ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11639

succinate semialdehyde

C11543

H2O

C996

adenosine 5'-phosphosulfate

C192

adenosine 5'-phosphoselenate

C2586

(E)-4-coumaroyl-CoA

C371

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

C15306

2,3-didehydroadipyl-CoA

C891

citrate

C928

CO2

C1530

(2R,3S)-3-isopropylmalate

C13417

2-isopropylmaleate

C1438

(2S)-2-isopropylmalate

C3821

5-methylcytosine

C6361

acetoacetate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1231

5-aminolevulinate

C12214

(S)-4-amino-5-oxopentanoate

C12162

hydrogen peroxide

C1108

acetyl phosphate

C11715

quinolinate

C11857

β-nicotinate D-ribonucleotide

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C11826

oxalosuccinate

C12350

7,8-diaminopelargonate

C3264

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

C1130

8-amino-7-oxononanoate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C13946

5-(methylsulfanyl)-α-D-ribose

C10349

glycerone phosphate

C11479

phosphoenolpyruvate

C12044

L-histidinol phosphate

C12125

imidazole acetol-phosphate

C1208

5-dehydro-D-gluconate

C13870

2-hydroxy-3-oxosuccinate

C11986

meso-tartrate

C11635

L-tartrate

C914

chlorite

C1186

5-oxo-L-proline

C6597

3-ureidopropanoate

C3850

5-amino-6-(D-ribitylamino)uracil

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C873

coproporphyrinogen III

C15282

D-galactosamine-6-phosphate

C11932

N-acetyl-D-galactosamine 6-phosphate

C1321

4-aminobutanoate

C6349

3-oxopropanoate

C3262

3-methyl-2-oxobutanoate

C3319

4-methyl-2-oxopentanoate

C3417

(S)-3-methyl-2-oxopentanoate

C12409

creatinine

C1265

4-phosphooxy-L-threonine

C3343

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

C1353

3-phosphooxypyruvate

C3656

D-gluconate 6-phosphate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C1303

4-guanidinobutyramide

C11483

glycolate

C13604

2-hydroxy-6-oxohepta-2,4-dienoate

C13605

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

C15305

(2E,4Z)-2-hydroxymuconate

C1447

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

C15304

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

C232

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

C3269

(S)-4-hydroxy-2-oxopentanoate

C3279

2-oxopent-4-enoate

C13681

5-carboxymethyl-2-hydroxymuconate

C13683

2-hydroxy-5-carboxymethylmuconate semialdehyde

C933

L-canavanine

C932

canavaninosuccinate

C12056

L-arginino-succinate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1184

5-phospho-β-D-ribosylamine

C14074

prenyl diphosphate

C4883

2-oleoylglycerol

C11873

N-succinyl-L,L-2,6-diaminopimelate

C13850

hydrogenobyrinate a,c-diamide

C13851

hydrogenobyrinate

C11838

2-succinylbenzoate

C13284

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

C1305

4-fumaryl-acetoacetate

C11606

thiamine phosphate

C2191

carbamoyl phosphate

C13793

(2R,3S)-3-methylmalate

C1491

citraconate

C9422

nicotinate adenine dinucleotide

C11604

thiamine diphosphate

C13812

dihydrogeranylgeranyl diphosphate

C13811

tetrahydrogeranylgeranyl diphosphate

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C12364

isopentenyl diphosphate

C11930

N-acetylglutamyl-phosphate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C14924

carboxyphosphate

C6614

O-ureido-L-homoserine

C13627

DNA without lesion

C12176

histidinol

C12178

histidinal

C12390

D-erythro-imidazole-glycerol-phosphate

C6444

oxaloacetate

C13824

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

C1688

phloretin

C13817

pinocembrin chalcone

C12254

ethanolamine

C12029

S-ribosyl-L-homocysteine

C1196

S-methyl-5'-thioadenosine

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C13928

urea-1-carboxylate

C191

L-selenocystathionine

C11539

xanthine

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C3259

2-oxovalerate

C506

3-ethylmalate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C1002

anthranilate

C11946

N-(5-phosphoribosyl)-anthranilate

C1528

2-dehydropantoate

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C14145

3-deoxy-D-glycero-2,5-hexodiulosonate

C3344

2-dehydro-3-deoxy-D-gluconate

C12374

3-dehydro-2-deoxy-D-gluconate

C12375

2-deoxygluconate

C11767

porphobilinogen

C1431

3-dehydroshikimate

C12369

3-dehydroquinate

C11652

shikimate 3-phosphate

C11653

shikimate

C1538

2-C-methyl-D-erythritol 4-phosphate

C11802

4'-phosphopantetheine

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C11557

urocanate

C12139

preuroporphyrinogen

C14218

L-β-lysine

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C1078

(S)-2-amino-6-oxohexanoate

C11760

prephenate

C12218

α-D-glucosamine 1-phosphate

C1102

O-acetyl-L-serine

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C12016

(lipoyl)adenylate

C7865

urea

C352

2-iminoacetate

C12256

ethylamine

C689

N-ethylglycine

C11982

methylamine

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C13649

N-ethylammeline

C13650

deethylsimazine

C12355

dethiobiotin

C651

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

C11874

N-succinyl-2-amino-6-ketopimelate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C1285

4-imidazolone-5-propanoate

C12230

formamide

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C12096

isochorismate

C12192

carbonic acid

C1036

α-ribazole 5'-phosphate

C12315

5,6-dimethylbenzimidazole

C11711

(R)-1-amino-2-propanol O-2-phosphate

C1038

α-ribazole

C1633

(R)-1-aminopropan-2-ol

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C12048

γ-L-glutamyl 5-phosphate

C13635

β-D-ribosylnicotinate

C2580

methylsalicylate

C15056

salicyl alcohol

C13542

Nβ-acetylstreptothricin F

C13913

N-carbamoylputrescine

C14181

2-maleylacetate

C12584

N-(2,3-dihydroxybenzoyl)-L-serine trimer

C11950

N-(2,3-dihydroxybenzoyl)-L-serine

C15227

N-(2,3-dihydroxybenzoyl)-L-serine dimer

C3482

dihydroxyacetone

C8333

(indol-3-yl)pyruvate

C1112

ManNAc-GlcNAc-PP-undecaprenol

C2346

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11832

orotidine 5'-phosphate

C12352

(S)-dihydroorotate

C473

(2-hydroxyphenyl)acetate

C12171

homogentisate

C1283

4-maleyl-acetoacetate

C11794

3'-phosphoadenylyl-sulfate

C927

carbon monoxide

C13630

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

C13546

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

C1519

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

C13950

pimeloyl-CoA

C3338

2-oxoglutaramate

C12494

N-acetyl-D-muramate 6-phosphate

C12492

1,6-anhydro-N-acetyl-β-muramate

C15156

dialurate

C12325

1,4-dihydroxy-2-naphthoate

C13854

hydrogen selenide

C12630

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

C12628

2-oxepin-2(3H)-ylideneacetyl-CoA

C12626

3-oxo-5,6-didehydrosuberyl-CoA

C12415

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

C4674

glutathione disulfide

C12848

N5-carboxyaminoimidazole ribonucleotide

C1631

3-amino-1-hydroxyacetone 1-phosphate

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C12324

autoinducer 2

C13283

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

C13281

1,4-dihydroxy-2-naphthoyl-CoA

C266

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

C4688

glutathioselenol

C4690

selenodiglutathione

C1271

4-oxoglutaramate

C13702

1-piperideine 6-carboxylate

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C9431

1,2-dihydro-β-NADP

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C12274

enol-phenylpyruvate

C1010

ammonia

C13855

(2E)-2-hydroxypenta-2,4-dienoate

C3355

(3E)-2-oxopent-3-enoate

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C5684

a thiol group

C8537

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

C8545

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C1434

D-alanyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C5032

carbamate

C3536

L-α-amino-ε-keto-pimelate

C12303

L-citrulline

C5612

L-cysteine

C5583

L-methionine

C5596

L-aspartate

C12067

glycine

C2469

L-phenylalanine

C5609

L-glutamine

C5642

L-arginine

C5597

L-alanine

C5607

L-glutamate

C5581

L-proline

C5584

L-lysine

C5571

L-valine

C5588

L-leucine

C5603

L-isoleucine

C5575

L-tryptophan

C5579

L-serine

C5577

L-threonine

C5573

L-tyrosine

C5643

L-asparagine

C5605

L-histidine

C12239

L-aspartate 4-semialdehyde

C15292

S-adenosyl-L-methionine

C12245

L-homoserine

C12227

O-succinyl-L-homoserine

C12231

L-ornithine

C12203

S-adenosyl-L-homocysteine

C12237

L-canaline

C12247

L-homocysteine

C12229

O-phospho-L-homoserine

C12233

L-glutamate-5-semialdehyde

C9505

L-allo-threonine

C5592

L-selenocysteine

C5585

meso-diaminopimelate

C12073

L-aspartyl-4-phosphate

C12063

seleno-L-homocysteine

C12065

L-saccharopine

C12165

2-hydroxy-5-oxoproline

C11955

O-acetyl-L-homoserine

C10821

trans-4-hydroxy-L-proline

C13320

N-carbamoylglycine

C5476

formyl-L-isoglutamine

C15000

N-acetyl-L-ornithine

C14988

N-acetyl-L-citrulline

C5466

N-formimino-L-glutamate

C14973

N-acetyl-L-glutamate

C3628

sarcosine

C13322

N-carbamoyl-L-aspartate

C6936

S-methyl-L-cysteine

C4740

S-methyl-L-methionine

C3652

L-threonine 3-O-phosphate

C3402

3-phospho-L-serine

C5595

L-cystathionine

C5580

L,L-diaminopimelate

C4716

S-trans-1-propenyl-L-cysteine

C2490

S-allyl-L-cysteine

C5601

L-isoglutamine

C8799

D-alanine

C8797

D-glutamate

C8805

D-aspartate

C8795

D-serine

C11443

creatine

C11441

β-alanine

C11435

(R)-β-lysine

C11433

(S)-3-amino-2-methylpropanoate

C11434

(R)-3-amino-2-methylpropanoate

C3812

3-(methylsulfanyl)propanoate

C11429

salicylate

C11409

2,3-dihydroxybenzoate

C2521

trans-cinnamate

C11421

protocatechuate

C8968

benzoate

C11517

acetate

C11485

D-gluconate

C11482

(R)-pantoate

C11510

5-chloro-5-deoxy-D-ribonate

C11481

orotate

C4985

(S)-1-pyrroline-5-carboxylate

C2774

pristanate

C3418

butanoate

C3383

palmitate

C3387

stearate

C3412

decanoate

C3409

octanoate

C3415

laurate

C3207

7-hydroxylaurate

C538

18-hydroxyoleate

C553

16-hydroxypalmitate

C550

18-hydroxystearate

C13210

oleate

C13266

(15Z)-tetracosenoate

C13260

phytenate

C6379

linoleate

C10590

α-linolenate

C6165

leukotriene-E4

C6163

leukotriene-D4

C951

4-hydroxybutanoate

C6185

(R)-lactate

C11212

(R)-3-hydroxybutanoate

C3308

pyruvate

C3421

formate

C3288

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C3351

glyoxylate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C3086

4-(methylsulfanyl)-2-oxobutanoate

C3345

3-phenyl-2-oxopropanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C6371

3-oxoadipate

C8534

cis-aconitate

C8536

3-carboxy-cis,cis-muconate

C8531

D-threo-isocitrate

C5463

3-(carbamoylamino)-2-methylpropanoate

C3316

(3E)-2-oxohex-3-enedioate

C8931

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

C8950

chorismate

C8923

α,ω-9Z-octadecenedioate

C6442

succinate

C6443

fumarate

C2802

(S)-malate

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8033

5-amino-4-imidazolecarboxyamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C4815

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

C4817

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

C8597

daunorubicin

C13685

streptothricin F

C7136

tetraprenyl-β-curcumene

C11012

phytyl diphosphate

C3727

all-trans-retinyl palmitate

C10966

all-trans-retinol

C9077

(2E,6E)-farnesyl diphosphate

C9304

trans,octacis-decaprenyl phosphate

C8321

geranyl diphosphate

C2930

ferrichrome

C2727

enterobactin

C668

iron(III) dicitrate

C5098

(3Z,5E)-dodeca-3,5-dienoyl-CoA

C5100

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

C5125

2-trans-nonenoyl-CoA

C5111

4-trans-3-oxo-undecenoyl-CoA

C5119

4-cis-undecenoyl-CoA

C5121

6-cis, 3-oxo-tridecenoyl-CoA

C5084

(3E)-dec-3-enoyl-CoA

C5088

(5E)-3-oxo-dodec-5-enoyl-CoA

C5113

4-trans-undecenoyl-CoA

C5114

6-trans-3-oxo-tridecenoyl-CoA

C4549

3-heptaprenyl-4-hydroxybenzoate

C4545

3-nonaprenyl-4-hydroxybenzoate

C4553

3-octaprenyl-4-hydroxybenzoate

C4550

3-decaprenyl-4-hydroxybenzoate

C7060

3-hexaprenyl-4-hydroxybenzoate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C5382

all-trans-heptaprenyl diphosphate

C5378

geranylgeranyl diphosphate

C15301

all-trans-nonaprenyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C5364

all-trans-decaprenyl diphosphate

C5368

all-trans-hexaprenyl diphosphate

C10393

1-oleoyl-sn-glycerol

C4334

1-oleoyl-2-palmitoyl-phosphatidylglycerol

C5904

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

C3676

L-idonate

C4086

1-(β-D ribofuranosyl)nicotinamide

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C1043

GDP-4-dehydro-α-D-rhamnose

C1009

GDP-α-D-mannose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C1939

dTDP-α-D-glucose

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7822

UDP-N-acetyl-α-D-muramate

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C5849

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7790

UDP-N-acetyl-α-D-mannosamine

C7444

UDP-N-acetyl-α-D-glucosamine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C10338

5-phospho-α-D-ribose 1-diphosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10356

4-phospho-D-erythronate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C8811

α-D-glucopyranose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C2057

α-D-ribose-1-phosphate

C7314

5-fluoro-5-deoxy-D-ribose 1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C6711

α-D-ribose 5-phosphate

C6709

β-D-ribose 5-phosphate

C10604

D-ribulose 5-phosphate

C10607

L-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C10379

a peptidoglycan dimer (E. faeciums)

C10372

a peptidoglycan dimer (S. aureus)

C10368

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10358

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

C10366

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

C10360

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

C10375

a mature peptidoglycan(n) (meso-DAP containing)

C10377

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C355

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C358

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C8835

β-D-fructofuranose

C9494

D-glyceraldehyde

C6188

α-L-arabinopyranose

C2061

α-D-ribofuranose

C2858

glycolaldehyde

C15288

N-acetylmuramate

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C5286

N-acetyl-β-D-glucosamine

C3731

glycerol

C2764

3-methylcatechol

C2770

4-methylcatechol

C8865

3-sulfocatechol

C2768

catechol

C2760

3,4-dihydroxyphenylacetate

C10527

myo-inositol

C13573

1D-myo-inositol 3-monophosphate

C13576

1D-myo-inositol 1-monophosphate

C3450

ethanol

C3449

butan-1-ol

C3448

methanol

C6090

methylglyoxal

C3649

benzaldehyde

C3500

acetaldehyde

C3485

butan-1-al

C3483

formaldehyde

C2542

isoliquiritigenin

C15317

2',4,4',6'-tetrahydroxychalcone

C10182

2,5-piperidinedione

C10143

menadione

C10147

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

C10175

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

C10048

caldariellaquinone

C2040

diacetyl

C6973

dehypoxanthine futalosine

C6868

futalosine

C6934

4-hydroxybenzoate

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C3093

urate

C2565

2,3-dihydroxy-trans-cinnamate

C2461

3-hydroxy-trans-cinnamate

C2915

menadiol

C1869

caldariellaquinol

C1867

3-demethylubiquinol-8

C1866

3-demethylubiquinol-10

C1868

3-demethylubiquinol-9

C1865

3-demethylubiquinol-7

C1863

demethylmenaquinol-8

C1859

demethylmenaquinol-11

C1864

demethylmenaquinol-13

C1861

demethylmenaquinol-12

C1860

demethylmenaquinol-7

C1857

demethylmenaquinol-6

C1856

demethylmenaquinol-10

C1862

demethylmenaquinol-9

C1680

menaquinol-8

C1670

menaquinol-11

C1673

menaquinol-13

C1671

menaquinol-12

C1672

menaquinol-7

C1679

menaquinol-6

C1677

menaquinol-10

C1674

menaquinol-9

C5543

ubiquinol-8

C5563

ubiquinol-10

C5551

ubiquinol-9

C5535

ubiquinol-7

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C2133

6-isobutyl-4-hydroxy-2-pyrone

C9454

adenine

C9455

guanine

C7809

AMP

C7811

XMP

C7741

IMP

C7827

GMP

C7844

ATP

C7745

GTP

C7759

ITP

C7753

XTP

C7757

ADP

C7795

GDP

C7817

IDP

C7807

dGDP

C7823

dADP

C7747

dIDP

C7749

dITP

C7783

dATP

C7751

dGTP

C7834

dIMP

C7785

hypoxanthine

C15088

adenosine

C15091

inosine

C15085

guanosine

C15094

xanthosine

C7755

2'-deoxyinosine

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C14603

tetrahydromethanopterin

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12696

7,8-dihydromonapterin

C12664

7,8-dihydroneopterin

C12676

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

C12726

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C12708

7,8-dihydroneopterin 3'-phosphate

C14624

5,10-methylene-tetrahydromethanopterin

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C6003

guanylyl molybdenum cofactor

C6007

MoO2-molybdopterin cofactor

C15044

reduced riboflavin

C10049

FMNH2

C10050

FADH2

C10988

riboflavin

C10052

FMN

C10053

FAD

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C8739

uracil

C8707

cytosine

C10601

thymine

C9540

preQ1

C7649

isoguanine

C8732

CDP

C8733

dCDP

C8714

UDP

C8752

dUDP

C8744

dTMP

C8770

dUMP

C7801

5,6-dihydrothymine

C4012

5,6-dihydrouracil

C8755

dCMP

C8724

dUTP

C8720

dTDP

C8760

UTP

C8772

dCTP

C8761

CTP

C8764

dTTP

C2241

UMP

C2245

CMP

C2706

uridine

C2702

cytidine

C2519

thymidine

C2527

2'-deoxyuridine

C2523

2'-deoxycytidine

C6945

5-fluorouracil

C2001

hydantoin

C5221

adenosylcobalamin

C9874

cob(I)alamin

C9861

cobyrinate

C1705

sirohydrochlorin

C2311

precorrin-2

C2305

precorrin-1

C2300

precorrin-5

C2320

precorrin-4

C2302

precorrin-3A

C2297

precorrin-8x

C2323

precorrin-7

C2317

precorrin-6B

C2308

precorrin-6A

C9799

cobalt-precorrin-2

C2314

precorrin-3B

C10614

coenzyme A

C10611

(R)-lipoate

C10288

adenylo-succinate

C10266

ppGpp

C10267

pppGpp

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5552

5'-deoxyadenosine

C7652

cyclic-AMP

C11254

5-chloro-5-deoxyribose 1-phosphate

C5546

5'-chloro-5'-deoxyadenosine

C7655

8-oxo-GTP

C7647

8-oxo-dGTP

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C4243

β-nicotinamide D-ribonucleotide

C10280

5-hydroxy-CMP

C10290

5-hydroxy-CTP

C10284

2-hydroxy-dATP

C1817

cyclic di-3',5'-guanylate

C4018

NADP+

C4020

NAD+

C14497

NADPH

C14500

NADH

C9420

two adjacent thymidines in DNA

C9419

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

C7306

5'-deoxy-5'-fluoroadenosine

C9773

5-fluorocytosine

C11516

glycine betaine

C5392

(S)-NADHX

C5394

(R)-NADHX

C10994

thiamine

C10982

nicotinate

C4210

pyridoxal 5'-phosphate

C4214

pyridoxine 5'-phosphate

C4188

pyridoxamine 5'-phosphate

C4216

pyridoxamine

C4208

pyridoxine

C4200

pyridoxal

C12545

ethene

C11480

phenylacetate

C9096

(indol-3-yl)acetate

C9098

methyl (indol-3-yl)acetate

C6218

(+)-7-epi-jasmonate

C4796

3,22-dioxochol-4-en-24-oyl-CoA

C4490

3-oxo-4-pregnene-20-carboxyl-CoA

C4911

methylacrylyl-CoA

C5274

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

C5272

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

C5285

(E)-2-methylcrotonoyl-CoA

C5310

3-hydroxyisovaleryl-CoA

C5279

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

C5278

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

C5315

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

C5308

(3S)-hydroxyadipyl-CoA

C5266

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

C5265

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

C5298

acetyl-CoA

C4901

succinyl-CoA

C5061

(2R)-ethylmalonyl-CoA

C4953

(2S)-ethylmalonyl-CoA

C4922

isobutanoyl-CoA

C5260

(+)-7-epi-jasmonoyl-CoA

C4915

α-linolenoyl-CoA

C5056

linoleoyl-CoA

C5075

5-aminolevulinyl-CoA

C5314

2-methylacetoacetyl-CoA

C4920

isovaleryl-CoA

C4913

malonyl-CoA

C5250

dihydro-4-coumaroyl-CoA

C4937

3'-dephospho-CoA

C5302

4-hydroxybutanoyl-CoA

C5276

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

C5275

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

C5035

4-hydroxybenzoyl-CoA

C5270

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

C5268

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

C5263

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

C5014

phenylacetyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5313

2-methylbutanoyl-CoA

C11197

(S)-3-hydroxy-isobutanoyl-CoA

C5635

oleoyl-CoA

C3150

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

C10758

3-oxoadipyl-CoA

C10759

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

C10762

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

C10757

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

C6079

3-oxo-myristoyl-CoA

C6074

3-oxo-(5Z)-tetradecenoyl-CoA

C6083

3-oxo-palmitoyl-CoA

C6075

3-oxooctadecanoyl-CoA

C5845

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

C5843

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

C2009

3-oxopentanoyl-CoA

C2008

acetoacetyl-CoA

C6200

3-oxohexanoyl-CoA

C6198

3-oxodecanoyl-CoA

C6197

3-oxooctanoyl-CoA

C6201

3-oxododecanoyl-CoA

C6566

16-hydroxypalmitoyl-CoA

C6558

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

C6568

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

C5892

palmitoyl-CoA

C5885

stearoyl-CoA

C5890

myristoyl-CoA

C491

18-hydroxyoleoyl-CoA

C480

18-hydroxystearoyl-CoA

C2873

pristanoyl-CoA

C14697

decanoyl-CoA

C14677

octanoyl-CoA

C14674

lauroyl-CoA

C11187

7-hydroxylauroyl-CoA

C14662

hexanoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C11399

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C7176

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C7165

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

C7164

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

C7353

(S)-3-hydroxydecanoyl-CoA

C15307

(S)-3-hydroxyoctanoyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C7152

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

C7149

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C5879

(3R)-3-hydroxyoctadecanoyl-CoA

C7356

(3R)-3-hydroxypentanoyl-CoA

C8353

(3Z)-dodec-3-enoyl-CoA

C11400

phytenoyl-CoA

C11398

(E)-cinnamoyl-CoA

C4299

(2E)-oct-2-enoyl-CoA

C4309

(2E)-dec-2-enoyl-CoA

C11402

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

C1337

crotonyl-CoA

C5919

(S)-methylmalonyl-CoA

C5920

(R)-methylmalonyl-CoA

C10100

trans-dienelactone

C10102

cis-dienelactone

C10791

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

C1464

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

C1461

γ-L-glutamyl-(S)-methyl-L-cysteine

C1476

γ-L-glutamyl-[(S)-allyl]-L-cysteine

C4606

S-(hydroxymethyl)glutathione

C4678

glutathione

C7994

(2R)-phospho-3-sulfolactate

C12637

3-sulfopyruvate

C12587

L-cysteate

C2209

(2R)-3-sulfolactate

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C3998

methanethiol

C2179

choline

C2169

betaine aldehyde

C10301

agmatine

C3564

spermine

C3548

putrescine

C3574

spermidine

C3583

N1-acetylspermine

C3592

N-acetylputrescine

C3610

N1-acetylspermidine

C6526

(2Z)-2-aminobut-2-enoate

C6524

2-aminoprop-2-enoate

C6708

2-iminopropanoate

C11219

glycerophosphoserine

C11220

glycerophosphoglycerol

C11222

sn-glycero-3-phosphoethanolamine

C8958

superoxide

C8965

hydroxyl radical

C7014

sulfate

C7020

selenate

C7016

sulfite

C7036

hydrogencarbonate

C7022

selenide

C7025

OH-

C7017

selenite

C7034

hydrogensulfite

C7006

chloride

C6097

phosphate

C6093

diphosphate

C6094

triphosphate

C7864

Fe3+

C11021

Mn2+

C11001

Mo2+

C11023

Fe2+

C11006

Co2+

C4328

ammonium

C4320

H+

C4318

K+

C11281

2-chloroacetate

C13354

preQ0

C6287

2-octaprenylphenol

C6290

(S)-3-hydroxy-isobutanoate

C6741

(S)-methylmalonate-semialdehyde

C6763

(R)-methylmalonate-semialdehyde

C6755

(R)-citramalate

C2017

α-D-glucosamine 6-phosphate

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C6599

2-iminobutanoate

C6596

2-iminosuccinate

C7121

oxygen

C7118

hydrogen sulfide

C7676

protoporphyrin IX

C7672

coproporphyrinogen I

C7662

uroporphyrinogen-I

C7658

uroporphyrinogen-III

C7666

protoporphyrinogen IX

C6624

protoheme

C9828

cob(II)yrinate a,c-diamide

C9811

cob(II)yrinate c-monoamide

C9845

cobalt-sirohydrochlorin

C9807

adenosylcobinamide

C9869

cob(I)inamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9823

cob(I)yrinate a,c-diamide

C9800

adenosylcobyrate

C1218

adenosylcobalamin 5'-phosphate

C9830

adenosylcobinamide-GDP

C9855

adenosyl-cobinamide phosphate

C803

ethylphosphate

C10799

DNA with lesion