicotinate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
7,8-dihydrofolate monoglutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
menadione
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADH
NADPH
NAD+
NADP+
caldariellaquinone
caldariellaquinol
ubiquinol-8
menaquinol-8
demethylmenaquinol-8
3-demethylubiquinol-8
isoguanine
8-oxo-dGTP
8-oxo-GTP
hypoxanthine
2'-deoxyadenosine
2'-deoxyinosine
2'-deoxyguanosine
pppGpp
ppGpp
5'-deoxyadenosine
dIDP
dITP
dGMP
dAMP
ITP
IDP
adenylo-succinate
IMP
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
dATP
dADP
dGTP
dGDP
GTP
GDP
ADP
ATP
XMP
GMP
AMP
xanthosine
guanosine
inosine
adenosine
cytidine
uridine
2'-deoxycytidine
thymidine
2'-deoxyuridine
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CTP
5-hydroxy-CMP
dTTP
dCTP
dUTP
CTP
UTP
dTMP
dCMP
dUMP
CMP
UMP
dTDP
dUDP
dCDP
CDP
UDP
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
ADP-α-D-glucose
thymine
uracil
guanine
adenine
5,6-dihydrothymine
5,6-dihydrouracil
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-muramate
UDP-α-D-galactose
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-4-O-demethyl-β-L-noviose
dTDP-4-dehydro-5-methyl-β-L-rhamnose
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
molybdopterin
(R)-lipoate
coenzyme A
oxidized coenzyme F420-0
MoO2-molybdopterin cofactor
(S)-1-pyrroline-5-carboxylate
precorrin-1
precorrin-2
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
cyclic pyranopterin phosphate
molybdopterin adenine dinucleotide
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydropteroate
orotate
4-hydroxybenzoate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
menadiol
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
4-aminobenzoate
diacetyl
methylglyoxal
formaldehyde
acetaldehyde
D-glyceraldehyde
α-D-ribofuranose
α-D-xylopyranose
α-D-galactopyranose
β-D-galactopyranose
methanol
ethanol
glycerol
myo-inositol
1D-myo-inositol 4-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 2-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 5-monophosphate
1D-myo-inositol 3-monophosphate
maltotriose
maltotetraose
maltoheptaose
maltohexaose
maltopentaose
sucrose
α,α-trehalose
keto-D-fructose
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-α-D-mannosamine
N-acetyl-α-D-glucosamine
D-xylulose
L-ribulose
β-D-fructofuranose
1-O-acetyl-α-maltose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α,α-trehalose 6-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
L-ribulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
D-gluconate
18-hydroxystearate
16-hydroxypalmitate
18-hydroxyoleate
1-(oleoyl)-sn-glycero-3-phosphoethanolamine
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-oleoyl-sn-glycerol 3-phosphate
geranyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
all-trans-octaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
phlorisovalerophenone
deoxyhumulone
deoxycohumulone
4-prenylphlorisovalerophenone
6-aminopenicillanate
isopenicillin N
penicillin G
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
chorismate
succinate
fumarate
L-aspartate
(S)-malate
α,ω-9Z-octadecenedioate
cis-aconitate
D-threo-isocitrate
3-(4-hydroxyphenyl)pyruvate
3-phenyl-2-oxopropanoate
pyruvate
glyoxylate
2-oxoglutarate
2-oxobutanoate
acetate
formate
(S)-lactate
(R)-lactate
decanoate
7-hydroxylaurate
laurate
octanoate
(15Z)-tetracosenoate
linoleate
α-linolenate
stearate
palmitate
oleate
phytenate
(R)-pantoate
L-α-amino-ε-keto-pimelate
L-2-aminoadipate
carbamate
L-serine
L-tyrosine
glycine
L-threonine
L-glutamine
L-cysteine
L-lysine
L-histidine
L-arginine
L-glutamate
L-phenylalanine
L-proline
L-alanine
L-tryptophan
L-valine
L-isoleucine
L-leucine
L-methionine
β-alanine
D-glutamate
D-aspartate
D-alanine
L,L-diaminopimelate
L-aspartyl-4-phosphate
L-cystathionine
L-ornithine
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
seleno-L-homocysteine
L-selenomethionine
3-phospho-L-serine
S-methyl-L-cysteine
N-acetyl-L-glutamate
N-acetyl-L-methionine
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
O-succinyl-L-homoserine
L-aspartate 4-semialdehyde
L-homoserine
hypoglycin A
L-canaline
S-adenosyl-L-methionine
O-phospho-L-homoserine
L-glutamate-5-semialdehyde
S-adenosyl-L-homocysteine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
hypoglycin B
L-cysteinylglycine
D-alanyl-D-alanine