an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

glutathioselenol

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

S-(hydroxymethyl)mycothiol

1-piperideine 6-carboxylate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

1,2-dihydro-β-NADP

4-oxoglutaramate

ammonia

selenodiglutathione

hydrogen selenide

isopropylamine

3-maleylpyruvate

(salicyl)adenylate

1-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

1-(2-amino-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

1-pyrroline

N-Formyl-L-kynurenine

S-ribosyl-L-homocysteine

autoinducer 2

2-dehydro-3-deoxy-D-galactonate 6-phosphate

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

glutathione disulfide

S-methyl-5-thio-α-D-ribose 1-phosphate

N-ethylammelide

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

4-methyl-3-oxoadipate-enol-lactone

(4,5-dihydro-5-oxofuran-2-yl)-acetate

methylamine

N-ethylglycine

2-iminoacetate

(R)-4'-phosphopantothenoyl-L-cysteine

N-acetylglutamyl-phosphate

L-canavanine

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

(2S)-4-acetamido-2-aminobutanoate

ectoine

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

3-oxocholoyl-CoA

allopregnanolone

deoxycholoyl-CoA

12α-hydroxy-3-oxocholan-24-oyl-CoA

deethylsimazine

N-ethylammeline

S-methyl-5'-thioinosine

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

citraconate

(2R,3S)-3-methylmalate

thiamine phosphate

4'-phosphopantetheine

quinolinate

(S)-mandelate

(R)-mandelate

(4-hydroxyphenyl)acetate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

cyclohexanone

ε-caprolactone

6-deoxyerythronolide B

chlorite

3'-phosphoadenylyl-sulfate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2,5-dioxopentanoate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

diethylphosphate

diethylthiophosphate

dimethylthiophosphate

orotidine 5'-phosphate

2-dehydro-3-deoxy-D-galactonate

4-hydroxy-2-nonenal

prephenate

DNA without lesion

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

D-erythro-imidazole-glycerol-phosphate

histidinal

shikimate

5-amino-6-(D-ribitylamino)uracil

3-hydroxyanthranilate

CDP-glycerol

poly (glycerol phosphate)

hydroxypyruvate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-5-hydroxyisourate

(S)-ureidoglycolate

prenyl diphosphate

1,4-dihydroxy-2-naphthoate

dimethylamine

acetyl phosphate

4-guanidinobutanoate

urea

4-methyl-3-oxoadipate

(S)-2-amino-6-oxohexanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-dehydro-2-deoxy-D-gluconate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2,3,5,6-tetracholorophenol

homogentisate

4-maleyl-acetoacetate

4-fumaryl-acetoacetate

2-maleylacetate

methylsalicylate

salicyl alcohol

1-O-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol 3-phosphate

β-D-fructose 2,6-bisphosphate

5-aminolevulinate

porphobilinogen

(S)-4-amino-5-oxopentanoate

5-guanidino-2-oxopentanoate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

carbonic acid

2-dehydropantoate

oxalate

L-β-lysine

propanoyl phosphate

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

urea-1-carboxylate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

D-gluconate 6-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

(2S)-lactyl-2-diphospho-5'-guanosine

coproporphyrinogen III

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

histidinol

glycolate

3-hydroxypropanoate

3-oxopropanoate

2-C-methyl-D-erythritol 4-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

xanthine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N6,N6,O-tridemethylpuromycin

N-acetyl-N6,N6,O-tridemethylpuromycin

ethanolamine

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

(S)-dihydroorotate

carbamoyl phosphate

carboxyphosphate

N-acetyl-L-glutamate 5-semialdehyde

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

4-imidazolone-5-propanoate

urocanate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

4-methyl-2-oxopentanoate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

glycerone phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

acetoacetate

citrate

formamide

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

dihydroxyacetone

2-dehydro-3-deoxy-D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

anthranilate

N-(5-phosphoribosyl)-anthranilate

imidazole acetol-phosphate

L-histidinol phosphate

aminoacetone

1-deoxy-L-glycero-tetrulose 4-phosphate

isopentenyl diphosphate

tartronate semialdehyde

preuroporphyrinogen

hydroxyatrazine

N-isopropylammelide

ethylamine

4-aminobutanoate

hydrogen peroxide

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

3-dehydroquinate

3-dehydroshikimate

5-phospho-β-D-ribosylamine

oxaloacetate

phosphoenolpyruvate

(R)-pantothenate

(R)-4'-phosphopantothenate

succinate semialdehyde

N-succinyl-L,L-2,6-diaminopimelate

oxalosuccinate

CO₂

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

α-D-glucosamine 1-phosphate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

3-methyl-2-oxobutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

H₂O

4-methylphenol

L-homocysteine

(S)-ureidoglycine

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

phenylacetate

ethylphosphate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

cobalt-sirohydrochlorin

cobalt-precorrin-2

adenosylcobyrate

cobalt-precorrin-6B

cobalt-precorrin-6A

cob(II)yrinate c-monoamide

cobyrinate

Mg-protoporphyrin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(II)yrinate a,c-diamide

protoheme

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

hydrogen sulfide

oxygen

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-chloromaleylacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

pentachlorophenol

parathion

paraoxon

4-nitrophenol

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

FAD

FADH₂

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

caldariellaquinol

ubiquinol-10

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-8

caldariellaquinone

NADH

NADPH

NAD⁺

NADP⁺

glycine betaine

hydroxyl radical

superoxide

(2E,6E)-farnesyl diphosphate

pristanate

Fe³⁺

ammonium

H⁺

Fe²⁺

Mg²⁺

Co²⁺

hydrogensulfite

selenite

OH^-

sulfate

thiosulfate

sulfite

hydrogencarbonate

selenate

chloride

phosphate

triphosphate

diphosphate

S-(hydroxymethyl)glutathione

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

mycothiol

deacetylmycothiol

glutathione

thiocyanate

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

dodecyl sulfate

betaine aldehyde

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

4-aminobutanal

putrescine

spermidine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

cyanuric acid

actinorhodin intermediate

actinorhodin

4-hydroxyacetophenone

4-hydroxybenzoate

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

atrazine

amino-parathion

methyl parathion

2,6-dichlorohydroquinone

2,3,6-trichlorohydroquinone

hydroquinone

2,3,5,6-tetrachlorohydroquinone

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

4-aminophenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxybenzoate

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

dimeric urushiol peroxide

salicylate

4-aminobenzoate

preQ₀

coenzyme A

oxidized coenzyme F₄₂₀-0

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

MoO₂-molybdopterin cofactor

thio-molybdenum cofactor

thiamine

nicotinamide

riboflavin

nicotinate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

all-trans-retinol

menadione

5-α-pregnane-3,20-dione

cholest-4-en-3-one

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

deoxycholate

cholate

3-dehydrocholate

lanosterol

17-β-hydroxy-5-α-androstan-3-one

campest-4-en-3β-ol

7α-hydroxy-5β-cholestan-3-one

7α,12α-dihydroxy-5β-cholestan-3-one

androst-4-ene-3,17-dione

campest-4-en-3-one

5α-androstane-3,17-dione

cholesterol

cholest-5-en-3-one

ergosterol

5β-cholestane-3α,7α-diol

5β-cholestane-3α,7α,12α-triol

androsterone

5-α-androstan-3α,17β-diol

lanosteryl oleate

ergosteryl oleate

testosterone

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

D-glucono-1,5-lactone

erythronolide B

3-α-mycarosylerythronolide B

erythromycin D

cis-dienelactone

trans-dienelactone

all-trans-retinyl palmitate

2-methylbutanoyl-CoA

isovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

acryloyl-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

choloyl-CoA

phenylacetyl-CoA

4-cis-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

4-trans-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

(5Z)-tetradecenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

malonyl-CoA

4-hydroxybenzoyl-CoA

3-hydroxypropanoyl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

formyl-CoA

oxalyl-CoA

salicyl-CoA

gentisyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxylinoleoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

