an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-ribulose 1-phosphate
3-methyl-2-oxobutanoate
H2
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
CO2
adenosine 5'-phosphoselenate
adenosine 5'-phosphosulfate
glycerone phosphate
α-D-glucosamine 1-phosphate
H2O
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1-piperideine 6-carboxylate
lipid X
lipid A disaccharide (E. coli)
lipid IVA
selenodiglutathione
glutathioselenol
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
S-ribosyl-L-homocysteine
autoinducer 2
hydrogen selenide
glutathione disulfide
2-amino-3-carboxymuconate-6-semialdehyde
mercuriphenyl acetate
dialurate
(R)-1-amino-2-propanol O-2-phosphate
D-glycero-β-D-manno-heptose 1,7-bisphosphate
D-glycero-β-D-manno-heptose 1-phosphate
acetoacetate
anthranilate
prephenate
3-deoxy-D-arabino-heptulosonate 7-phosphate
ADP-D-glycero-β-D-manno-heptose
ADP-L-glycero-β-D-manno-heptose
thiamine diphosphate
dethiobiotin
histidinal
preuroporphyrinogen
carbonic acid
(S)-dihydroorotate
acetyl phosphate
porphobilinogen
2-C-methyl-D-erythritol 4-phosphate
N-(5-phosphoribosyl)-anthranilate
histidinol
shikimate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
2-dehydropantoate
isopentenyl diphosphate
4-prenylphlorisobutyrophenone
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
7-carboxy-7-deazaguanine
α-ribazole
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
4-aminobutanoate
O-phosphoethanolamine
phosphocholine
N-methylethanolamine phosphate
N-dimethylethanolamine phosphate
S-Inosyl-L-homocysteine
quinolinate
carbon monoxide
prenyl diphosphate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
hydroxypyruvate
O-acetyl-L-serine
(S)-mandelate
(R)-mandelate
orotidine 5'-phosphate
L-β-lysine
hypotaurine
1,3-propanediol
3-hydroxypropanal
L-histidinol phosphate
butanoyl phosphate
(S)-2-amino-6-oxohexanoate
carboxynorspermidine
norspermidine
urea
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
3-hydroxypropanoate
hydrogenobyrinate a,c-diamide
(S)-3-methyl-2-oxopentanoate
5,6-dimethylbenzimidazole
α-ribazole 5'-phosphate
hydrogenobyrinate
N5-carboxyaminoimidazole ribonucleotide
glycolate
5-oxo-L-proline
hydrogen peroxide
4-amino-4-deoxychorismate
3-deoxy-α-D-manno-2-octulosonate
(R)-4'-phosphopantothenoyl-L-cysteine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
3-deoxy-D-manno-octulosonate 8-phosphate
3-dehydroquinate
3-dehydroshikimate
DNA without lesion
(R)-2,3-dihydroxy-3-methylpentanoate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
coproporphyrinogen III
γ-L-glutamyl 5-phosphate
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
3-ureidopropanoate
4-phosphooxy-L-threonine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
selenophosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
2-iminoacetate
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
coenzyme B
methanophenazine
CoB-CoM heterodisulfide
dihydromethanophenazine
propanoyl phosphate
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
xanthine
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
N-acetyl-L-glutamate 5-semialdehyde
8-amino-7-oxononanoate
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
7,8-diaminopelargonate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
citrate
oxaloacetate
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
O-ureido-L-homoserine
L-arginino-succinate
canavaninosuccinate
L-canavanine
4'-phosphopantetheine
N-acetylglutamyl-phosphate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropylmalate
(R)-pantothenate
(R)-4'-phosphopantothenate
phosphoenolpyruvate
oxalosuccinate
carbamoyl phosphate
carboxyphosphate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
2-iminobutanoate
2-iminosuccinate
2-iminopropanoate
2-octaprenylphenol
4-methylphenol
L-homocysteine
sn-glycerol 3-phosphate
sn-glycerol 1-phosphate
DNA with lesion
phenylacetate
ethylphosphate
adenosylcobalamin
cob(I)alamin
cobalt-factor III
cobalt-precorrin-3
cobalt-precorrin-7
cobalt-precorrin-8
cobalt-precorrin-6B
adenosylcobyrate
adenosyl-cobinamide phosphate
Mg-protoporphyrin
cobalt-precorrin-4
cobalt-precorrin-5A
cobalt-precorrin-5B
cobalt-precorrin-6A
adenosylcobinamide-GDP
adenosylcobalamin 5'-phosphate
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
cob(I)yrinate a,c-diamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)inamide
adenosylcobinamide
cobalt-sirohydrochlorin
cobalt-precorrin-2
protoheme
uroporphyrinogen-I
protoporphyrin IX
uroporphyrinogen-III
protoporphyrinogen IX
siroheme
oxygen
hydrogen sulfide
Hg0
2-chloroacetate
3-phospho-D-glyceroyl-phosphate
(R)-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
(2R)-2,3-dihydroxy-3-methylbutanoate
(S)-4-hydroxymandelate
(R)-4-hydroxymandelate
preQ0
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
Fe3+
H+
ammonium
Mo2+
Zn2+
Mg2+
Hg2+
Fe2+
Co2+
selenate
molybdate
sulfate
hydrogensulfite
selenite
OH-
superoxide
selenide
sulfite
hydrogencarbonate
chloride
phosphonate
phosphate
diphosphate
triphosphate
hydroxyl radical
(2E,6E)-farnesyl diphosphate
pristanate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
glycine betaine
betaine aldehyde
choline
betaine aldehyde hydrate
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
agmatine
putrescine
S-(hydroxymethyl)glutathione
glutathione
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
taurine
sulfoacetaldehyde
2-sulfinoacetaldehyde
coenzyme M
L-cysteate
3-sulfopyruvate
isobutanoyl-CoA
acetyl-CoA
succinyl-CoA
3-hydroxypropanoyl-CoA
phenylacetyl-CoA
malonyl-CoA
α-linolenoyl-CoA
linoleoyl-CoA
3'-dephospho-CoA
phytenoyl-CoA
oleoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
7-hydroxylauroyl-CoA
18-hydroxystearoyl-CoA
16-hydroxypalmitoyl-CoA
18-hydroxyoleoyl-CoA
(Z)-15-tetracosenoyl-CoA
propanoyl-CoA
octanoyl-CoA
lauroyl-CoA
decanoyl-CoA
stearoyl-CoA
palmitoyl-CoA
pristanoyl-CoA
acetoacetyl-CoA
(25S)-3-oxocholest-4-en-26-oate
(25S)-3-oxocholest-4-en-26-oyl-CoA
nicotinate
riboflavin
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxal 5'-phosphate
pyridoxine 5'-phosphate
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADH
NADPH
NAD+
NADP+
caldariellaquinone
caldariellaquinol
dADP
dATP
IDP
ITP
dIDP
dITP
dGDP
dGTP
GDP
GTP
ADP
ATP
AMP
isoguanine
8-oxo-dGTP
8-oxo-GTP
1-(5-phospho-β-D-ribosyl)-AMP
1-(5-phospho-β-D-ribosyl)-ATP
cyclic-AMP
5'-deoxyadenosine
pppGpp
ppGpp
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
hypoxanthine
GMP
XMP
IMP
adenylo-succinate
xanthosine
guanosine
inosine
adenosine
cytidine
uridine
2'-deoxycytidine
2'-deoxyuridine
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CTP
5-hydroxy-CMP
dTTP
dCTP
dUTP
UTP
CTP
dCMP
dUMP
dTMP
CMP
UMP
dTDP
dCDP
dUDP
UDP
CDP
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
GDP-α-D-mannose
GDP-α-D-mannuronate
GDP-α-D-glucose
ADP-α-D-glucose
preQ1
thymine
uracil
adenine
guanine
5,6-dihydrouracil
5,6-dihydrothymine
CMP-3-deoxy-β-D-manno-octulosonate
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
coenzyme A
MoO2-molybdopterin cofactor
thio-molybdenum cofactor
(S)-1-pyrroline-5-carboxylate
precorrin-3A
precorrin-8x
precorrin-1
precorrin-2
precorrin-3B
precorrin-4
sirohydrochlorin
hydantoin
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
6-carboxy-5,6,7,8-tetrahydropterin
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
orotate
benzene
futalosine
dehypoxanthine futalosine
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
protocatechuate
4-aminobenzoate
diacetyl
methylglyoxal
formaldehyde
acetaldehyde
D-glyceraldehyde
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
β-D-ribopyranose
β-D-allofuranose
β-D-allopyranose
methanol
ethanol
glycerol
myo-inositol
1D-myo-inositol 4-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 2-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 5-monophosphate
1D-myo-inositol 3-monophosphate
maltotriose
maltotetraose
maltoheptaose
maltohexaose
maltopentaose
α,α-trehalose
N-acetyl-α-D-glucosamine 1-phosphate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α,α-trehalose 6-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
4-phospho-D-erythronate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-arabinofuranose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
18-hydroxystearate
16-hydroxypalmitate
18-hydroxyoleate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
geranyl diphosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
geranylgeranyl diphosphate
3-octaprenyl-4-hydroxybenzoate
phlorisovalerophenone
deoxyhumulone
deoxycohumulone
4-prenylphlorisovalerophenone
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
chorismate
succinate
fumarate
L-aspartate
(S)-malate
α,ω-9Z-octadecenedioate
3-(carbamoylamino)-2-methylpropanoate
3-carboxy-cis,cis-muconate
cis-aconitate
D-threo-isocitrate
3-oxoadipate
3-phenyl-2-oxopropanoate
pyruvate
2-oxoglutarate
2-oxobutanoate
glyoxylate
acetate
formate
propanoate
butanoate
octanoate
7-hydroxylaurate
laurate
decanoate
(15Z)-tetracosenoate
oleate
α-linolenate
linoleate
stearate
palmitate
phytenate
(R)-pantoate
carbamate
L-serine
L-glutamine
glycine
L-cysteine
L-threonine
L-asparagine
L-tyrosine
L-arginine
L-histidine
L-lysine
L-glutamate
L-isoleucine
L-leucine
L-methionine
L-valine
L-proline
L-tryptophan
L-phenylalanine
L-alanine
(R)-β-lysine
β-alanine
(R)-3-amino-2-methylpropanoate
D-glutamate
D-alanine
L-ornithine
L,L-diaminopimelate
L-aspartyl-4-phosphate
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
L-saccharopine
N-carbamoylglycine
N-acetyl-L-methionine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
L-citrulline
L-homoserine
L-canaline
O-phospho-L-homoserine
L-glutamate-5-semialdehyde
L-aspartate 4-semialdehyde
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
meso-diaminopimelate
D-alanyl-D-alanine