an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
5-phospho-β-D-ribosylamine
L-selenocystathionine
N-Formyl-L-kynurenine
(2-hydroxyphenyl)acetate
homogentisate
4-maleyl-acetoacetate
N2-succinylglutamate
3-hydroxypropanoate
3-oxopropanoate
porphobilinogen
thiamine phosphate
ethanolamine
(R)-mevalonate diphosphate
(R)-mevalonate
(R)-5-phosphomevalonate
(S)-2-amino-6-oxohexanoate
2-(α-hydroxyethyl)thiamine diphosphate
thiamine diphosphate
N5-carboxyaminoimidazole ribonucleotide
adenosine 5'-phosphosulfate
adenosine 5'-phosphoselenate
isopentenyl diphosphate
prenyl diphosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
prephenate
7-carboxy-7-deazaguanine
hexulose 6-phosphate
(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate
(4Z)-2-oxohept-4-enedioate
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
quinolinate
orotidine 5'-phosphate
3-dehydroquinate
3-dehydroshikimate
(S)-2,3,4,5-tetrahydrodipicolinate
N-succinyl-2-amino-6-ketopimelate
shikimate
shikimate 3-phosphate
xanthine
5-amino-6-(D-ribitylamino)uracil
anthranilate
lipid X
lipid A disaccharide (E. coli)
urea
cyanamide
N1-(5-phospho-β-D-ribosyl)glycinamide
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
4-fumaryl-acetoacetate
acetoacetate
O-ureido-L-homoserine
N-acetyl-L-glutamate 5-semialdehyde
L-arginino-succinate
canavaninosuccinate
L-canavanine
3-deoxy-D-manno-octulosonate 8-phosphate
N-acetyl-D-muramate 6-phosphate
3-deoxy-α-D-manno-2-octulosonate
2-methyl-1,4-benzoquinone
methyl-1,4-benzoquinol
1-deoxy-L-glycero-tetrulose 4-phosphate
4'-phosphopantetheine
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
nicotinate adenine dinucleotide
4-methyl-2-oxopentanoate
4-imidazolone-5-propanoate
DNA without lesion
histidinal
oxalosuccinate
coproporphyrinogen III
3-hydroxyanthranilate
2-amino-3-carboxymuconate-6-semialdehyde
phosphoenolpyruvate
(S)-dihydroorotate
oxaloacetate
carbamoyl phosphate
carboxyphosphate
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
carbonic acid
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
hydrogen peroxide
β-nicotinate D-ribonucleotide
β-D-ribosylnicotinate
CO2
3-deoxy-D-glycero-2,5-hexodiulosonate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
glycerone phosphate
citrate
L-histidinol phosphate
histidinol
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
H2O
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
aminoacetone
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1-piperideine 6-carboxylate
4-oxoglutaramate
N-acetylglutamyl-phosphate
S-ribosyl-L-homocysteine
autoinducer 2
selenodiglutathione
glutathioselenol
hydrogen selenide
glutathione disulfide
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
(R)-4'-phosphopantothenate
(R)-pantothenate
(2S)-2-isopropyl-3-oxosuccinate
N-succinyl-L,L-2,6-diaminopimelate
lipid IVA
formamide
4-phosphooxy-L-threonine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
(2S)-2-isopropylmalate
5-enolpyruvoyl-shikimate 3-phosphate
(S)-ureidoglycolate
pimeloyl-CoA
8-amino-7-oxononanoate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
(R)-4'-phosphopantothenoyl-L-cysteine
3-phosphooxypyruvate
2-dehydropantoate
2-dehydro-3-deoxy-D-gluconate
urocanate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
2-keto-D-gluconate
2,5-didehydro-D-gluconate
DNA with lesion
L-homocysteine
ethylphosphate
adenosylcobalamin
cob(I)alamin
Mg-protoporphyrin
protoheme
protoporphyrin IX
protoporphyrinogen IX
uroporphyrinogen-I
coproporphyrinogen I
uroporphyrinogen-III
oxygen
hydrogen sulfide
2-iminopropanoate
2-iminobutanoate
2-iminosuccinate
β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
ω-saturated C55 dolichol phosphate
(2R)-2,3-dihydroxy-3-methylbutanoate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
3-(all-trans-octaprenyl)benzene-1,2-diol
2-octaprenylphenol
2-methoxy-6-(all-trans-octaprenyl)phenol
preQ0
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
Fe3+
K+
H+
ammonium
Fe2+
Mg2+
superoxide
sulfite
selenate
selenide
hydrogencarbonate
sulfate
hydrogensulfite
selenite
OH-
phosphonate
phosphate
triphosphate
diphosphate
hydroxyl radical
sn-glycero-3-phosphoethanolamine
glycerophosphoglycerol
glycerophosphoserine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
dehydrospermidine
spermidine
S-(hydroxymethyl)glutathione
methanethiol
glutathione
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
L-cysteate
3-sulfopyruvate
3-sulfino-L-alanine
3-methylcrotonyl-CoA
3-methylglutaconyl-CoA
malonyl-CoA
3'-dephospho-CoA
2-methylacetoacetyl-CoA
succinyl-CoA
acetyl-CoA
isovaleryl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
(R)-methylmalonyl-CoA
(S)-malyl-CoA
(S)-3-hydroxybutanoyl-CoA
propanoyl-CoA
lauroyl-CoA
stearoyl-CoA
palmitoyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
riboflavin
thiamine
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
7,8-dihydrofolate monoglutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
menadione
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADPH
NADH
NADP+
NAD+
caldariellaquinone
caldariellaquinol
ubiquinol-8
menaquinol-8
demethylmenaquinol-8
3-demethylubiquinol-8
2'-deoxyinosine
hypoxanthine
2'-deoxyadenosine
dAMP
2'-deoxyguanosine
dGMP
5'-deoxyadenosine
1-(5-phospho-β-D-ribosyl)-ATP
adenylo-succinate
dADP
dATP
IDP
ITP
dIDP
dITP
dGDP
dGTP
GDP
GTP
IMP
GMP
XMP
AMP
ATP
ADP
isoguanine
8-oxo-dGTP
8-oxo-GTP
1-(5-phospho-β-D-ribosyl)-AMP
cyclic-GMP
adenosine
inosine
guanosine
xanthosine
cytidine
uridine
thymidine
2'-deoxyuridine
2'-deoxycytidine
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CTP
dTTP
dCTP
dUTP
UTP
CTP
dCMP
dUMP
dTMP
CMP
UMP
dTDP
dCDP
dUDP
UDP
CDP
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
GDP-α-D-mannose
GDP-4-dehydro-α-D-rhamnose
GDP-β-L-fucose
preQ1
uracil
guanine
adenine
CMP-3-deoxy-β-D-manno-octulosonate
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-glucuronate
UDP-α-D-galactofuranose
UDP-α-D-galactose
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
coenzyme A
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin
(S)-1-pyrroline-5-carboxylate
precorrin-1
precorrin-2
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
7,8-dihydroneopterin 3'-triphosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydropteroate
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
(6R)-4a-hydroxy-tetrahydrobiopterin
6-carboxy-5,6,7,8-tetrahydropterin
orotate
(+)-taxifolin
(+)-dihydrokaempferol
(+)-dihydromyricetin
kaempferol
quercetin
myricetin
4-hydroxybenzoate
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
protocatechuate
menadiol
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
4-aminobenzoate
diacetyl
methylglyoxal
glycolaldehyde
acetaldehyde
formaldehyde
D-glyceraldehyde
α-D-xylopyranose
α-L-rhamnopyranose
β-L-rhamnopyranose
α-D-glucopyranose
β-D-glucopyranose
α-D-galactopyranose
β-D-galactopyranose
ethanol
methanol
glycerol
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
isoprimeverose
raffinose
stachyose
sucrose
4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate
4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate
α,α-trehalose
keto-D-fructose
D-xylulose
L-ribulose
D-ribulose
β-D-fructofuranose
4-deoxy-L-threo-hex-4-enopyranuronate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
D-mannonate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
chorismate
succinate
fumarate
L-aspartate
(S)-malate
cis-aconitate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
3-oxoadipate
3-(4-hydroxyphenyl)pyruvate
3-phenyl-2-oxopropanoate
pyruvate
2-oxoglutarate
2-oxobutanoate
glyoxylate
acetate
formate
(R)-lactate
laurate
8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate
dinor-12-oxo-phytodienoate
stearate
palmitate
(R)-pantoate
L-kynurenine
carbamate
L-α-amino-ε-keto-pimelate
L-serine
L-tyrosine
L-asparagine
L-threonine
glycine
L-glutamine
L-lysine
L-arginine
L-histidine
L-glutamate
L-isoleucine
L-valine
L-selenocysteine
L-leucine
L-alanine
L-phenylalanine
L-tryptophan
L-proline
L-methionine
β-alanine
D-glutamate
D-alanine
L-aspartyl-4-phosphate
L-ornithine
L-cystathionine
L-isoglutamine
L,L-diaminopimelate
N-carbamoyl-L-aspartate
formyl-L-isoglutamine
N-formimino-L-glutamate
N-acetyl-L-ornithine
N-acetyl-L-citrulline
seleno-L-homocysteine
L-saccharopine
L-2-amino-3-oxobutanoate
3-phospho-L-serine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
3-hydroxy-L-kynurenine
O-acetyl-L-homoserine
L-citrulline
L-aspartate 4-semialdehyde
L-homoserine
L-glutamate-5-semialdehyde
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
D-alanyl-D-alanine