phytanoyl-CoA

cis-vaccenoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

palmitoleoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

allantoate

6-aminopenicillanate

isopenicillin N

penicillin G

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

chorismate

maleate

L-aspartate

succinate

fumarate

(S)-malate

α,ω-9Z-octadecenedioate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

pyruvate

acetate

formate

propanoate

(S)-lactate

(R)-lactate

octanoate

laurate

decanoate

7-hydroxylaurate

gentisate

18-hydroxyoleate

18-hydroxystearate

16-hydroxypalmitate

(15Z)-tetracosenoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

oleate

α-linolenate

linoleate

stearate

palmitate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

phytenate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

5-deoxy-D-glucuronate

orotate

(R)-pantoate

D-gluconate

(S)-1-pyrroline-5-carboxylate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

L-kynurenine

carbamate

L-serine

L-proline

L-alanine

L-leucine

glycine

L-glutamine

(R)-β-lysine

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

L-glutamate

L-lysine

L-arginine

L-histidine

L-tyrosine

L-phenylalanine

L-tryptophan

D-arginine

D-alanine

L-aspartyl-4-phosphate

L-saccharopine

iminoarginine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

S-methyl-L-cysteine

sarcosine

N⁶,N⁶-dimethyl-L-arginine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

L-isoglutamine

L-methionine

L-cysteine

L-asparagine

L-2,4-diaminobutanoate

L-isoleucine

L-valine

L-threonine

L-ornithine

L,L-diaminopimelate

L-citrulline

L-homoserine

L-canaline

hypoglycin A

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

glyoxylate

2-oxoglutarate

hypoglycin B

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

1-octanol

1-dodecanol

glycerol

methanol

ethanol

myo-inositol

1D-myo-inositol 5-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 3-monophosphate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

5-deoxy-dihydrokalafungin

(S)-DNPA

2-((1R,3S),-1',9'-dihydroxy-1'-methyl-10'-oxo-3',4',5',10'-tetrahydro-1H-benzo[g]isochromen-3'-yl)acetate

4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-oxobutanoate

(S)-4-(3'-acetyl-5'-hydroxy-4'-oxo-1',4'-dihydronapthalen-2'-yl)-3-hydroxybutanoate

phlorisovalerophenone

deoxycohumulone

4-prenylphlorisovalerophenone

deoxyhumulone

dihydrokalafungin

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

cellotetraose

β-D-cellobiose

raffinose

stachyose

sucrose

α,α-trehalose

β-D-fructofuranose

α-L-rhamnopyranose

β-L-rhamnopyranose

keto-D-fructose

D-xylulose

D-ribulose

L-ribulose

α-D-ribofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

N-acetyl-β-D-mannosamine

D-glyceraldehyde

α-D-galactopyranose

keto-L-rhamnulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α,α-trehalose 6-phosphate

UDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-glucose

GDP-α-D-mannose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

dTDP-D-desosamine

dTDP-β-L-mycarose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-galactonate

diacetyl

methylglyoxal

1-octanal

formaldehyde

acetaldehyde

(S)-lactaldehyde

precorrin-3A

precorrin-1

precorrin-2

precorrin-6A

precorrin-6B

precorrin-7

precorrin-5

precorrin-3B

precorrin-4

precorrin-8x

sirohydrochlorin

dTMP

uracil

dCMP

dTDP

dTTP

CTP

dCTP

UTP

dUTP

dUMP

dUDP

UDP

dCDP

CDP

UMP

CMP

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

thymine

hypoxanthine

adenine

guanine

isoguanine

preQ₁

xanthosine

guanosine

inosine

adenosine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

GTP

ITP

ATP

GDP

IDP

ADP

GMP

IMP

XMP

AMP

dITP

dGTP

dATP

dIDP

dADP

dGDP

dGMP

dAMP

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

8-oxo-dGTP

8-oxo-GTP

pppGpp

ppGpp

5'-deoxyadenosine

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA