ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C9431

1,2-dihydro-β-NADP

C12274

enol-phenylpyruvate

C1010

ammonia

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C11653

shikimate

C11652

shikimate 3-phosphate

C7865

urea

C13635

β-D-ribosylnicotinate

C1325

4-amino-4-deoxychorismate

C12192

carbonic acid

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C1528

2-dehydropantoate

C1538

2-C-methyl-D-erythritol 4-phosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1321

4-aminobutanoate

C12218

α-D-glucosamine 1-phosphate

C12178

histidinal

C12176

histidinol

C12044

L-histidinol phosphate

C12125

imidazole acetol-phosphate

C1353

3-phosphooxypyruvate

C14924

carboxyphosphate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C12364

isopentenyl diphosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C11604

thiamine diphosphate

C12162

hydrogen peroxide

C11715

quinolinate

C891

citrate

C14074

prenyl diphosphate

C1002

anthranilate

C12352

(S)-dihydroorotate

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C10349

glycerone phosphate

C3417

(S)-3-methyl-2-oxopentanoate

C855

coenzyme F390-A

C12390

D-erythro-imidazole-glycerol-phosphate

C1431

3-dehydroshikimate

C12369

3-dehydroquinate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C13970

β-D-fructose 2,6-bisphosphate

C11539

xanthine

C191

L-selenocystathionine

C12394

6-phospho D-glucono-1,5-lactone

C3656

D-gluconate 6-phosphate

C3344

2-dehydro-3-deoxy-D-gluconate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C14202

hexulose 6-phosphate

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C1108

acetyl phosphate

C11760

prephenate

C11832

orotidine 5'-phosphate

C13417

2-isopropylmaleate

C1491

citraconate

C13793

(2R,3S)-3-methylmalate

C11873

N-succinyl-L,L-2,6-diaminopimelate

C11874

N-succinyl-2-amino-6-ketopimelate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C3295

2-keto-D-gluconate

C1454

2,5-didehydro-D-gluconate

C2580

methylsalicylate

C15056

salicyl alcohol

C13764

oligosaccharide with β-D-xylopyranosyl-(1->4)-β-D-xylopyranosyl-(1->4)-β-D-xylopyranose at the reducing end

C13763

oligosaccharide with β-D-xylopyranosyl-(1->4)-α-D-xylopyranose at the reducing end

C13627

DNA without lesion

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C11479

phosphoenolpyruvate

C11857

β-nicotinate D-ribonucleotide

C9422

nicotinate adenine dinucleotide

C12048

γ-L-glutamyl 5-phosphate

C11483

glycolate

C933

L-canavanine

C12056

L-arginino-succinate

C932

canavaninosuccinate

C2191

carbamoyl phosphate

C6614

O-ureido-L-homoserine

C14003

N-acetyl-L-glutamate 5-semialdehyde

C11930

N-acetylglutamyl-phosphate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1184

5-phospho-β-D-ribosylamine

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C12848

N5-carboxyaminoimidazole ribonucleotide

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C12029

S-ribosyl-L-homocysteine

C12324

autoinducer 2

C1530

(2R,3S)-3-isopropylmalate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C3319

4-methyl-2-oxopentanoate

C506

3-ethylmalate

C3259

2-oxovalerate

C3262

3-methyl-2-oxobutanoate

C1438

(2S)-2-isopropylmalate

C6444

oxaloacetate

C352

2-iminoacetate

C12254

ethanolamine

C13672

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

C3322

(4Z)-2-oxohept-4-enedioate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11802

4'-phosphopantetheine

C11800

(R)-pantothenate

C1268

(R)-4'-phosphopantothenate

C11946

N-(5-phosphoribosyl)-anthranilate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11606

thiamine phosphate

C11826

oxalosuccinate

C11543

H2O

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C928

CO2

C10799

DNA with lesion

C6043

4-methylphenol

C12247

L-homocysteine

C803

ethylphosphate

C7121

oxygen

C7118

hydrogen sulfide

C6599

2-iminobutanoate

C6596

2-iminosuccinate

C6708

2-iminopropanoate

C11281

2-chloroacetate

C8419

sn-glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C6644

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

C6755

(R)-citramalate

C11510

5-chloro-5-deoxy-D-ribonate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C10049

FMNH2

C10052

FMN

C10053

FAD

C5392

(S)-NADHX

C5394

(R)-NADHX

C1869

caldariellaquinol

C10048

caldariellaquinone

C14500

NADH

C14497

NADPH

C4020

NAD+

C4018

NADP+

C4328

ammonium

C4320

H+

C7036

hydrogencarbonate

C6097

phosphate

C6093

diphosphate

C7006

chloride

C4678

glutathione

C3998

methanethiol

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C12587

L-cysteate

C12637

3-sulfopyruvate

C6526

(2Z)-2-aminobut-2-enoate

C6524

2-aminoprop-2-enoate

C1434

D-alanyl-D-alanine

C8518

γ-L-glutamyl-L-cysteine

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C11421

protocatechuate

C11429

salicylate

C8974

4-aminobenzoate

C10614

coenzyme A

C2239

oxidized coenzyme F420-2

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C10994

thiamine

C10996

nicotinamide

C10988

riboflavin

C10982

nicotinate

C4208

pyridoxine

C4214

pyridoxine 5'-phosphate

C4200

pyridoxal

C4216

pyridoxamine

C4188

pyridoxamine 5'-phosphate

C4210

pyridoxal 5'-phosphate

C10966

all-trans-retinol

C2810

all-trans-retinal

C6358

glycocholate

C6332

cholate

C9098

methyl (indol-3-yl)acetate

C9096

(indol-3-yl)acetate

C3727

all-trans-retinyl palmitate

C4937

3'-dephospho-CoA

C4901

succinyl-CoA

C5298

acetyl-CoA

C5919

(S)-methylmalonyl-CoA

C5635

oleoyl-CoA

C11195

18-hydroxylinoleoyl-CoA

C1177

propanoyl-CoA

C5637

cis-vaccenoyl-CoA

C5890

myristoyl-CoA

C5651

palmitoleoyl-CoA

C8033

5-amino-4-imidazolecarboxyamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8950

chorismate

C6442

succinate

C5596

L-aspartate

C6443

fumarate

C8536

3-carboxy-cis,cis-muconate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C6371

3-oxoadipate

C3308

pyruvate

C11517

acetate

C3421

formate

C6185

(R)-lactate

C6186

(S)-lactate

C13210

oleate

C3383

palmitate

C3542

1-palmitoyl-2-cis-vaccenoyl phosphatidate

C3119

1,2-dicis-vaccenoyl-phosphatidate

C3512

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

C3514

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

C3510

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

C11482

(R)-pantoate

C11481

orotate

C4985

(S)-1-pyrroline-5-carboxylate

C3536

L-α-amino-ε-keto-pimelate

C5032

carbamate

C5579

L-serine

C11441

β-alanine

C5588

L-leucine

C5581

L-proline

C5609

L-glutamine

C12067

glycine

C5597

L-alanine

C8797

D-glutamate

C5607

L-glutamate

C5605

L-histidine

C5642

L-arginine

C5584

L-lysine

C5575

L-tryptophan

C5573

L-tyrosine

C2469

L-phenylalanine

C8805

D-aspartate

C8799

D-alanine

C12063

seleno-L-homocysteine

C12073

L-aspartyl-4-phosphate

C3402

3-phospho-L-serine

C13322

N-carbamoyl-L-aspartate

C15000

N-acetyl-L-ornithine

C14973

N-acetyl-L-glutamate

C14976

N-acetyl-L-methionine

C10821

trans-4-hydroxy-L-proline

C11955

O-acetyl-L-homoserine

C5583

L-methionine

C5612

L-cysteine

C5595

L-cystathionine

C5580

L,L-diaminopimelate

C5643

L-asparagine

C5577

L-threonine

C12231

L-ornithine

C5571

L-valine

C5603

L-isoleucine

C12303

L-citrulline

C12245

L-homoserine

C12227

O-succinyl-L-homoserine

C12233

L-glutamate-5-semialdehyde

C12229

O-phospho-L-homoserine

C12237

L-canaline

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C12239

L-aspartate 4-semialdehyde

C5585

meso-diaminopimelate

C2488

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

C3345

3-phenyl-2-oxopropanoate

C3351

glyoxylate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C11222

sn-glycero-3-phosphoethanolamine

C11220

glycerophosphoglycerol

C11219

glycerophosphoserine

C3731

glycerol

C3448

methanol

C3450

ethanol

C2023

(S)-propane-1,2-diol

C10527

myo-inositol

C6255

D-ononitol

C6679

D-galactosylononitol

C13576

1D-myo-inositol 1-monophosphate

C13573

1D-myo-inositol 3-monophosphate

C6681

galactinol

C9304

trans,octacis-decaprenyl phosphate

C10125

β-carotene 15,15' epoxide

C10927

15,15'-dihydroxy-β-carotene

C8158

β-carotene

C8322

di-trans,octa-cis-undecaprenyl phosphate

C5639

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

C10024

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C6239

1-myristoyl-sn-glycerol 3-phosphate

C6240

1-palmitoyl-sn-glycerol 3-phosphate

C6242

1-cis-vaccenoyl-sn-glycerol-3-phosphate

C3826

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

C3822

1-palmitoyl-2-myristoyl phosphatidate

C3816

1,2-dimyristoyl-sn-glycerol 3-phosphate

C3117

dioleoyl phosphatidate

C4086

1-(β-D ribofuranosyl)nicotinamide

C10688

maltotriose

C5727

raffinose

C6899

stachyose

C10689

maltotetraose

C10692

maltoheptaose

C10691

maltohexaose

C10690

maltopentaose

C10693

sucrose

C8835

β-D-fructofuranose

C2012

keto-D-fructose

C2143

D-xylulose

C2068

β-D-xylopyranose

C2065

aldehydo-D-ribose

C2061

α-D-ribofuranose

C2062

β-D-ribofuranose

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C9494

D-glyceraldehyde

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C2108

β-D-galactopyranose

C2109

α-D-galactopyranose

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3126

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C7780

UDP-α-D-glucose

C10263

ADP-α-D-glucose

C1939

dTDP-α-D-glucose

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7822

UDP-N-acetyl-α-D-muramate

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C8666

UDP-α-D-galactose

C7804

UDP-α-D-galactofuranose

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2123

β-D-glucose 6-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10607

L-ribulose 5-phosphate

C10604

D-ribulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C2057

α-D-ribose-1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2040

diacetyl

C6090

methylglyoxal

C3483

formaldehyde

C6246

(S)-lactaldehyde

C8732

CDP

C8733

dCDP

C8714

UDP

C8720

dTDP

C8724

dUTP

C8761

CTP

C8764

dTTP

C8772

dCTP

C8755

dCMP

C8770

dUMP

C8744

dTMP

C8760

UTP

C8739

uracil

C2245

CMP

C2241

UMP

C2702

cytidine

C2706

uridine

C9455

guanine

C9454

adenine

C7785

hypoxanthine

C15094

xanthosine

C15085

guanosine

C15088

adenosine

C15091

inosine

C7759

ITP

C7745

GTP

C7844

ATP

C7795

GDP

C7757

ADP

C7741

IMP

C7811

XMP

C7827

GMP

C7809

AMP

C7783

dATP

C7751

dGTP

C7823

dADP

C7807

dGDP

C7840

dGMP

C7743

dAMP

C15044

reduced riboflavin

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12726

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

C12676

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

C10609

7,8-dihydropteroate

C10288

adenylo-succinate

C10267

pppGpp

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5552

5'-deoxyadenosine

C1817

cyclic di-3',5'-guanylate

C10290

5-hydroxy-CTP

C10280

5-hydroxy-CMP

C4243

β-nicotinamide D-ribonucleotide

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA