an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

selenodiglutathione

glutathioselenol

2-keto-L-gulonate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

pyruvic oxime

(2Z)-2-(acetamidomethylene)succinate

3-hydroxy-2-methylpyridine-5-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

S-ribosyl-L-homocysteine

autoinducer 2

(4S)-4-hydroxy-2-oxoheptanedioate

5-carboxymethyl-2-hydroxymuconate

2-hydroxy-5-carboxymethylmuconate semialdehyde

hydrogen selenide

(R)-synephrine

octopamine

3-hydroxypropanoate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

protoanemonin

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

methyloxaloacetate

mercuriphenyl acetate

2-dehydro-3-deoxy-D-gluconate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

chloramphenicol

4-amino-2-methyl-5-pyrimidinemethanol

2-iminoacetate

N-Formyl-L-kynurenine

acetyl phosphate

4-(γ-L-glutamylamino)butanoate

preuroporphyrinogen

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

D-erythro-imidazole-glycerol-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

5-methylsalicylate

4-methylsalicylate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-deoxy-α-D-manno-2-octulosonate

5-dehydro-D-gluconate

N-ethylmaleimide

N-ethylsuccinimide

5-dehydro-2-deoxy-D-gluconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

α-ribazole

(2S)-4-acetamido-2-aminobutanoate

ectoine

isoquinoline

isoquinolin-2(1H)-one

(S)-2-amino-6-oxohexanoate

N-succinyl-L,L-2,6-diaminopimelate

citraconate

(2R,3S)-3-methylmalate

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

tryptamine

5-hydroxyindole acetaldehyde

3,4-dihydroxyphenylacetaldehyde

methylamine

4-acetamidobutanal

5-methoxytryptamine

5-methoxyindoleacetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-enolpyruvoyl-shikimate 3-phosphate

tartronate semialdehyde

lipid IV_A

O-acetyl-L-serine

(4-hydroxyphenyl)acetate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

coproporphyrinogen III

(S)-mandelate

(R)-mandelate

D-gluconate 6-phosphate

S-formylglutathione

5-oxo-L-proline

carboxyphosphate

N-acetyl-D-muramate 6-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-protocatechuoylphloroglucinolcarboxylate

carbon monoxide

2-maleylacetate

(S)-5-amino-3-oxohexanoate

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

3-hydroxyanthranilate

2-amino-3-carboxymuconate-6-semialdehyde

phosphocholine

2-dehydro-3-deoxy-L-rhamnonate

2,5-dioxopentanoate

5-dehydro-4-deoxy-D-glucarate

4-pyridoxolactone

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

ammonia

hydroxylamine

pimeloyl-CoA

8-amino-7-oxononanoate

3-phosphonopyruvate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

6-deoxyerythronolide B

hydroxypyruvate

butyramide

creatinine

(2-hydroxyphenyl)acetate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

porphobilinogen

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

propanoyl phosphate

N²-succinylglutamate

carbonic acid

DNA without lesion

phosphonoacetate

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

3-deoxy-D-manno-octulosonate 8-phosphate

β-D-ribosylnicotinate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

glycerone phosphate

N-(5-phosphoribosyl)-anthranilate

lipid X

lipid A disaccharide (E. coli)

1,6-anhydro-N-acetyl-β-muramate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

glutathione disulfide

2-phosphoglycolate

orotidine 5'-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

4-fumaryl-acetoacetate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

S-adenosyl 3-(methylsulfanyl)propylamine

ethanolamine

(R)-pantothenate

4-hydroxy-2-nonenal

2-keto-D-gluconate

2,5-didehydro-D-gluconate

glycolate

(lipoyl)adenylate

xanthine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

O-ureido-L-homoserine

imidazole acetol-phosphate

L-histidinol phosphate

N-acetylglutamyl-phosphate

shikimate

shikimate 3-phosphate

L-arginino-succinate

canavaninosuccinate

L-canavanine

urea

homogentisate

4-maleyl-acetoacetate

5-methylcytosine

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

4-imidazolone-5-propanoate

urocanate

(S)-ureidoglycolate

γ-L-glutamyl 5-phosphate

2-dehydropantoate

prephenate

histidinal

histidinol

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3-mercaptopyruvate

anthranilate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

5-aminolevulinate

acetoacetate

N-acetyl-L-glutamate 5-semialdehyde

β-nicotinate D-ribonucleotide

quinolinate

hydrogen peroxide

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

oxalosuccinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(2S)-2-isopropylmalate

4-methyl-2-oxopentanoate

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

N-carbamoylputrescine

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

α-D-glucosamine 1-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

phosphoenolpyruvate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

oxaloacetate

citrate

5-phospho-β-D-ribosylamine

3-ureidopropanoate

L-selenocystathionine

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

CO₂

nicotinate adenine dinucleotide

3-dehydroquinate

3-dehydroshikimate

carbamoyl phosphate

H₂O

(S)-dihydroorotate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

5-hydroxyindole thiazolidine carboxylate

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

4-oxoglutaramate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

phenylacetate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-sirohydrochlorin

cobalt-precorrin-2

adenosylcobalamin 5'-phosphate

3-deacetyl-3-(1-hydroxyethyl)bacteriochlorophyllide a

bacteriochlorophyllide a

3,8-divinyl chlorophyllide a

3,8-divinyl protochlorophyllide a

Mg-protoporphyrin

chlorophyllide a

protochlorophyllide a

cob(I)yrinate a,c-diamide

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

protoheme

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

protoporphyrin IX

siroheme

Hg⁰

oxygen

hydrogen sulfide

4-(2-iminoethyl)phenol

4-[(2Z)-2-(methylimino)ethyl]phenol

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

CMP-N-acetyl-β-neuraminate

(R)-citramalate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

preQ₀

3-cyanopyridine

propionitrile

acrylonitrile

(indole-3-yl)acetonitrile

n-butyronitrile

chloramphenicol 3-acetate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

3-chloro-cis,cis-muconate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

4-chlorosalicylate

5-chlorosalicylate

4-chlorocatechol

Fe³⁺

H⁺

ammonium

Hg²⁺

Co²⁺

Mg²⁺

Fe²⁺

Mn²⁺

Zn²⁺

Mo²⁺

selenite

molybdate

OH^-

nitrite

superoxide

thiosulfate

sulfite

selenate

hydrogencarbonate

nitrate

sulfate

hydrogensulfite

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

glycine betaine

betaine aldehyde hydrate

betaine aldehyde

choline

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

4-aminobutanal

N-acetylputrescine

putrescine

spermidine

tyramine

2-phenylethylamine

serotonin

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

S-(hydroxymethyl)glutathione

glutathione

thiocyanate

methanethiol

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

erythronolide B

3-α-mycarosylerythronolide B

erythromycin D

cis-dienelactone

trans-dienelactone

2-methylbutanoyl-CoA

3-hydroxypropanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

anthraniloyl-CoA

salicyl-CoA

gentisyl-CoA

(S)-3-aminobutanoyl-CoA

acryloyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

4-hydroxybenzoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

phenylacetyl-CoA

3-methylglutaconyl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

acetyl-CoA

malonyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

phytanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

butanoyl-CoA

propanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

octanoyl-CoA

lauroyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxooctadecanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

methane

cholest-4-en-3-one

cholest-dien-3-one

3-oxo-23,24-bisnorchol-1,4-dien-22-yl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

glycocholate

cholate

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

(+)-7-epi-jasmonate

(indol-3-yl)acetate

thiamine

nicotinamide

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

4-pyridoxate

pyridoxine

pyridoxamine

pyridoxal

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

menadione

FMN

FMNH₂

FAD

FADH₂

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinone

caldariellaquinol

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

pppGpp

ppGpp

cyclic-AMP

2'-deoxyinosine

2'-deoxyguanosine

hypoxanthine

2'-deoxyadenosine

GMP

5'-deoxyadenosine

adenylo-succinate

dADP

dATP

IDP

ITP

dIDP

dITP

dGDP

dGTP

GDP

GTP

IMP

XMP

AMP

ATP

ADP

isoguanine

8-oxo-dGTP

8-oxo-GTP

5-fluorocytosine

5-fluorouracil

guanosine

inosine

xanthosine

adenosine

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

cyclic di-3',5'-guanylate

5-hydroxy-CTP

5-hydroxy-CMP

2-hydroxy-dATP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dCDP

dUDP

UDP

CDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-glucose

GDP-α-D-mannose

ADP-α-D-glucose

preQ₁

cytosine

uracil

thymine

guanine

adenine

5,6-dihydrothymine

5,6-dihydrouracil

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-D-desosamine

dTDP-β-L-mycarose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

molybdopterin

(R)-lipoate

coenzyme A

thio-molybdenum cofactor

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-6A

precorrin-3B

precorrin-1

precorrin-4

precorrin-5

precorrin-3A

precorrin-6B

precorrin-7

precorrin-8x

precorrin-2

sirohydrochlorin

hydantoin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

cyclic pyranopterin phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

quercetin

benzene

3-hexaprenyl-4-hydroxybenzoate

7,8-dihydro-8-oxoguanine

urate

4-hydroxybenzoate

metanephrine

normetanephrine

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

catechol

4-methylcatechol

dopamine

(R)-adrenaline

(R)-noradrenaline

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetate

protocatechuate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

salicylate

4-aminobenzoate

diacetyl

methylglyoxal

glycolaldehyde

formaldehyde

acetaldehyde

(S)-lactaldehyde

D-glyceraldehyde

α-D-ribofuranose

methanol

ethanol

glycerol

D-arabinitol

D-sorbitol

L-iditol

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

scyllo-inosose

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

α,α-trehalose

keto-D-fructose

keto-L-sorbose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

β-D-fructofuranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^G-phosphate

α,α-trehalose 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-idonate

D-gluconate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

phytyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

chorismate

fumarate

succinate

L-aspartate

(S)-malate

D-galactarate

α,ω-9Z-octadecenedioate

3-(carbamoylamino)-2-methylpropanoate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

3-carboxy-cis,cis-muconate

cis-aconitate

(2R,3S)-2-methylisocitrate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

acetate

formate

propanoate

(R)-lactate

decanoate

7-hydroxylaurate

laurate

octanoate

gentisate

(R)-3-hydroxybutanoate

(15Z)-tetracosenoate

linoleate

α-linolenate

stearate

palmitate

oleate

phytenate

(R)-pantoate

5-deoxy-D-glucuronate

L-kynurenine

carbamate

L-α-amino-ε-keto-pimelate

L-serine

L-asparagine

L-tyrosine

L-threonine

glycine

L-glutamine

L-cysteine

L-arginine

L-histidine

L-lysine

L-glutamate

L-tryptophan

L-phenylalanine

L-valine

L-isoleucine

L-leucine

L-alanine

L-proline

L-methionine

creatine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

D-glutamate

cis-4-hydroxy-D-proline

D-alanine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-2,4-diaminobutanoate

L-ornithine

L-cystathionine

L-isoglutamine

N-carbamoyl-L-aspartate

N-formyl-L-glutamate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

L-saccharopine

seleno-L-homocysteine

3-phospho-L-serine

S-methyl-L-cysteine

(2S, 3S)-3-methylaspartate

sarcosine

N-carbamoylglycine

N-acetyl-L-methionine

N-acetyl-L-glutamate

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

L-proline betaine

D-proline betaine

N-methyl-L-proline

O-acetyl-L-homoserine

L-citrulline

O-succinyl-L-homoserine

hypoglycin A

L-canaline

1-aminocyclopropane-1-carboxylate

S-adenosyl-L-methionine

L-homoserine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine