an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
H2O
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
imidazole acetol-phosphate
D-erythro-imidazole-glycerol-phosphate
histidinol
L-histidinol phosphate
CO2
(S)-dihydroorotate
coproporphyrinogen III
citrate
3-dehydroshikimate
shikimate
oxaloacetate
oxalosuccinate
carboxyphosphate
carbamoyl phosphate
5-dehydro-D-gluconate
3-deoxy-D-glycero-2,5-hexodiulosonate
phosphoenolpyruvate
quinolinate
β-nicotinate D-ribonucleotide
glycerone phosphate
β-D-ribosylnicotinate
hydrogen peroxide
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
CDP-glycerol
(R)-mandelate
(S)-mandelate
isopentenyl diphosphate
(R)-mevalonate diphosphate
porphobilinogen
2-maleylacetate
acetoacetate
4-fumaryl-acetoacetate
(2-hydroxyphenyl)acetate
homogentisate
4-maleyl-acetoacetate
shikimate 3-phosphate
(R)-pantothenate
phosphonoacetate
prenyl diphosphate
3-phosphooxypyruvate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
orotidine 5'-phosphate
DNA without lesion
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
4-amino-4-deoxychorismate
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
4-prenylphlorisobutyrophenone
glycolate
3-dehydroquinate
3-deoxy-D-arabino-heptulosonate 7-phosphate
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
histidinal
urea
thiamine diphosphate
formamide
4'-phosphopantetheine
propane-1,3-diamine
xanthine
L-canavanine
2-dehydropantoate
3-methyl-2-oxobutanoate
(R)-4'-phosphopantothenoyl-L-cysteine
7-carboxy-7-deazaguanine
preuroporphyrinogen
(R)-4'-phosphopantothenate
3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA
anthranilate
N-(5-phosphoribosyl)-anthranilate
nicotinate adenine dinucleotide
1,4-dihydroxy-2-naphthoate
3-deoxy-α-D-manno-2-octulosonate
urocanate
4-imidazolone-5-propanoate
pyrazine-2-carboxylate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(R)-5-phosphomevalonate
(R)-mevalonate
(S)-2-amino-6-oxohexanoate
selenophosphate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
2-dehydro-3-deoxy-D-gluconate
O-acetyl-L-serine
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
3-amino-1-hydroxyacetone 1-phosphate
4-phosphooxy-L-threonine
5-amino-6-(D-ribitylamino)uracil
lipid A disaccharide (E. coli)
lipid X
5-enolpyruvoyl-shikimate 3-phosphate
6-phospho D-glucono-1,5-lactone
carbonic acid
4-hydroxy-2-nonenal
thiamine phosphate
2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate
isochorismate
D-gluconate 6-phosphate
α-D-glucosamine 1-phosphate
3-oxopropanoate
3-hydroxypropanoate
(4Z)-2-oxohept-4-enedioate
(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate
L-selenocystathionine
N5-carboxyaminoimidazole ribonucleotide
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
4-methyl-2-oxopentanoate
N-acetyl-D-muramate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
8-amino-7-oxononanoate
pimeloyl-CoA
(lipoyl)adenylate
lipid IVA
3-deoxy-D-manno-octulosonate 8-phosphate
1-deoxy-L-glycero-tetrulose 4-phosphate
(S)-3-methyl-2-oxopentanoate
4-oxoglutaramate
1-piperideine 6-carboxylate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
aminoacetone
1,2-dihydro-β-NADP
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
ammonia
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2-amino-3-carboxymuconate-6-semialdehyde
glutathione disulfide
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
N-succinyl-L,L-2,6-diaminopimelate
autoinducer 2
S-ribosyl-L-homocysteine
L-arginino-succinate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
carbamate
L-α-amino-ε-keto-pimelate
L-citrulline
L-glutamine
glycine
L-glutamate
L-aspartate
L-proline
L-tryptophan
L-serine
L-phenylalanine
L-asparagine
L-tyrosine
L-isoleucine
L-alanine
L-histidine
L-threonine
L-valine
L-arginine
L-lysine
L-methionine
L-leucine
L-glutamate-5-semialdehyde
L-ornithine
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
L-homocysteine
L-canaline
3-sulfino-L-alanine
1-aminocyclopropane-1-carboxylate
L-homoserine
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
D-ornithine
meso-diaminopimelate
L-2-amino-3-oxobutanoate
L-aspartyl-4-phosphate
seleno-L-homocysteine
formyl-L-isoglutamine
N-formimino-L-glutamate
N-carbamoyl-L-aspartate
3-phospho-L-serine
L,L-diaminopimelate
L-2,4-diaminobutanoate
L-cystathionine
L-isoglutamine
D-alanine
D-glutamate
D-lysine
D-proline
β-alanine
protocatechuate
4-aminobenzoate
acetate
D-gluconate
(R)-pantoate
orotate
(S)-1-pyrroline-5-carboxylate
D-tagaturonate
4-deoxy-L-threo-hex-4-enopyranuronate
aldehydo-D-galacturonate
palmitate
laurate
stearate
4-hydroxybutanoate
(R)-lactate
pyruvate
formate
2-oxoglutarate
2-oxobutanoate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
3-oxoadipate
cis-aconitate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
chorismate
fumarate
succinate
(S)-malate
nicotinamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
pyrazinamide
5-amino-4-imidazolecarboxyamide
phlorisovalerophenone
α-Kdo-(2→6)-lipid IVA
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
all-trans-retinal
β-carotene
15,15'-dihydroxy-β-carotene
β-carotene 15,15' epoxide
(2E,6E)-farnesyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
geranyl diphosphate
4-prenylphlorisovalerophenone
deoxycohumulone
deoxyhumulone
(3Z,5E)-dodeca-3,5-dienoyl-CoA
5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA
2-trans-nonenoyl-CoA
4-trans-3-oxo-undecenoyl-CoA
4-cis-undecenoyl-CoA
6-cis, 3-oxo-tridecenoyl-CoA
(3E)-dec-3-enoyl-CoA
(5E)-3-oxo-dodec-5-enoyl-CoA
4-trans-undecenoyl-CoA
6-trans-3-oxo-tridecenoyl-CoA
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
geranylgeranyl diphosphate
all-trans-octaprenyl diphosphate
D-altronate
L-idonate
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
ADP-α-D-glucose
GDP-4-dehydro-α-D-rhamnose
GDP-α-D-mannose
GDP-β-L-fucose
dTDP-4-dehydro-β-L-rhamnose
dTDP-α-D-glucose
dTDP-β-L-rhamnose
dTDP-3-dehydro-6-deoxy-α-D-galactopyranose
UDP-α-D-galactofuranose
UDP-α-D-galactose
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-α-D-glucose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
α-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
D-glyceraldehyde
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-D-glucosamine
ethanol
methanol
methylglyoxal
formaldehyde
acetaldehyde
menadione
caldariellaquinone
urate
menadiol
all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol
6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol
caldariellaquinol
demethylmenaquinol-8
phenol
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
guanine
adenine
AMP
GMP
XMP
IMP
ATP
GTP
ITP
ADP
GDP
IDP
dGDP
dADP
dIDP
dATP
dGTP
dITP
dGMP
dAMP
hypoxanthine
xanthosine
guanosine
inosine
adenosine
2'-deoxyinosine
2'-deoxyguanosine
2'-deoxyadenosine
tetrahydromethanopterin
6-carboxy-5,6,7,8-tetrahydropterin
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropteroate
5,10-methylene-tetrahydromethanopterin
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
reduced riboflavin
FMNH2
riboflavin
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
uracil
preQ1
isoguanine
UDP
dTTP
CTP
dUDP
CDP
dCDP
UTP
dUMP
dUTP
dCMP
dTMP
dCTP
dTDP
UMP
CMP
uridine
cytidine
2'-deoxycytidine
2'-deoxyuridine
thymidine
cob(I)alamin
adenosylcobalamin
precorrin-2
precorrin-1
coenzyme A
(R)-lipoate
1-(5-phospho-β-D-ribosyl)-AMP
1-(5-phospho-β-D-ribosyl)-ATP
5'-deoxyadenosine
adenylo-succinate
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
cyclic-AMP
cyclic-GMP
8-oxo-GTP
8-oxo-dGTP
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
5-hydroxy-CTP
2-hydroxy-dATP
cyclic di-3',5'-guanylate
NADP+
NAD+
NADPH
NADH
5'-deoxy-5'-fluoroadenosine
(S)-NADHX
(R)-NADHX
thiamine
nicotinate
pyridoxal 5'-phosphate
pyridoxine 5'-phosphate
pyridoxamine 5'-phosphate
(+)-7-epi-jasmonate
cholest-4-en-3-one
3,22-dioxochol-4-en-24-oyl-CoA
3-oxo-4-pregnene-20-carboxyl-CoA
cholest-5-en-3-one
cholesterol
acetyl-CoA
succinyl-CoA
2-methylacetoacetyl-CoA
malonyl-CoA
4-hydroxybutanoyl-CoA
(+)-7-epi-jasmonoyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA
4-hydroxybenzoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA
3'-dephospho-CoA
3-methylglutaconyl-CoA
3-methylcrotonyl-CoA
isovaleryl-CoA
3-oxoadipyl-CoA
3-oxo-myristoyl-CoA
3-oxo-(5Z)-tetradecenoyl-CoA
3-oxo-palmitoyl-CoA
(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA
(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
3-oxohexanoyl-CoA
3-oxodecanoyl-CoA
3-oxooctanoyl-CoA
3-oxododecanoyl-CoA
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA
stearoyl-CoA
myristoyl-CoA
palmitoyl-CoA
lauroyl-CoA
octanoyl-CoA
hexanoyl-CoA
decanoyl-CoA
propanoyl-CoA
butanoyl-CoA
(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(3Z)-dodec-3-enoyl-CoA
(R)-methylmalonyl-CoA
trans-dienelactone
cis-dienelactone
glutathione
3-sulfopyruvate
L-cysteate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
agmatine
putrescine
spermidine
dehydrospermidine
2-aminoprop-2-enoate
2-iminopropanoate
(2Z)-2-aminobut-2-enoate
superoxide
hydroxyl radical
(R)-4-hydroxymandelate
(S)-4-hydroxymandelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
ω-saturated C55 dolichol phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
sn-glycerol 1-phosphate
β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)
2-chloroacetate
2-iminosuccinate
2-iminobutanoate
oxygen
uroporphyrinogen-III
coproporphyrinogen I
uroporphyrinogen-I
Mg-protoporphyrin
protoporphyrin IX
protoporphyrinogen IX
protoheme
adenosylcobinamide
cob(I)inamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)yrinate a,c-diamide
Fe3+
Mg2+
Fe2+
H+
ammonium
hydrogencarbonate
sulfite
selenide
hydrogensulfite
OH-
chloride
phosphonate
phosphate
diphosphate
triphosphate
ethylphosphate
DNA with lesion
(glutathion-S-yl)-4-hydroxy-2-nonenal
2,4-dinitrophenyl-S-glutathione
1-chloro-2,4-dinitrobenzene
preQ0