an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
2-oleoylglycerol
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
cis-coumarinic acid-β-D-glucoside
L-arginino-succinate
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(5-phospho-D-ribitylamino)uracil
4-methylumbelliferyl glucoside
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
4-aminobutanoate
1,6-anhydro-N-acetyl-β-muramate
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
4-(γ-L-glutamylamino)butanoate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
salicyl alcohol
O-D-alanyl-poly(ribitol phosphate)
poly(ribitol phosphate)
ammonia
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
5-hydroxyindole thiazolidine carboxylate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
acetoacetate
2,5-didehydro-D-gluconate
2-keto-D-gluconate
glycerone phosphate
H2O
(R)-4'-phosphopantothenate
(R)-pantothenate
2-O-(6-phospho-α-D-mannosyl)-D-glycerate
CO2
2-amino-2-deoxy-D-gluconate 6-phosphate
4'-phosphopantetheine
nicotinate adenine dinucleotide
CDP-glycerol
hexulose 6-phosphate
prenyl diphosphate
(1R,2R)-cyclohexa-3,5-diene-1,2-diol
(R)-mevalonate diphosphate
N-acetyl-D-galactosamine 6-phosphate
(R)-mevalonate
D-galactosamine-6-phosphate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
N-acetyl-D-muramate 6-phosphate
1,4-dihydroxy-2-naphthoate
autoinducer 2
S-ribosyl-L-homocysteine
carbamoyl phosphate
N1-(5-phospho-β-D-ribosyl)glycinamide
(S)-dihydroorotate
5-phospho-β-D-ribosylamine
3-carboxy-2,5-dihydro-5-oxofuran-2-acetate
β-D-ribosylnicotinate
glycolate
(R)-4'-phosphopantothenoyl-L-cysteine
(4,5-dihydro-5-oxofuran-2-yl)-acetate
phosphoenolpyruvate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
xanthine
citrate
α-D-glucosamine 1-phosphate
L-selenocystathionine
D-gluconate 6-phosphate
N,N-dimethyl-1,4-phenylenediamine
acetyl phosphate
thiamine diphosphate
3-keto-L-gulonate 6-phosphate
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
UDP-4-deoxy-4-formamido-β-L-arabinopyranose
oxalosuccinate
morphinone
pseudouridine 5'-phosphate
thiamine phosphate
oxalate
3-phosphooxypyruvate
(indol-3-yl)acetamide
quinolinate
4-guanidinobutanoate
hydrogen peroxide
4-guanidinobutyramide
dihydroxyacetone
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
propionamide
indole-3-glycol aldehyde
indole-3-glycol
acrylate
acrylamide
oxaloacetate
N-succinyl-L,L-2,6-diaminopimelate
(R)-5-phosphomevalonate
ManNAc-GlcNAc-PP-undecaprenol
2-methylbutanal
2-methylbutanol
isopentenyl diphosphate
succinate semialdehyde
enol-phenylpyruvate
isobutanol
3-methoxy-4-hydroxyphenylglycolaldehyde
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA
5-hydroxyindole acetaldehyde
5-hydroxytryptophol
3-methylbutanal
3-methylbutanol
DNA without lesion
orotidine 5'-phosphate
6-phospho D-glucono-1,5-lactone
2-phenylethanol
ethanolamine
S-formylglutathione
β-nicotinate D-ribonucleotide
5-amino-6-(5-phospho-D-ribosylamino)uracil
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
5-amino-6-(D-ribitylamino)uracil
4-amino-2-methyl-5-pyrimidinemethanol
pseudouridine
scopolin
2-dehydro-3-deoxy-D-gluconate 6-phosphate
carbon monoxide
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
7-epicholate
5-ureidoimidazole-4-carboxylate
5-aminoimidazole-4-carboxylate
4-aminoimidazole
3,5-dihydro-4H-imidazol-4-one
N-succinyl-2-amino-6-ketopimelate
3-methyl-2-oxobutanoate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
3-keto-β-D-galactose
(S)-2,3,4,5-tetrahydrodipicolinate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
H2
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
4-hydroxybenzaldehyde
2-iminoacetate
5,10-methenyltetrahydrofolate mono-L-glutamate
L-α-amino-ε-keto-pimelate
L-citrulline
L-methionine
L-proline
L-aspartate
L-asparagine
L-lysine
L-arginine
L-threonine
L-valine
L-cysteine
glycine
L-alanine
L-glutamate
L-glutamine
L-tyrosine
L-serine
L-phenylalanine
L-leucine
L-histidine
L-ornithine
O-phospho-L-homoserine
L-homoserine
L-homocysteine
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
O-succinyl-L-homoserine
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
meso-diaminopimelate
L,L-diaminopimelate
L-cystathionine
L-aspartyl-4-phosphate
N-carbamoyl-L-aspartate
D-glutamate
D-aspartate
D-alanine
L-selenomethionine
seleno-L-homocysteine
N-formimino-glycine
S-methyl-L-methionine
3-phospho-L-serine
IMP
AMP
adenosine 3'-monophosphate
adenosine 2',3'-cyclic monophosphate
guanosine 3'-monophosphate
guanosine 2',3'-cyclic monophosphate
ADP
ATP
GDP
GMP
dGDP
dADP
adenosine 2'-monophosphate
cyclic-AMP
XMP
pppGpp
ppGpp
dATP
hypoxanthine
GTP
dGTP
2'-deoxyinosine
dAMP
2'-deoxyadenosine
dGMP
2'-deoxyguanosine
guanosine 2'-monophosphate
adenylo-succinate
5'-deoxyadenosine
adenine
guanine
purine
uracil
thymine
cytidine 2'-monophosphate
uridine 2'-monophosphate
uridine 2'3'-cyclic monophosphate
cytidine 2',3'-cyclic monophosphate
dUDP
dCDP
dTDP
dUTP
dCTP
dTTP
dUMP
dTMP
dCMP
β-nicotinamide D-ribonucleotide
CMP
UMP
UDP
CDP
CTP
UTP
NADPH
NADH
NAD+
NADP+
uridine 3'-monophosphate
cytidine-3'-monophosphate
inosine
adenosine
xanthosine
guanosine
2'-deoxyuridine
thymidine
2'-deoxycytidine
uridine
cytidine
UDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-glucosamine
ADP-D-ribose
GDP-α-D-mannose
orotate
FMNH2
reduced riboflavin
FMN
FAD
riboflavin
7,8-dihydropteroate
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
5,10-methylenetetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
6,7-dimethyl-8-(1-D-ribityl)lumazine
coumarin
scopoletin
4-methylumbelliferone
parathion
urate
4-tyrosol
6,8-dihydroxypurine
8-hydroxypurine
4-methylphenol
protocatechuate
benzoate
coumarinate
(4-hydroxyphenyl)acetaldehyde
phenylacetaldehyde
3-methoxy-4-hydroxyphenylglycol
hydroquinone
3-demethylubiquinol-8
menaquinol-8
ubiquinol-8
demethylmenaquinol-8
catechol
3,4-dihydroxyphenylglycolaldehyde
3,4-dihydroxyphenylglycol
aniline
(3E,5Z)-tetradeca-3,5-dienoyl-CoA
(2E,6E)-farnesyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
geranyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
1-oleoyl-2-lyso-glycerone phosphate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-oleoyl-sn-glycerol 3-phosphate
dioleoyl phosphatidate
cephalosporin C
deacetylcephalosporin C
morphine
D-glucono-1,5-lactone
isobutanoyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
dihomo γ-linolenoyl-CoA
3'-dephospho-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
2-methylacetoacetyl-CoA
(3S)-citryl-CoA
acetyl-CoA
oxalyl-CoA
formyl-CoA
(+)-7-epi-jasmonoyl-CoA
succinyl-CoA
oleoyl-CoA
stearoyl-CoA
palmitoyl-CoA
propanoyl-CoA
butanoyl-CoA
hexadecanedioyl-CoA
(3R)-3-hydroxybutanoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
crotonyl-CoA
D-gluconate
1-(β-D ribofuranosyl)nicotinamide
XXXG xyloglucan oligosaccharide
β-D-cellobiose
sucrose
melibiose
α-lactose
raffinose
stachyose
XXLG xyloglucan oligosaccharide
XLLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
aldehydo-D-ribose
β-D-ribopyranose
β-D-ribofuranose
α-D-ribofuranose
β-D-glucopyranose
α-D-glucopyranose
β-D-galactopyranose
α-D-galactopyranose
D-glyceraldehyde
β-D-fructofuranose
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-neuraminate
N-acetyl-β-D-glucosamine
N-acetyl-β-D-mannosamine
N-acetyl-α-D-glucosamine 1-phosphate
glycerol
D-mannitol 1-phosphate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
1-O-acetyl-α-maltose
3'-ketolactose
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
L-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
α-D-mannose 1-phosphate
α-D-galactose 1-phosphate
α-D-glucopyranose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
D-fructose 6-phosphate
L-ascorbate 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
β-D-galactose 6-phosphate
α-D-galactose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-mannopyranose 6-phosphate
salicin 6-phosphate
arbutin-6-phosphate
sucrose 6F-phosphate
β-D-cellobiose 6'-phosphate
lotaustralin
methyl β-D-glucoside 6-phosphate
neolinustatin
linamarin
linustatin
taxiphyllin
D-glyceraldehyde 3-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
1-propanal
isobutanal
acetaldehyde
formaldehyde
butan-1-al
phytenal
pyruvate
glyoxylate
2-oxobutanoate
2-oxoglutarate
3-phenyl-2-oxopropanoate
3-oxoadipate
acetate
(3E,5Z)-tetradecadienoate
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate
palmitate
stearate
di-homo-γ-linolenate
sophorosyloxydocosanoate
13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate
13-sophorosyloxydocosanoate 6',6''-diacetate
butanoate
cis-aconitate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
propanoate
formate
(S)-lactate
(R)-lactate
(R)-glycerate
succinate
fumarate
(S)-malate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
hydrogen cyanide
(2R)-2-hydroxy-2-methylbutanenitrile
2-hydroxy-2-methylpropanenitrile
dimethyl sulfide
3-(methylsulfanyl)propanal
methionol
S-(hydroxymethyl)glutathione
glutathione
thiocyanate
3-sulfopyruvate
L-cysteate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
nicotinamide
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
acetamide
estrone
17β-estradiol
(+)-7-epi-jasmonate
(indol-3-yl)acetate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
cholate
glycocholate
isocholate
3-dehydrocholate
thiamine
nicotinate
pyridoxal 5'-phosphate
pyridoxal
pyridoxine 5'-phosphate
pyridoxine
pyridoxamine 5'-phosphate
pyridoxamine
(S)-NADHX
(R)-NADHX
hydrogensulfite
thiosulfate
sulfate
hydrogencarbonate
sulfite
phosphonate
phosphate
diphosphate
Fe3+
H+
Na+
ammonium
Ca2+
Mg2+
Co2+
Cu2+
Cd2+
trimethyl sulfonium
spermidine
putrescine
2-aminoprop-2-enoate
2-iminopropanoate
(2Z)-2-aminobut-2-enoate
propan-1-ol
phytol
ethanol
butan-1-ol
methanol
2-iminobutanoate
2-iminosuccinate
coenzyme A
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-D-glutamate
glycyl-L-glutamine
glycyl-L-aspartate
L-alanyl-L-glutamine
L-alanyl-L-leucine
glycyl-L-asparagine
L-alanyl-L-aspartate
L-alanyl-L-histidine
L-alanyl-L-glutamate
glycyl-L-glutamate
L-cysteinylglycine
glycyl-L-proline
glycyl-L-methionine
L-alanyl-glycine
L-alanyl-L-threonine
D-alanyl-D-alanine
L-methionyl-L-alanine dipeptide
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
N-acetyl-D-mannosamine 6-phosphate
α-D-glucosamine 6-phosphate
4-dimethylaminophenylazobenzene
2,3-diphospho-D-glycerate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
oxygen
adenosylcobyrate
adenosyl-cob(III)yrinate a,c-diamide
ethylphosphate
DNA with lesion
hippurate