an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
4-oxoglutaramate
quinolinate
autoinducer 2
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
histidinal
(R)-4'-phosphopantothenate
glutathione disulfide
(2R,4S)-2, 4-diaminopentanoate
(2R)-2-amino-4-oxopentanoate
dialurate
(R)-1-amino-2-propanol O-2-phosphate
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
(S)-dihydroorotate
L-arginino-succinate
carboxyphosphate
dihydroxyacetone
5-aminolevulinate
porphobilinogen
preuroporphyrinogen
(S)-4-amino-5-oxopentanoate
hydrogenobyrinate
hydrogenobyrinate a,c-diamide
α-ribazole
5,6-dimethylbenzimidazole
α-ribazole 5'-phosphate
3-ureidopropanoate
DNA without lesion
prephenate
2-dehydro-3-deoxy-D-gluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
O-acetyl-L-serine
5-methylcytosine
β-D-ribosylnicotinate
methylsalicylate
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
L-quinate
1-deoxy-L-glycero-tetrulose 4-phosphate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
5-amino-6-(D-ribitylamino)uracil
3-dehydroquinate
3-dehydroshikimate
shikimate
thiamine diphosphate
(R)-4'-phosphopantothenoyl-L-cysteine
4'-phosphopantetheine
shikimate 3-phosphate
7,8-diaminopelargonate
dethiobiotin
4-amino-4-deoxychorismate
2-oxoglutaramate
creatinine
acetoacetate
(R)-pantothenate
2-dehydropantoate
thiamine phosphate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
5-(methylsulfanyl)-α-D-ribose
S-ribosyl-L-homocysteine
hydrogen peroxide
H2
S-methyl-5'-thioadenosine
S-adenosyl 3-(methylsulfanyl)propylamine
poly(ribitol phosphate)
O-D-alanyl-poly(ribitol phosphate)
selenophosphate
β-nicotinate D-ribonucleotide
L-canavanine
urea
4-imidazolone-5-propanoate
urocanate
prenyl diphosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
5-aminopentanoate
dihydrolipoate
pimeloyl-CoA
8-amino-7-oxononanoate
isochorismate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
oxaloacetate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
isopentenyl diphosphate
xanthine
(indol-3-yl)pyruvate
(indol-3 yl)acetyl-CoA
mercuriphenyl acetate
(S)-3-methyl-2-oxopentanoate
4-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
glycerone phosphate
acetyl phosphate
nicotinate adenine dinucleotide
2-C-methyl-D-erythritol 4-phosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
L-histidinol phosphate
histidinol
formamide
butanoyl phosphate
α-D-glucosamine 1-phosphate
orotidine 5'-phosphate
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
carbonic acid
glycolate
coproporphyrinogen III
4-aminobutanoate
salicyl alcohol
O-ureido-L-homoserine
phosphocholine
5-enolpyruvoyl-shikimate 3-phosphate
phosphoenolpyruvate
3-deoxy-D-arabino-heptulosonate 7-phosphate
CO2
carbamoyl phosphate
H2O
DNA with lesion
L-homocysteine
N2
adenosylcobalamin
cob(I)alamin
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
adenosylcobyrate
adenosylcobinamide-GDP
adenosylcobalamin 5'-phosphate
adenosyl-cobinamide phosphate
cobalt-sirohydrochlorin
cobalt-precorrin-2
cob(I)yrinate a,c-diamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)inamide
adenosylcobinamide
protoheme
protoporphyrin IX
uroporphyrinogen-III
uroporphyrinogen-I
coproporphyrinogen I
protoporphyrinogen IX
siroheme
hydrogen sulfide
oxygen
2-iminosuccinate
2-iminopropanoate
2-iminobutanoate
2-chloroacetate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
α-D-glucosamine 6-phosphate
N-acetyl-β-neuraminate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
Fe3+
K+
H+
ammonium
Fe2+
Co2+
Hg2+
Cd2+
Mo2+
OH-
superoxide
selenide
hydrogencarbonate
molybdate
nitrate
phosphate
triphosphate
diphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
glycine betaine
choline
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
agmatine
putrescine
spermidine
glutathione
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
all-trans-retinyl palmitate
malonyl-CoA
(2S)-ethylmalonyl-CoA
(2R)-ethylmalonyl-CoA
succinyl-CoA
CoA-disulfide
3'-dephospho-CoA
(R)-2-hydroxyglutaryl-CoA
(E)-glutaconyl-CoA
acetyl-CoA
(S)-methylmalonyl-CoA
(R)-methylmalonyl-CoA
crotonyl-CoA
oleoyl-CoA
18-hydroxylinoleoyl-CoA
butanoyl-CoA
cis-vaccenoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
acetoacetyl-CoA
cholate
chenodeoxycholate
7-oxolithocholate
methyl (indol-3-yl)acetate
(indol-3-yl)acetate
nicotinate
thiamine
riboflavin
all-trans-retinol
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
pyridoxal
pyridoxine
pyridoxamine
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADPH
NADH
NADP+
NAD+
isoguanine
8-oxo-dGTP
8-oxo-GTP
dGTP
dATP
dADP
dGDP
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
2'-deoxyinosine
hypoxanthine
adenylo-succinate
2'-deoxyadenosine
dAMP
2'-deoxyguanosine
dGMP
XMP
IMP
GTP
GMP
GDP
5'-deoxyadenosine
AMP
ATP
ADP
5-fluorocytosine
5-fluorouracil
(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)
two adjacent thymidines in DNA
xanthosine
guanosine
inosine
adenosine
cytidine
uridine
thymidine
2'-deoxyuridine
2'-deoxycytidine
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CTP
5-hydroxy-CMP
dCTP
dTTP
dUTP
CTP
UTP
dUMP
dTMP
dCMP
UMP
CMP
dTDP
dUDP
dCDP
CDP
UDP
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
ADP-α-D-glucose
cytosine
thymine
uracil
guanine
adenine
CDP-choline
5,6-dihydrouracil
5,6-dihydrothymine
UDP-α-D-glucose
CDP-α-D-glucose
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-α-D-galactose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-4-dehydro-β-L-rhamnose
CDP-4-dehydro-6-deoxy-α-D-glucose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
(R)-lipoate
coenzyme A
MoO2-molybdopterin cofactor
thio-molybdenum cofactor
(S)-1-pyrroline-5-carboxylate
precorrin-3A
precorrin-6A
precorrin-4
precorrin-5
precorrin-6B
precorrin-7
precorrin-8x
precorrin-1
precorrin-2
sirohydrochlorin
hydantoin
7,8-dihydrolumazine
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
7,8-dihydroneopterin 3'-phosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropterin
orotate
urate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
benzene
hydroquinone
2,3-dihydroxybenzoate
protocatechuate
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
salicylate
4-aminobenzoate
methylglyoxal
glycolaldehyde
formaldehyde
acetaldehyde
(S)-lactaldehyde
(R)-lactaldehyde
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
β-D-ribopyranose
α-D-glucopyranose
β-D-glucopyranose
α-D-galactopyranose
β-D-galactopyranose
β-D-allofuranose
β-D-allopyranose
methanol
glycerol
ethylene glycol
(S)-propane-1,2-diol
(R)-propane-1,2-diol
1-(β-D ribofuranosyl)nicotinamide
aldehydo-D-galacturonate
maltotriose
raffinose
stachyose
maltotetraose
maltoheptaose
maltohexaose
maltopentaose
sucrose
keto-D-fructose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
D-xylulose
D-ribulose
β-D-fructofuranose
L-fuculose
β-L-fucopyranose
α-L-fucopyranose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
1-O-acetyl-α-maltose
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
D-ribulose-1,5-bisphosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
β-D-fructose 1,6-bisphosphate
salicin 6-phosphate
arbutin-6-phosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
D-ribulose 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
L-fuculose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
methyl β-D-glucoside 6-phosphate
D-mannonate
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
all-trans-heptaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
chorismate
fumarate
L-aspartate
(4S)-4-hydroxy-2-oxoglutarate
3-(carbamoylamino)-2-methylpropanoate
3-phenyl-2-oxopropanoate
pyruvate
glyoxylate
2-oxobutanoate
2-oxoglutarate
acetate
formate
(R)-lactate
(S)-lactate
butanoate
leukotriene-D4
leukotriene-E4
palmitate
(R)-pantoate
D-tagaturonate
carbamate
L-serine
L-threonine
L-asparagine
L-tyrosine
glycine
L-glutamine
L-cysteine
L-arginine
L-histidine
L-glutamate
L-isoleucine
L-leucine
L-valine
L-phenylalanine
L-proline
L-alanine
L-methionine
N-carbamoylsarcosine
creatine
β-alanine
β-glutamate
(R)-3-amino-2-methylpropanoate
D-glutamate
D-ornithine
D-aspartate
D-proline
D-alanine
L-isoglutamine
L,L-diaminopimelate
L-aspartyl-4-phosphate
L-ornithine
N-carbamoyl-L-aspartate
formyl-L-isoglutamine
N-formyl-L-methionine
N-formimino-L-glutamate
sarcosine
N-carbamoylglycine
trans-4-hydroxy-L-proline
L-citrulline
L-homoserine
L-glutamate-5-semialdehyde
L-aspartate 4-semialdehyde
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-canaline
meso-diaminopimelate
N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine
N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine