an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

glutathione disulfide

urea

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

(S)-2-amino-6-oxohexanoate

norspermidine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

H₂

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

O-acetyl-L-serine

S-ribosyl-L-homocysteine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

3-phosphooxypyruvate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

5-enolpyruvoyl-shikimate 3-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(S)-2,3,4,5-tetrahydrodipicolinate

2-oxovalerate

carboxynorspermidine

DNA without lesion

2-dehydro-3-deoxy-D-gluconate

O-ureido-L-homoserine

α-D-glucosamine 1-phosphate

4-methyl-2-oxopentanoate

shikimate 3-phosphate

phloretin

phloroglucinol

(4,5-dihydro-5-oxofuran-2-yl)-acetate

L-arginino-succinate

canavaninosuccinate

(R)-4'-phosphopantothenoyl-L-cysteine

3-deoxy-D-arabino-heptulosonate 7-phosphate

2-phosphoglycolate

acetyl phosphate

propanoyl phosphate

histidinal

histidinol

D-erythro-imidazole-glycerol-phosphate

xanthine

1,2-dihydro-β-NADP

phloretate

(R)-pantothenate

2-dehydropantoate

(indol-3-yl)pyruvate

1-piperideine 6-carboxylate

coproporphyrinogen III

L-selenocystathionine

thiamine phosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

orotidine 5'-phosphate

chloramphenicol

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N²-succinylglutamate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

6-phospho D-glucono-1,5-lactone

3-dehydroquinate

glycolate

2-iminoacetate

nicotinate adenine dinucleotide

N-(5-phosphoribosyl)-anthranilate

anthranilate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

N-carbamoylputrescine

hydrogen peroxide

β-nicotinate D-ribonucleotide

quinolinate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

carbamoyl phosphate

carboxyphosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

5-amino-6-(D-ribitylamino)uracil

imidazole acetol-phosphate

L-histidinol phosphate

oxaloacetate

citrate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

prenyl diphosphate

D-gluconate 6-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

3-deoxy-D-glycero-2,5-hexodiulosonate

5-dehydro-D-gluconate

glycerone phosphate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

oxalosuccinate

CO₂

phosphoenolpyruvate

prephenate

(4-hydroxyphenyl)acetate

(R)-4'-phosphopantothenate

thiamine diphosphate

salicyl alcohol

γ-L-glutamyl 5-phosphate

shikimate

autoinducer 2

4'-phosphopantetheine

3-dehydroshikimate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

L-canavanine

H₂O

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(S)-dihydroorotate

DNA with lesion

L-homocysteine

4-methylphenol

adenosylcobalamin

cob(I)alamin

cob(I)yrinate a,c-diamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobinamide

Mg-protoporphyrin

protoheme

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

oxygen

hydrogen sulfide

2-iminopropanoate

2-iminosuccinate

2-iminobutanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

preQ₀

chloramphenicol 3-acetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

Fe³⁺

H⁺

ammonium

Zn²⁺

Co²⁺

Mg²⁺

Fe²⁺

nitrate

hydrogencarbonate

OH^-

superoxide

phosphate

diphosphate

triphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

spermidine

putrescine

glutathione

methanethiol

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

3-sulfopyruvate

L-cysteate

succinyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

malonyl-CoA

acetyl-CoA

3'-dephospho-CoA

crotonyl-CoA

propanoyl-CoA

palmitoyl-CoA

ethene

thiamine

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxal 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

adenylo-succinate

isoguanine

8-oxo-dGTP

8-oxo-GTP

cyclic-AMP

GMP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

IMP

5'-deoxyadenosine

dATP

dADP

dGTP

dGDP

GTP

GDP

ADP

ATP

AMP

hypoxanthine

XMP

guanosine

inosine

adenosine

xanthosine

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

ADP-α-D-glucose

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

preQ₁

uracil

thymine

guanine

adenine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

UMP

CMP

dCDP

dTDP

CDP

UDP

coenzyme A

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

ethanol

methanol

butan-1-ol

glycerol

(S)-propane-1,2-diol

hydroquinone

protocatechuate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

chorismate

succinate

L-aspartate

fumarate

(S)-malate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

acetate

formate

(R)-lactate

(R)-2-hydroxybutanoate

sophorosyloxydocosanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

palmitate

(R)-pantoate

D-mannonate

D-gluconate

4-deoxy-L-threo-hex-4-enopyranuronate

D-tagaturonate

aldehydo-D-galacturonate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-cysteine

L-tyrosine

L-glutamine

L-threonine

glycine

L-arginine

L-lysine

L-histidine

L-glutamate

L-isoleucine

L-leucine

L-alanine

L-tryptophan

L-valine

L-proline

L-phenylalanine

L-methionine

β-alanine

D-glutamate

D-alanine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-ornithine

L-cystathionine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

seleno-L-homocysteine

L-saccharopine

3-phospho-L-serine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-canaline

O-phospho-L-homoserine

L-homoserine

O-succinyl-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

meso-diaminopimelate

5-dehydro-4-deoxy-D-glucuronate

unsaturated gellan tetrasaccharide

maltotriose

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

keto-D-fructose

N-acetyl-α-D-glucosamine 1-phosphate

D-xylulose

α-L-rhamnopyranose

β-L-rhamnopyranose

α-D-galactopyranose

β-D-fructofuranose

D-glyceraldehyde

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-altronate

L-idonate

D-alanyl-D-alanine

iron(III) dicitrate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

diacetyl

methylglyoxal

formaldehyde

acetaldehyde

butan-1-al

(S)-lactaldehyde