an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
1,4-dihydroxy-2-naphthoate
2-O-(6-phospho-α-D-mannosyl)-D-glycerate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
6-phospho D-glucono-1,5-lactone
oxalate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
autoinducer 2
(R)-pantothenate
acetoacetate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
hexulose 6-phosphate
3-keto-L-gulonate 6-phosphate
4-prenylphlorisobutyrophenone
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
xanthine
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
ethanolamine
CDP-glycerol
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
ManNAc-GlcNAc-PP-undecaprenol
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
thiamine diphosphate
(S)-dihydroorotate
orotidine 5'-phosphate
N-succinyl-L,L-2,6-diaminopimelate
3-keto-β-D-galactose
arsenite
carbamoyl phosphate
pyrazine-2-carboxylate
(R)-mevalonate
(R)-5-phosphomevalonate
(R)-mevalonate diphosphate
isopentenyl diphosphate
prenyl diphosphate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
4-amino-4-deoxychorismate
poly(ribitol phosphate)
O-D-alanyl-poly(ribitol phosphate)
indole-3-ethanol
D-gluconate 6-phosphate
hydrogen peroxide
3-carboxy-2,5-dihydro-5-oxofuran-2-acetate
4-pyridoxolactone
glycerone phosphate
α-D-glucosamine 1-phosphate
acetyl phosphate
H2
S-methyl-5'-thioadenosine
5-(methylsulfanyl)-α-D-ribose
S-ribosyl-L-homocysteine
salicyl alcohol
scopolin
4-hydroxybenzaldehyde
cis-coumarinic acid-β-D-glucoside
4-methylumbelliferyl glucoside
phosphoenolpyruvate
nigerose
1-deoxy-L-glycero-tetrulose 4-phosphate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
5-amino-6-(D-ribitylamino)uracil
5-hydroxytryptophol
5-hydroxyindole acetaldehyde
indole-3-glycol
indole-3-glycol aldehyde
2-methylbutanol
2-methylbutanal
isobutanol
3-methoxy-4-hydroxyphenylglycolaldehyde
3-methylbutanol
3-methylbutanal
2-phenylethanol
oxaloacetate
citrate
4'-phosphopantetheine
CO2
(R)-4'-phosphopantothenate
(R)-4'-phosphopantothenoyl-L-cysteine
glycolate
DNA without lesion
H2O
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
5-hydroxyindole thiazolidine carboxylate
ammonia
2-amino-3-carboxymuconate-6-semialdehyde
(4-hydroxyphenyl)acetate
urea
3,5-dihydro-4H-imidazol-4-one
4-aminoimidazole
5-aminoimidazole-4-carboxylate
5-ureidoimidazole-4-carboxylate
hydroxypyruvate
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
7-epicholate
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
quinolinate
L-arginino-succinate
3-methyl-2-oxobutanoate
carbon monoxide
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
4-amino-2-methyl-5-pyrimidinemethanol
thiamine phosphate
2-iminoacetate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N-acetyl-D-muramate 6-phosphate
oxalosuccinate
3,4-dihydroxyphenylacetaldehyde
prop-2-ynal
propynoate
dimethylsulfoniopropanoate
4-acetamidobutanal
4-acetamidobutanoate
imidazole acetaldehyde
4-imidazoleacetate
5-hydroxyindole acetate
D-glucurono-6,3-lactone
(2E,6E)-farnesol
(2E,6E)-farnesyl diphosphate
oxygen
sn-glycerol 1-phosphate
sn-glycerol 3-phosphate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
2-iminopropanoate
2-iminobutanoate
2-iminosuccinate
trimethyl sulfonium
sulfite
selenide
thiosulfate
hydrogensulfite
hydrogencarbonate
phosphonate
phosphate
triphosphate
diphosphate
ammonium
H+
Zn2+
Co2+
Cd2+
Mg2+
L-homocysteine
4-methylphenol
S-methyl-L-methionine
methionol
3-(methylsulfanyl)propanal
dimethyl sulfide
3-dimethylsulfoniopropionaldehyde
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
thiocyanate
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
putrescine
spermidine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
glycyl-L-glutamine
glycyl-L-aspartate
L-alanyl-L-glutamine
L-alanyl-L-leucine
glycyl-L-asparagine
L-alanyl-L-aspartate
L-alanyl-L-histidine
L-alanyl-L-glutamate
glycyl-L-glutamate
L-cysteinylglycine
glycyl-L-proline
glycyl-L-methionine
L-alanyl-glycine
L-alanyl-L-threonine
N-acetyl-L-glutaminyl-L-glutamine
N-acetyl-L-glutaminyl-L-glutamine amide
L-alanyl-D-glutamate
D-alanyl-D-alanine
L-methionyl-L-alanine dipeptide
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
glycerophosphoglycerol
glycerol
L-arabinitol
D-mannitol 1-phosphate
galactitol
D-mannitol
(3R)-linalool
(3S)-linalool
methanol
propan-1-ol
ethanol
butan-1-ol
phytol
myo-inositol
D-ononitol
D-galactosylononitol
galactinol
hydroquinone
3,4-dihydroxyphenylglycol
3,4-dihydroxyphenylglycolaldehyde
protocatechuate
3,4-dihydroxyphenylacetate
3,4-dihydroxymandelate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
glycocholate
cholate
3-dehydrocholate
isocholate
(indol-3-yl)acetate
5-amino-4-imidazolecarboxyamide
pyrazinamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
nicotinamide
N-acetyl-β-neuraminate
L-tyrosine
L-cysteine
L-serine
L-threonine
L-asparagine
L-glutamine
glycine
L-glutamate
L-aspartate
L-arginine
L-lysine
L-histidine
L-phenylalanine
D-aspartate
D-alanine
D-glutamate
L-aspartyl-4-phosphate
N-formimino-glycine
N-carbamoyl-L-aspartate
N-formyl-L-methionine
L-leucine
L-proline
L-valine
L-selenocysteine
L-alanine
L-methionine
L-ornithine
L,L-diaminopimelate
L-cystathionine
L-citrulline
L-homoserine
O-phospho-L-homoserine
L-aspartate 4-semialdehyde
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
O-succinyl-L-homoserine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
butanoate
octanoate
(2E,6E)-farnesoate
13-sophorosyloxydocosanoate 6',6''-diacetate
13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate
sophorosyloxydocosanoate
phytenate
3-carboxy-cis,cis-muconate
cis-aconitate
D-threo-isocitrate
acetate
D-gluconate
orotate
aldehydo-D-glucuronate
chorismate
D-glucarate
succinate
fumarate
(S)-malate
(R)-lactate
(S)-lactate
pyruvate
formate
3-oxoadipate
3-(4-hydroxyphenyl)pyruvate
3-phenyl-2-oxopropanoate
4-(methylsulfanyl)-2-oxobutanoate
2-oxobutanoate
2-oxoglutarate
glyoxylate
4-aminobenzoate
benzoate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
(2E,6E)-farnesal
D-glyceraldehyde
L-glyceraldehyde
aldehydo-D-mannose
β-D-mannopyranose
α-D-galactopyranose
β-D-galactopyranose
α-D-glucopyranose
β-D-glucopyranose
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
aldehydo-L-arabinose
phytenal
formaldehyde
acetaldehyde
1-propanal
isobutanal
butan-1-al
1-octanal
(S)-lactaldehyde
(4-hydroxyphenyl)acetaldehyde
phenylacetaldehyde
benzaldehyde
1-O-acetyl-α-maltose
3'-ketolactose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
GDP-α-D-glucose
GDP-α-D-mannose
ADP-D-ribose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-mannosamine
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
sucrose 6F-phosphate
β-D-cellobiose 6'-phosphate
α-lactose 6'-phosphate
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (mycobacteria)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
methyl β-D-glucoside 6-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
lotaustralin
salicin 6-phosphate
arbutin-6-phosphate
neolinustatin
linustatin
linamarin
taxiphyllin
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
β-D-fructose 1,6-bisphosphate
D-tagatofuranose 1,6-bisphosphate
1-deoxy-D-xylulose 5-phosphate
L-xylulose 5-phosphate
D-xylulose 5-phosphate
L-ribulose 5-phosphate
D-ribulose 5-phosphate
L-ascorbate 6-phosphate
D-tagatofuranose 6-phosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-mannose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-fructofuranose
keto-D-fructose
N-acetyl-β-D-mannosamine
N-acetyl-α-D-mannosamine
N-acetyl-β-D-glucosamine
D-xylulose
XLLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
XXLG xyloglucan oligosaccharide
XXXG xyloglucan oligosaccharide
stachyose
maltotetraose
raffinose
maltotriose
maltoheptaose
maltohexaose
maltopentaose
α-maltose
melibiose
sucrose
allolactose
α-lactose
β-D-cellobiose
1-kestotriose
L-gulonate
D-glucono-1,5-lactone
formyl-CoA
oxalyl-CoA
succinyl-CoA
2-methylacetoacetyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
acetyl-CoA
3'-dephospho-CoA
crotonyl-CoA
(S)-malyl-CoA
oleoyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
(3R)-3-hydroxybutanoyl-CoA
propanoyl-CoA
butanoyl-CoA
phlorisovalerophenone
geranyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
4-prenylphlorisovalerophenone
deoxyhumulone
deoxycohumulone
betanidin
betanidin quinone
4-methylumbelliferone
scopoletin
coumarin
dioleoyl phosphatidate
1-oleoyl-2-lyso-glycerone phosphate
1-oleoyl-sn-glycerol 3-phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-octaprenyl diphosphate
geranylgeranyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
3-octaprenyl-4-hydroxybenzoate
4-hydroxybenzoate
4-tyrosol
8-hydroxypurine
6,8-dihydroxypurine
urate
3-methoxy-4-hydroxyphenylglycol
vanillyl mandelate
coumarinate
baicalein
6,7-dehydrobaicalein
(indol-3-yl)acetaldehyde
6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one
6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one
2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one
demethylmenaquinol-8
ubiquinol-8
menaquinol-8
3-demethylubiquinol-8
guanine
adenine
hypoxanthine
purine
dGMP
dAMP
dGTP
dATP
dGDP
dADP
ITP
ATP
GTP
IDP
ADP
GDP
IMP
XMP
GMP
AMP
2'-deoxyadenosine
2'-deoxyinosine
2'-deoxyguanosine
adenosine
inosine
guanosine
xanthosine
FAD
riboflavin
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
7,8-dihydroneopterin 3'-triphosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
dTDP
dUTP
uridine 2'-monophosphate
cytidine 2'-monophosphate
uridine 3'-monophosphate
cytidine-3'-monophosphate
dCMP
UTP
dUDP
dCDP
CDP
uracil
UDP
dUMP
dTMP
CTP
dCTP
dTTP
thymine
UMP
CMP
cytidine
uridine
2'-deoxycytidine
thymidine
2'-deoxyuridine
guanosine 2',3'-cyclic monophosphate
adenosine 2',3'-cyclic monophosphate
adenosine 2'-monophosphate
guanosine 2'-monophosphate
cyclic-AMP
pppGpp
adenosine 3'-monophosphate
guanosine 3'-monophosphate
adenylo-succinate
ppGpp
5'-deoxyadenosine
NAD+
NADP+
NADH
NADPH
β-nicotinamide D-ribonucleotide
5,10-methenyltetrahydrofolate mono-L-glutamate
hydrogen cyanide
2-hydroxy-2-methylpropanenitrile
(2R)-2-hydroxy-2-methylbutanenitrile
coenzyme A
(S)-NADHX
(R)-NADHX
DNA with lesion
thiamine
nicotinate
pyridoxamine
pyridoxamine 5'-phosphate
pyridoxine
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
pyridoxal
ethylphosphate
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobyrate