an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

hydrogen peroxide

hydrogenobyrinate a,c-diamide

porphobilinogen

preuroporphyrinogen

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

mesaconate

4-aminobutanoate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-fumaryl-acetoacetate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

L-selenocystathionine

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

oxalosuccinate

succinate semialdehyde

ethanolamine

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

ammonia

hydroxylamine

carboxyphosphate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

prephenate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

orotidine 5'-phosphate

5-aminopentanoate

dihydrolipoate

α-D-glucosamine 1-phosphate

(R)-4'-phosphopantothenate

urea

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

glycerone phosphate

5-phospho-β-D-ribosylamine

3-phosphooxypyruvate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

selenophosphate

nicotinate adenine dinucleotide

4-imidazolone-5-propanoate

urea-1-carboxylate

N-(5-phosphoribosyl)-anthranilate

anthranilate

5-amino-6-(D-ribitylamino)uracil

DNA without lesion

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

(2,3-dihydroxybenzoyl)adenylate

(L-aspartyl)adenylate

(R)-4'-phosphopantothenoyl-L-cysteine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

L-histidinol phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

7,8-diaminopelargonate

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

H₂

(R)-pantothenate

β-D-ribosylnicotinate

4'-phosphopantetheine

2-dehydropantoate

hydroxypyruvate

glycolate

phosphocholine

2-carboxy-L-threo-pentonate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

N²-acetyl-α-aminoadipate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

(S)-2-hydroxymethylglutarate

(S)-2-formylglutarate

2-carboxy-L-xylonolactone

enol-phenylpyruvate

pyruvic oxime

1,2-dihydro-β-NADP

1-piperideine 6-carboxylate

3-deoxy-α-D-manno-2-octulosonate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

shikimate

3-dehydroquinate

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

3-dehydroshikimate

acetoacetate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

xanthine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

coproporphyrinogen III

oxaloacetate

O-acetyl-L-serine

(S)-2-amino-6-oxohexanoate

urocanate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

hydrogenobyrinate

L-canavanine

D-gluconate 6-phosphate

dihydroxyacetone

aminoacetone

carbamoyl phosphate

CO₂

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

5-dehydro-D-gluconate

phosphoenolpyruvate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

3-deoxy-D-manno-octulosonate 8-phosphate

acetyl phosphate

butanoyl phosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

histidinal

histidinol

(R)-2,3-dihydroxy-3-methylpentanoate

3-keto-L-gulonate

2,3-dioxo-L-gulonate

citrate

H₂O

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

dethiobiotin

3-keto-L-gulonate 6-phosphate

dehydroascorbate (bicyclic form)

formamide

quinolinate

N⁵-carboxyaminoimidazole ribonucleotide

L-dehydro-ascorbate

(S)-dihydroorotate

preQ₀

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-chloroacetate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

molybdate

hydrogencarbonate

selenide

selenite

selenate

nitrate

phosphonate

phosphate

triphosphate

diphosphate

chloride

Fe³⁺

Co²⁺

Fe²⁺

Zn²⁺

Mg²⁺

Mo²⁺

K⁺

H⁺

ammonium

monodehydroascorbate radical

(2E,6E)-farnesyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

ferrichrome

glycine betaine

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

glutathione

methanethiol

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

malonyl-CoA

(R)-2-hydroxyglutaryl-CoA

succinyl-CoA

3'-dephospho-CoA

(E)-glutaconyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

phenylacetyl-CoA

2-methylacetoacetyl-CoA

isobutanoyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

butanoyl-CoA

pentanoyl-CoA

propanoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

chenodeoxycholate

cholate

7-oxolithocholate

phenylacetate

L-ascorbate

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

pppGpp

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

hypoxanthine

IMP

adenylo-succinate

dATP

dADP

dGTP

dGDP

XMP

GMP

AMP

ATP

ADP

GTP

GDP

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

ADP-α-D-glucose

preQ₁

uracil

thymine

guanine

adenine

cyclic di-3',5'-guanylate

dCTP

dUTP

dTTP

UTP

CTP

dTMP

dUMP

dCMP

CMP

UMP

dUDP

dTDP

dCDP

CDP

UDP

β-nicotinamide D-ribonucleotide

CDP-choline

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-glucuronate

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

molybdopterin

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

(S)-1-pyrroline-5-carboxylate

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-5B

precorrin-1

cobalt-precorrin-6B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cobalt-precorrin-3

precorrin-2

cobalt-precorrin-2

precorrin-3B

precorrin-4

precorrin-8x

cobyrinate

sirohydrochlorin

adenosylcobalamin

cob(I)alamin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

butan-1-ol

glycerol

ethylene glycol

(S)-propane-1,2-diol

(R)-propane-1,2-diol

protocatechuate

2,3-dihydroxybenzoate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

glycolaldehyde

1-O-acetyl-α-maltose

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-mannonate

D-gluconate

L-idonate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

L-aspartate

(S)-malate

3-carboxy-cis,cis-muconate

(2R)-homocitrate

(1R,2S)-homoisocitrate

cis-homoaconitate

cis-aconitate

D-threo-isocitrate

pyruvate

2-oxobutanoate

glyoxylate

2-oxoglutarate

3-phenyl-2-oxopropanoate

acetate

formate

propanoate

(R)-lactate

butanoate

pentanoate

4-hydroxybutanoate

(R)-glycerate

palmitate

(R)-pantoate

trans-cinnamate

carbamate

L-2-aminoadipate

L-serine

L-tyrosine

L-threonine

L-glutamine

glycine

L-cysteine

L-lysine

L-arginine

L-histidine

L-glutamate

L-valine

L-tryptophan

L-leucine

L-phenylalanine

L-alanine

L-proline

L-isoleucine

L-methionine

β-alanine

D-glutamate

D-aspartate

D-alanine

D-proline

L-cystathionine

L-aspartyl-4-phosphate

L,L-diaminopimelate

L-isoglutamine

L-ornithine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

seleno-L-homocysteine

L-saccharopine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

(2S, 3S)-3-methylaspartate

O-acetyl-L-homoserine

L-citrulline

hypoglycin A

O-phospho-L-homoserine

L-canaline

O-succinyl-L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

meso-diaminopimelate

3-oxoadipate

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

diacetyl

methylglyoxal

butan-1-al

acetaldehyde

(S)-lactaldehyde

(R)-lactaldehyde

sn-glycerol 3-phosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

DNA with lesion

cobalt-factor III

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobalt-sirohydrochlorin

protoheme

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

N₂

oxygen

hydrogen sulfide

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

2-iminobutanoate

2-iminosuccinate