an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

5-guanidino-2-oxopentanoate

ammonia

(S)-2-amino-6-oxohexanoate

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

1,2-dichloroethane

2-chloroethanol

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

citrate

nicotinate adenine dinucleotide

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

quinolinate

carboxyphosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

salicyl alcohol

methylsalicylate

arsenite

(2E)-hexadecenal

prop-2-ynal

propynoate

imidazole acetaldehyde

4-imidazoleacetate

3,4-dihydroxyphenylacetaldehyde

4-acetamidobutanal

4-acetamidobutanoate

dimethylsulfoniopropanoate

D-glucurono-6,3-lactone

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

palmitaldehyde

3-dehydroquinate

3-dehydroshikimate

(R)-mevalonate diphosphate

isopentenyl diphosphate

(R)-5-phosphomevalonate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N-(5-phosphoribosyl)-anthranilate

4-amino-4-deoxychorismate

anthranilate

carbonic acid

(2-hydroxyphenyl)acetate

homogentisate

N-Formyl-L-kynurenine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

α-D-glucosamine 1-phosphate

3-hydroxyanthranilate

2-amino-3-carboxymuconate-6-semialdehyde

2-hydroxy-5-carboxymethylmuconate semialdehyde

5-carboxymethyl-2-hydroxymuconate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

(S)-2,3,4,5-tetrahydrodipicolinate

succinate semialdehyde

hydrogen peroxide

(S)-dihydroorotate

acetoacetate

urocanate

formamide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

poly (glycerol phosphate)

o-(α-D-glucosyl)-polyglycerol phosphate

3-phosphooxypyruvate

phosphoenolpyruvate

O-acetyl-L-serine

oxaloacetate

glycerone phosphate

γ-L-glutamyl 5-phosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

lipid X

lipid A disaccharide (E. coli)

(R)-mevalonate

(R)-pantothenate

(R)-4'-phosphopantothenate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

O-ureido-L-homoserine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

N-acetyl-L-glutamate 5-semialdehyde

carbamoyl phosphate

N-acetylglutamyl-phosphate

canavaninosuccinate

L-canavanine

L-arginino-succinate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

xanthine

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

CO₂

(4,5-dihydro-5-oxofuran-2-yl)-acetate

ethanolamine

H₂O

pseudouridine 5'-phosphate

4'-phosphopantetheine

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

(3E)-2-oxopent-3-enoate

1,2-dihydro-β-NADP

enol-phenylpyruvate

4-oxoglutaramate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2E)-2-hydroxypenta-2,4-dienoate

5-hydroxyindole thiazolidine carboxylate

aminoacetone

pseudouridine

selenodiglutathione

glutathioselenol

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

(R)-synephrine

(4-hydroxyphenyl)acetate

octopamine

chloroacetaldehyde

urea

S-ribosyl-L-homocysteine

autoinducer 2

(S)-mandelate

(R)-mandelate

2-dehydropantoate

urea-1-carboxylate

(7R)-7-(4-carboxybutanamido)cephalosporanate

glutarate

(lipoyl)adenylate

glutathione disulfide

CDP-glycerol

N⁵-carboxyaminoimidazole ribonucleotide

2-maleylacetate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

pregn-5-ene-3,20-dione-17-ol

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

pregn-5-ene-3,20-dione

5-androstene-3,17-dione

D-galacto-hexodialdose

chloramphenicol

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

lipid IV_A

methylamine

5-methoxytryptamine

5-methoxyindoleacetaldehyde

DNA without lesion

β-D-galactosyl-(1→4)-N-acetyl-D-glucosamine

2,6-dioxo-6-phenylhexa-3-enoate

2-oxopent-4-enoate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-imidazolone-5-propanoate

D-gluconate 6-phosphate

orotidine 5'-phosphate

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

histidinal

L-histidinol phosphate

histidinol

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

acetyl phosphate

4-fumaryl-acetoacetate

oxalosuccinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

1,4-dihydroxy-2-naphthoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

isochorismate

hydrogen selenide

hydroxypyruvate

prenyl diphosphate

preuroporphyrinogen

coproporphyrinogen III

5-aminolevulinate

porphobilinogen

2-dehydro-3-deoxy-D-gluconate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

shikimate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

L-arogenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

prephenate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

tryptamine

2-phosphoglycolate

glycolate

dimethylamine

DNA with lesion

L-homocysteine

phenylacetate

ethylphosphate

hydrogen cyanide

Mg-protoporphyrin

protoheme

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

siroheme

oxygen

hydrogen sulfide

2-iminopropanoate

2-iminobutanoate

4-(2-iminoethyl)phenol

4-[(2Z)-2-(methylimino)ethyl]phenol

2-chloroacetate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

CMP-N-acetyl-β-neuraminate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

ethene

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2,5-dichlorophenol

2-imino-3-(indol-3-yl)propanoate

chloramphenicol 3-acetate

FMN

FAD

FADH₂

(R)-NADHX

(S)-NADHX

caldariellaquinol

menaquinol-12

menaquinol-9

menaquinol-10

menaquinol-11

menaquinol-7

menaquinol-8

menaquinol-6

menaquinol-13

demethylmenaquinol-12

demethylmenaquinol-9

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-7

demethylmenaquinol-8

demethylmenaquinol-6

demethylmenaquinol-13

caldariellaquinone

NADPH

NADH

NADP⁺

NAD⁺

hydroxyl radical

superoxide

(2E,6E)-farnesyl diphosphate

pristanate

N-acetyl-β-neuraminate

Fe³⁺

H⁺

ammonium

Cd²⁺

Zn²⁺

Cu²⁺

Fe²⁺

Mg²⁺

nitrite

hydrogencarbonate

selenate

hydrogensulfite

sulfate

selenite

OH^-

selenide

thiosulfate

sulfite

phosphate

diphosphate

triphosphate

chloride

3-dimethylsulfoniopropionaldehyde

S-(hydroxymethyl)glutathione

methanethiol

thiocyanate

glutathione

S-sulfanylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

N-acetylputrescine

dehydrospermidine

spermidine

2-phenylethylamine

tyramine

serotonin

cyanophycin primer

cyanophycin primer-L-aspartate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-D-glutamate

glycyl-L-asparagine

L-alanyl-L-leucine

L-alanyl-L-glutamine

glycyl-L-aspartate

glycyl-L-glutamine

L-alanyl-L-threonine

L-cysteinylglycine

L-alanyl-glycine

glycyl-L-methionine

glycyl-L-proline

glycyl-L-glutamate

L-alanyl-L-glutamate

L-alanyl-L-histidine

L-alanyl-L-aspartate

L-methionyl-L-alanine dipeptide

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

urate

salicylaldehyde

4-hydroxybenzoate

vanillyl mandelate

normetanephrine

metanephrine

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

baicalein

6,7-dehydrobaicalein

2',4,4',6'-tetrahydroxychalcone

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

protocatechuate

(R)-adrenaline

(R)-noradrenaline

L-dopa

dopamine

salicylate

4-aminobenzoate

benzoate

preQ₀

coenzyme A

(R)-lipoate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

riboflavin

nicotinamide

nicotinate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

all-trans-retinol

24-methylidenelophenol

cholest-4-en-3-one

(25S)-26-hydroxycholest-4-en-3-one

(25S)-26-oxocholest-4-en-3-one

(25S)-3-oxocholest-4-en-26-oate

17-hydroxy-3-oxo-4-pregnane-20-carboxyl-CoA

3-oxo-4,17-pregnadiene-20-carboxyl-CoA

22-hydroxy-3-oxochol-4-en-24-oyl-CoA

3-oxochol-4,22-dien-24-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3-oxocholest-4,24-dien-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

cycloartenol

24-methylenecycloartanol

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

pregnenolone

androst-4-ene-3,17-dione

3-β-hydroxyandrost-5-en-17-one

cholesterol

cholest-5-en-3-one

17-α-hydroxypregnenolone

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

cis-dienelactone

trans-dienelactone

PAI-1

VAI-1-2

HAI-1

VAI-1

AAI-1

PAI-1-2

all-trans-retinyl palmitate

(E)-glutaconyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

3'-dephospho-CoA

2-methylbutanoyl-CoA

isovaleryl-CoA

phenylacetyl-CoA

3-methylcrotonyl-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

malonyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

4-hydroxybenzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-methylglutaconyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(3Z)-dodec-3-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxylinoleoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxystearoyl-CoA

18-hydroxyoleoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxytetradecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

butanoyl-CoA

propanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

hexanoyl-CoA

pristanoyl-CoA

stearoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

palmitoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

3-oxoadipyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

6-aminopenicillanate

penicillin G

isopenicillin N

(7R)-7 aminocephalosporanate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

(4S)-4-hydroxy-2-oxoglutarate

L-aspartate

fumarate

succinate

(S)-malate

D-glucarate

α,ω-9Z-octadecenedioate

cis-aconitate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

3-carboxy-cis,cis-muconate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

D-threo-isocitrate

3-oxoadipate

pyruvate

acetate

formate

(S)-lactate

(R)-lactate

7-hydroxylaurate

decanoate

laurate

octanoate

16-hydroxypalmitate

18-hydroxystearate

18-hydroxyoleate

(15Z)-tetracosenoate

leukotriene-D4

leukotriene-E4

oleate

palmitate

stearate

linoleate

α-linolenate

(2E)-hexadecenoate

phytenate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1-linoleoyl-sn-glycero-3-phosphocholine

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

orotate

(R)-pantoate

D-mannonate

(S)-1-pyrroline-5-carboxylate

4-deoxy-L-erythro-hex-4-enopyranuronate

D-tagaturonate

aldehydo-D-galacturonate

carbamate

L-kynurenine

L-2-aminoadipate

L-serine

β-alanine

L-leucine

glycine

L-glutamine

L-alanine

L-proline

D-glutamate

L-glutamate

L-histidine

L-arginine

L-lysine

L-tyrosine

L-phenylalanine

L-tryptophan

D-alanine

L-saccharopine

S-sulfanyl-L-cysteine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

3-phospho-L-serine

N⁶,N⁶-dimethyl-L-arginine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-(3-oxododecanoyl)-L-homoserine

N-(octanoyl)-L-homoserine

N-(3-hydroxybutanoyl)-L-homoserine

N-(3-oxohexanoyl)-L-homoserine

N-(3-oxooctanoyl)-L-homoserine

N-(butyryl)-L-homoserine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

3-hydroxy-L-kynurenine

trans-4-hydroxy-L-proline

5-hydroxy-L-tryptophan

O-acetyl-L-homoserine

L-asparagine

L-threonine

L-ornithine

L-cystathionine

L-methionine

L-isoglutamine

L-cysteine

L,L-diaminopimelate

L-selenocysteine

L-isoleucine

L-valine

L-citrulline

L-cystine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

L-homoserine

L-canaline

S-sulfo-L-cysteine

1-aminocyclopropane-1-carboxylate

meso-diaminopimelate

L-allo-threonine

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

glycerol

methanol

ethanol

butan-1-ol

phytate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

24-ethylidenelophenol

sitosterol

3-oxo-24-ethyl-cholest-5-ene

geranyl diphosphate

trans,octacis-decaprenyl phosphate

all-trans-lycopene

γ-carotene

β-carotene

δ-carotene

α-carotene

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-dodecaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-tridecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-undecaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-hexaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-palmitoyl-sn-glycero-3-phosphocholine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-myristoyl-sn-glycerol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1,2-dipalmitoyl-sn-glycero-3-phosphocholine

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-18:1-2-18:1-phosphatidylethanolamine

α-Kdo-(2→6)-lipid IV_A

betanidin

betanidin quinone

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

1-(β-D ribofuranosyl)nicotinamide

4-O-β-D-mannopyranosyl-N-acetyl-D-glucosamine

α,α-trehalose

β-D-fructofuranose

β-L-fucopyranose

α-L-fucopyranose

L-ribulose

D-ribulose

α-D-ribofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

N-acetyl-α-D-mannosamine

D-glyceraldehyde

glycolaldehyde

β-D-galactopyranose

α-D-galactopyranose

L-fuculose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

D-ribulose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-altronate

diacetyl

methylglyoxal

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

1-octanal

formaldehyde

acetaldehyde

butan-1-al

(S)-lactaldehyde

decanal

dodecanal

phytenal

precorrin-1

precorrin-2

sirohydrochlorin

UTP

CDP

dCMP

dCDP

dUTP

dUMP

dTTP

CTP

UDP

uracil

dCTP

dTDP

cytosine

dUDP

dTMP

UMP

CMP

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

adenine

guanine

hypoxanthine

isoguanine

N3-methylcytosine

N¹-methyladenine

N¹-ethyladenine

preQ₁

inosine

adenosine

guanosine

xanthosine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

GTP

ATP

GDP

ADP

IMP

GMP

XMP

AMP

dATP

dGTP

dADP

dGDP

dAMP

dGMP

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenylo-succinate

8-oxo-GTP

8-oxo-dGTP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

5'-deoxyadenosine

pppGpp

ppGpp

(R)-NADPHX

(S)-NADPHX

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA