an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
autoinducer 2
S-ribosyl-L-homocysteine
D-gluconate 6-phosphate
DNA without lesion
O-acetyl-L-serine
hydrogen selenide
O-D-alanyl-poly(ribitol phosphate)
poly(ribitol phosphate)
4-phosphooxy-L-threonine
3-phosphooxypyruvate
(L-threonylcarbamoyl)adenylate
3-carboxy-2,5-dihydro-5-oxofuran-2-acetate
dimethylsulfoniopropanoate
4-acetamidobutanoate
4-acetamidobutanal
D-glucurono-6,3-lactone
propynoate
prop-2-ynal
3,4-dihydroxyphenylacetaldehyde
5-hydroxyindole acetate
4-imidazoleacetate
imidazole acetaldehyde
4-amino-4-deoxychorismate
5-dehydro-D-gluconate
2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
N-acetyl-L,L-2,6-diaminopimelate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
β-D-ribosylnicotinate
3-dehydroquinate
6-phospho D-glucono-1,5-lactone
2-dehydro-3-deoxy-D-gluconate 6-phosphate
oxalosuccinate
N-(5-phosphoribosyl)-anthranilate
anthranilate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate 3-phosphate
thiamine phosphate
4-amino-2-methyl-5-pyrimidinemethanol
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
7-epicholate
citrate
H2
carbon monoxide
quinolinate
2-amino-3-carboxymuconate-6-semialdehyde
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
5-amino-6-(5-phospho-D-ribosylamino)uracil
5-amino-6-(5-phospho-D-ribitylamino)uracil
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
3-methyl-2-oxobutanoate
mycothione
5-ureidoimidazole-4-carboxylate
5-aminoimidazole-4-carboxylate
4-aminoimidazole
3,5-dihydro-4H-imidazol-4-one
pseudouridine
2-iminoacetate
α-D-galacturonate 1-phosphate
L-gulono-1,4-lactone
L-xylo-hex-3-ulono-1,4-lactone
1-piperideine 6-carboxylate
L-dehydro-ascorbate
ammonia
5-hydroxyindole thiazolidine carboxylate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
dehydroascorbate (bicyclic form)
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2,3-dioxo-L-gulonate
2-carboxy-L-xylonolactone
2-carboxy-L-threo-pentonate
(S)-2-acetolactate
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
4-aminobutanoate
4-(γ-L-glutamylamino)butanoate
5-(methylsulfanyl)-α-D-ribose
S-methyl-5'-thioadenosine
(S)-dihydroorotate
P1,P4-bis(5'-guanosyl) tetraphosphate
H2O
L-selenocystathionine
hydrogen peroxide
CO2
acetyl phosphate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
thiamine diphosphate
isopentenyl diphosphate
4'-phosphopantetheine
(R)-4'-phosphopantothenoyl-L-cysteine
glycolate
xanthine
prephenate
phosphoenolpyruvate
3-keto-β-D-galactose
N,N-dimethyl-1,4-phenylenediamine
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
oxaloacetate
carbamoyl phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
2-amino-2-deoxy-D-gluconate 6-phosphate
glycerone phosphate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
5-hydroxyindole acetaldehyde
N-acetyl-D-muramate 6-phosphate
5-hydroxytryptophol
3-methoxy-4-hydroxyphenylglycolaldehyde
indole-3-glycol aldehyde
indole-3-glycol
isobutanol
3-methylbutanal
3-methylbutanol
2-methylbutanal
2-methylbutanol
2-phenylethanol
salicyl alcohol
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
isochorismate
ethanolamine
CDP-glycerol
pseudouridine 5'-phosphate
3-dehydroshikimate
shikimate
enol-phenylpyruvate
ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
(R)-5-phosphomevalonate
(R)-mevalonate
(R)-mevalonate diphosphate
prenyl diphosphate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
morphinone
2-phosphoglycolate
3-phosphonopyruvate
1,6-anhydro-N-acetyl-β-muramate
(S)-2-amino-6-oxohexanoate
α-D-glucosamine 1-phosphate
orotidine 5'-phosphate
nicotinate adenine dinucleotide
β-nicotinate D-ribonucleotide
propanoyl phosphate
phosphocholine
γ-L-glutamyl 5-phosphate
canavaninosuccinate
O-ureido-L-homoserine
L-arginino-succinate
L-canavanine
mycothiol-arsenate conjugate
(R)-4'-phosphopantothenate
(R)-pantothenate
aminoacetone
(2E,6E)-farnesyl diphosphate
L-valine
L-methionine
L-selenocysteine
L-cysteine
L-phenylalanine
glycine
L-alanine
L-tryptophan
L-leucine
L-proline
L-lysine
L,L-diaminopimelate
L-cystathionine
L-glutamate
L-glutamine
L-aspartyl-4-phosphate
L-aspartate
L-ornithine
L-asparagine
L-serine
L-tyrosine
L-threonine
L-histidine
L-arginine
N-carbamoyl-L-aspartate
L-citrulline
S-sulfo-L-cysteine
L-homoserine
L-homocysteine
O-succinyl-L-homoserine
L-aspartate 4-semialdehyde
O-phospho-L-homoserine
S-adenosyl-L-methionine
L-glutamate-5-semialdehyde
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
seleno-L-homocysteine
L-saccharopine
L-2-amino-3-oxobutanoate
N-formimino-glycine
S-methyl-L-methionine
3-phospho-L-serine
D-glutamate
D-alanine
D-aspartate
adenosine 2',3'-cyclic monophosphate
guanosine 2',3'-cyclic monophosphate
5'-deoxyadenosine
IDP
ITP
dIMP
dITP
XTP
2'-deoxyinosine
ADP
GDP
GMP
ATP
GTP
AMP
dAMP
2'-deoxyadenosine
dGMP
2'-deoxyguanosine
adenylo-succinate
ppGpp
pppGpp
cyclic-AMP
guanosine 3'-monophosphate
adenosine 3'-monophosphate
XMP
IMP
hypoxanthine
dGDP
dGTP
dADP
dATP
CDP-choline
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
ADP-α-D-glucose
GDP-α-D-glucose
GDP-α-D-mannuronate
GDP-α-D-mannose
dTDP-4-dehydro-β-L-rhamnose
dTDP-α-D-glucose
dTDP-β-L-rhamnose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-α-D-galacturonate
UDP-α-D-galactose
UDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-galactofuranose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
purine
adenine
guanine
uracil
uridine 3'-monophosphate
cytidine-3'-monophosphate
cyclic di-3',5'-guanylate
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
dUMP
dCMP
dTMP
dTDP
dUDP
dCDP
dCTP
dUTP
dTTP
UDP
CDP
β-nicotinamide D-ribonucleotide
CTP
UTP
UMP
CMP
NADP+
NAD+
NADPH
NADH
2'-deoxyuridine
2'-deoxycytidine
thymidine
inosine
adenosine
xanthosine
guanosine
uridine
cytidine
D-gluconate
L-idonate
aldehydo-L-galactonate
L-gulonate
1-(β-D ribofuranosyl)nicotinamide
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
3'-ketolactose
1-O-acetyl-α-maltose
arbutin-6-phosphate
salicin 6-phosphate
methyl β-D-glucoside 6-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
sucrose 6G-phosphate
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
sucrose 6F-phosphate
α-lactose 6'-phosphate
β-D-cellobiose 6'-phosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-erythrose 4-phosphate
4-phospho-D-erythronate
5-phospho-α-D-ribose 1-diphosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
D-fructose 6-phosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-tagatofuranose 6-phosphate
D-tagatofuranose 1,6-bisphosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-mannose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-fructofuranose
aldehydo-D-ribose
β-D-ribopyranose
β-D-ribofuranose
α-D-ribofuranose
α-D-galactopyranose
β-D-galactopyranose
β-D-glucopyranose
α-D-glucopyranose
D-glyceraldehyde
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-D-glucosamine
glycerol
D-mannitol 1-phosphate
aldehydo-D-galacturonate
XXXG xyloglucan oligosaccharide
melibiose
sucrose
α-lactose
stachyose
raffinose
XXLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
XLLG xyloglucan oligosaccharide
salicylaldehyde
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
morphine
1,2-dibutyrin
tributyrin
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
dioleoyl phosphatidate
1-oleoyl-2-lyso-glycerone phosphate
1-oleoyl-sn-glycerol 3-phosphate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
hydroquinone
3,4-dihydroxyphenylacetate
3,4-dihydroxymandelate
protocatechuate
2,3-dihydroxybenzoate
3,4-dihydroxyphenylglycolaldehyde
3,4-dihydroxyphenylglycol
butan-1-ol
ethanol
propan-1-ol
phytol
methanol
(2E,6E)-farnesal
methylglyoxal
benzaldehyde
(4-hydroxyphenyl)acetaldehyde
phenylacetaldehyde
phytenal
(S)-lactaldehyde
1-octanal
butan-1-al
acetaldehyde
1-propanal
isobutanal
(R)-acetoin
diacetyl
pyruvate
glyoxylate
2-oxoglutarate
4-(methylsulfanyl)-2-oxobutanoate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
salicylate
4-aminobenzoate
benzoate
acetate
orotate
aldehydo-D-glucuronate
(S)-1-pyrroline-5-carboxylate
butanoate
octanoate
phytenate
(2E,6E)-farnesoate
3-oxoadipate
formate
(S)-lactate
(R)-lactate
(R)-glycerate
3-carboxy-cis,cis-muconate
cis-aconitate
D-threo-isocitrate
(3E)-2-oxohex-3-enedioate
chorismate
D-glucarate
succinate
fumarate
(S)-malate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
urate
6,8-dihydroxypurine
8-hydroxypurine
4-tyrosol
aniline
4-methylphenol
(indol-3-yl)acetaldehyde
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
vanillyl mandelate
3-methoxy-4-hydroxyphenylglycol
7,8-dihydropteroate
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
riboflavin
FAD
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
nicotinate
nicotinamide
thiamine
L-ascorbate
pyridoxine
pyridoxal
pyridoxamine
pyridoxal 5'-phosphate
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
coenzyme A
(R)-NADHX
(S)-NADHX
D-glucono-1,5-lactone
L-galactono-1,4-lactone
(S)-3-hydroxy-3-methylglutaryl-CoA
succinyl-CoA
3'-dephospho-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
acetyl-CoA
malonyl-CoA
2-methylacetoacetyl-CoA
oleoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
hexadecanedioyl-CoA
butanoyl-CoA
propanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
crotonyl-CoA
(indol-3-yl)acetate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
cholate
glycocholate
isocholate
3-dehydrocholate
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
choline
spermidine
putrescine
2-aminoprop-2-enoate
2-iminopropanoate
2-iminosuccinate
monodehydroascorbate radical
N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine
N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
N-acetyl-L-glutaminyl-L-glutamine amide
N-acetyl-L-glutaminyl-L-glutamine
L-alanyl-D-glutamate
glycyl-L-methionine
L-alanyl-L-aspartate
L-alanyl-L-glutamine
L-alanyl-glycine
L-alanyl-L-histidine
L-alanyl-L-leucine
L-alanyl-L-threonine
L-alanyl-L-glutamate
glycyl-L-asparagine
glycyl-L-glutamine
glycyl-L-glutamate
glycyl-L-aspartate
glycyl-L-proline
L-cysteinylglycine
D-alanyl-D-alanine
L-methionyl-L-alanine dipeptide
trimethyl sulfonium
selenide
thiosulfate
hydrogencarbonate
arsenate
phosphonate
phosphate
diphosphate
H+
ammonium
Ca2+
Mg2+
Cu2+
Cd2+
3-dimethylsulfoniopropionaldehyde
dimethyl sulfide
3-(methylsulfanyl)propanal
methionol
3-sulfopyruvate
L-cysteate
4-methyl-5-(2-phosphooxyethyl)thiazole
5-(2-hydroxyethyl)-4-methylthiazole
mycothiol
5,10-methenyltetrahydrofolate mono-L-glutamate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
α-D-glucosamine 6-phosphate
4-dimethylaminophenylazobenzene
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
hydrogen sulfide
oxygen
adenosylcobyrate
adenosyl-cob(III)yrinate a,c-diamide
DNA with lesion