an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
enol-phenylpyruvate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
ammonia
3-dehydroshikimate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
urea
(R)-4'-phosphopantothenate
lipid X
S-ribosyl-L-homocysteine
autoinducer 2
thiamine diphosphate
selenodiglutathione
glutathioselenol
hydrogen selenide
glutathione disulfide
3'-phosphoadenylyl-sulfate
3-dehydroquinate
DNA without lesion
adenosine 5'-phosphoselenate
prephenate
(indol-3-yl)pyruvate
(indol-3 yl)acetyl-CoA
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
O-phosphoethanolamine
N-methylethanolamine phosphate
N-dimethylethanolamine phosphate
phosphocholine
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
carbon monoxide
S-methyl-5'-thioadenosine
3-deoxy-D-arabino-heptulosonate 7-phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
glycolate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
(S)-dihydroorotate
orotidine 5'-phosphate
lipid A disaccharide (E. coli)
xanthine
D-glycero-β-D-manno-heptose 1,7-bisphosphate
D-glycero-β-D-manno-heptose 1-phosphate
(R)-pantothenate
CDP-glycerol
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-ribulose 1-phosphate
3-deoxy-α-D-manno-2-octulosonate
3-deoxy-D-manno-octulosonate 8-phosphate
preuroporphyrinogen
histidinal
histidinol
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
S-adenosyl 3-(methylsulfanyl)propylamine
coenzyme B
CoB-CoM heterodisulfide
methanophenazine
dihydromethanophenazine
1-deoxy-L-glycero-tetrulose 4-phosphate
quinolinate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate
shikimate 3-phosphate
α-D-ribose 1,5-bisphosphate
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
3-hydroxypropanoate
3-phosphooxypyruvate
5-amino-6-(D-ribitylamino)uracil
creatinine
O-ureido-L-homoserine
porphobilinogen
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
2-dehydropantoate
lipid IVA
ADP-D-glycero-β-D-manno-heptose
ADP-L-glycero-β-D-manno-heptose
hydrogenobyrinate
hydrogenobyrinate a,c-diamide
coproporphyrinogen III
D-erythro-imidazole-glycerol-phosphate
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
4-phosphooxy-L-threonine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
selenophosphate
propanoyl phosphate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
7-carboxy-7-deazaguanine
N-(5-phosphoribosyl)-anthranilate
adenosine 5'-phosphosulfate
β-nicotinate D-ribonucleotide
β-D-ribosylnicotinate
γ-L-glutamyl 5-phosphate
carbamoyl phosphate
carboxyphosphate
anthranilate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
glycerone phosphate
oxalosuccinate
citrate
phosphoenolpyruvate
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
4'-phosphopantetheine
oxaloacetate
H2
3-methyl-2-oxobutanoate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
imidazole acetol-phosphate
L-histidinol phosphate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
CO2
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
hydrogen peroxide
canavaninosuccinate
L-canavanine
L-arginino-succinate
H2O
DNA with lesion
L-homocysteine
phenylacetate
Mg-protoporphyrin
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
protoheme
uroporphyrinogen-I
protoporphyrin IX
uroporphyrinogen-III
protoporphyrinogen IX
siroheme
oxygen
2-iminobutanoate
2-iminosuccinate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2R)-2,3-dihydroxy-3-methylbutanoate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
FAD
FMNH2
FMN
(S)-NADHX
(R)-NADHX
NADH
NADPH
NAD+
NADP+
pristanate
H+
ammonium
Mg2+
Fe2+
selenide
selenite
selenate
sulfite
hydrogencarbonate
sulfate
phosphate
triphosphate
diphosphate
S-(hydroxymethyl)glutathione
glutathione
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
coenzyme M
L-cysteate
3-sulfopyruvate
(R)-S-lactoylglutathione
(2Z)-2-aminobut-2-enoate
putrescine
spermidine
spermine
D-alanyl-D-alanine
urate
3-hexaprenyl-4-hydroxybenzoate
4-hydroxybenzoate
menadiol
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
preQ0
tetrahydrosarcinapterin
5-methyl-tetrahydrosarcinapterin
coenzyme A
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
riboflavin
menadione
(25S)-3-oxocholest-4-en-26-oate
(25S)-3-oxocholest-4-en-26-oyl-CoA
malonyl-CoA
α-linolenoyl-CoA
linoleoyl-CoA
phenylacetyl-CoA
3-hydroxypropanoyl-CoA
acetyl-CoA
isobutanoyl-CoA
3'-dephospho-CoA
phytenoyl-CoA
oleoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
7-hydroxylauroyl-CoA
18-hydroxyoleoyl-CoA
18-hydroxystearoyl-CoA
16-hydroxypalmitoyl-CoA
(Z)-15-tetracosenoyl-CoA
propanoyl-CoA
octanoyl-CoA
lauroyl-CoA
decanoyl-CoA
pristanoyl-CoA
stearoyl-CoA
palmitoyl-CoA
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
chorismate
succinate
L-aspartate
fumarate
(S)-malate
α,ω-9Z-octadecenedioate
cis-aconitate
D-threo-isocitrate
pyruvate
acetate
formate
(R)-lactate
octanoate
laurate
decanoate
7-hydroxylaurate
18-hydroxyoleate
18-hydroxystearate
16-hydroxypalmitate
(15Z)-tetracosenoate
oleate
α-linolenate
linoleate
stearate
palmitate
phytenate
orotate
(R)-pantoate
(S)-1-pyrroline-5-carboxylate
carbamate
L-serine
creatine
β-alanine
L-proline
L-leucine
L-alanine
glycine
L-glutamine
D-glutamate
L-glutamate
L-histidine
L-lysine
L-arginine
L-tyrosine
L-tryptophan
L-phenylalanine
D-alanine
L-aspartyl-4-phosphate
3-phospho-L-serine
sarcosine
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
L,L-diaminopimelate
L-valine
L-ornithine
L-isoleucine
L-threonine
L-methionine
L-citrulline
L-canaline
L-homoserine
S-adenosyl-L-homocysteine
L-glutamate-5-semialdehyde
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
O-phospho-L-homoserine
meso-diaminopimelate
3-phenyl-2-oxopropanoate
glyoxylate
2-oxobutanoate
2-oxoglutarate
1D-myo-inositol 3-monophosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
all-trans-nonaprenyl diphosphate
all-trans-hexaprenyl diphosphate
all-trans-decaprenyl diphosphate
all-trans-heptaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
3-nonaprenyl-4-hydroxybenzoate
3-decaprenyl-4-hydroxybenzoate
3-heptaprenyl-4-hydroxybenzoate
α-Kdo-(2→6)-lipid IVA
1-(β-D ribofuranosyl)nicotinamide
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (S. aureus)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
D-ribulose-1,5-bisphosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
UDP-α-D-glucose
CDP-α-D-glucose
dTDP-α-D-glucose
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-muramate
UDP-α-D-galactose
UDP-α-D-glucuronate
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-arabinofuranose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
diacetyl
formaldehyde
acetaldehyde
precorrin-2
precorrin-1
sirohydrochlorin
dTMP
uracil
dUMP
dTDP
dCDP
CDP
dUDP
UDP
dTTP
dUTP
dCTP
UTP
CTP
CMP
UMP
uridine
cytidine
adenine
hypoxanthine
guanine
preQ1
inosine
adenosine
guanosine
xanthosine
2'-deoxyguanosine
2'-deoxyadenosine
2'-deoxyinosine
ITP
GTP
ATP
IDP
GDP
ADP
IMP
XMP
GMP
AMP
dITP
dATP
dGTP
dIDP
dGDP
dADP
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
7,8-dihydroneopterin 3'-triphosphate
6-carboxy-5,6,7,8-tetrahydropterin
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
pppGpp
ppGpp
adenylo-succinate
5'-deoxyadenosine
cyclic di-3',5'-guanylate
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA