ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C3850

5-amino-6-(D-ribitylamino)uracil

C13799

2-methylbutanol

C8672

trimethylamine

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C12125

imidazole acetol-phosphate

C8344

indole-3-glycol

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C2346

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C6444

oxaloacetate

C1417

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

C13716

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

C11483

glycolate

C11874

N-succinyl-2-amino-6-ketopimelate

C1353

3-phosphooxypyruvate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C11838

2-succinylbenzoate

C6099

lipid IVA

C12494

N-acetyl-D-muramate 6-phosphate

C12044

L-histidinol phosphate

C11767

porphobilinogen

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C142

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

C11873

N-succinyl-L,L-2,6-diaminopimelate

C927

carbon monoxide

C10261

ADP-L-glycero-β-D-manno-heptose

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C2191

carbamoyl phosphate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C12056

L-arginino-succinate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C6369

(S)-2-aceto-2-hydroxybutanoate

C1024

aminoacetone

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C13851

hydrogenobyrinate

C12102

isobutanol

C3684

3-deoxy-α-D-manno-2-octulosonate

C11479

phosphoenolpyruvate

C12350

7,8-diaminopelargonate

C1538

2-C-methyl-D-erythritol 4-phosphate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C1184

5-phospho-β-D-ribosylamine

C11652

shikimate 3-phosphate

C13850

hydrogenobyrinate a,c-diamide

C12139

preuroporphyrinogen

C12492

1,6-anhydro-N-acetyl-β-muramate

C11857

β-nicotinate D-ribonucleotide

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C6361

acetoacetate

C13824

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

C11946

N-(5-phosphoribosyl)-anthranilate

C12164

H2

C12192

carbonic acid

C11634

tartronate semialdehyde

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C13281

1,4-dihydroxy-2-naphthoyl-CoA

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C423

3-methoxy-4-hydroxyphenylglycolaldehyde

C11826

oxalosuccinate

C11606

thiamine phosphate

C13854

hydrogen selenide

C4676

glutathionylspermidine

C12394

6-phospho D-glucono-1,5-lactone

C13946

5-(methylsulfanyl)-α-D-ribose

C1102

O-acetyl-L-serine

C11802

4'-phosphopantetheine

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C446

5-hydroxyindole thiazolidine carboxylate

C1325

4-amino-4-deoxychorismate

C12352

(S)-dihydroorotate

C1196

S-methyl-5'-thioadenosine

C928

CO2

C571

4-hydroxy-2-nonenal

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C12048

γ-L-glutamyl 5-phosphate

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C12029

S-ribosyl-L-homocysteine

C6030

core oligosaccharide-lipid A (E. coli K-12 core type)

C11836

hydroxypyruvate

C11832

orotidine 5'-phosphate

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C6359

(S)-2-acetolactate

C8399

5-hydroxytryptophol

C184

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

C12096

isochorismate

C11604

thiamine diphosphate

C12392

D-glycero-β-D-manno-heptose 1,7-bisphosphate

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C12162

hydrogen peroxide

C12355

dethiobiotin

C11800

(R)-pantothenate

C8410

indole-3-glycol aldehyde

C352

2-iminoacetate

C12390

D-erythro-imidazole-glycerol-phosphate

C14084

2-(sulfomethyl)thiazolidine-4-carboxylate

C11976

2-methylbutanal

C8407

5-hydroxyindole acetaldehyde

C1002

anthranilate

C183

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

C932

canavaninosuccinate

C13283

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

C12364

isopentenyl diphosphate

C13950

pimeloyl-CoA

C11653

shikimate

C1268

(R)-4'-phosphopantothenate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C2364

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

C12176

histidinol

C12214

(S)-4-amino-5-oxopentanoate

C12325

1,4-dihydroxy-2-naphthoate

C185

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

C12274

enol-phenylpyruvate

C1445

adenosine 3',5'-bisphosphate

C12393

D-glycero-β-D-manno-heptose 1-phosphate

C3343

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

C11654

selenophosphate

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C191

L-selenocystathionine

C14436

pimelate

C3344

2-dehydro-3-deoxy-D-gluconate

C12369

3-dehydroquinate

C11539

xanthine

C891

citrate

C1130

8-amino-7-oxononanoate

C12178

histidinal

C2580

methylsalicylate

C2331

(enterobacterial common antigen)-undecaprenyl diphosphate

C10260

ADP-D-glycero-β-D-manno-heptose

C6614

O-ureido-L-homoserine

C6574

(S)-ureidoglycolate

C1631

3-amino-1-hydroxyacetone 1-phosphate

C186

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

C1265

4-phosphooxy-L-threonine

C1231

5-aminolevulinate

C1010

ammonia

C14074

prenyl diphosphate

C1553

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

C933

L-canavanine

C15056

salicyl alcohol

C3417

(S)-3-methyl-2-oxopentanoate

C187

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C1108

acetyl phosphate

C3264

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

C949

lipid X

C13800

3-methylbutanol

C6585

N-carbamoyl-2-oxoglycine

C11760

prephenate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C11543

H2O

C11932

N-acetyl-D-galactosamine 6-phosphate

C13284

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C873

coproporphyrinogen III

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C193

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

C1431

3-dehydroshikimate

C10349

glycerone phosphate

C11493

2-phosphoglycolate

C3262

3-methyl-2-oxobutanoate

C295

(R)-4-phosphopantoate

C8333

(indol-3-yl)pyruvate

C12218

α-D-glucosamine 1-phosphate

C13798

2-phenylethanol

C194

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C14216

3-keto-L-gulonate 6-phosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C15282

D-galactosamine-6-phosphate

C11824

oxamate

C12078

itaconate

C12848

N5-carboxyaminoimidazole ribonucleotide

C12324

autoinducer 2

C4674

glutathione disulfide

C12333

dihydrolipoamide

C13801

3-methylbutanal

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C188

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C3319

4-methyl-2-oxopentanoate

C3376

(S)-4-hydroxy-2-oxohexanoate

C2470

sulfoethylcysteine

C15308

trimethylamine N-oxide

C12020

lipoamide

C3656

D-gluconate 6-phosphate

C10794

lipid A disaccharide (E. coli)

C1689

trimethyl sulfonium

C7057

molybdate

C7028

nitrite

C7036

hydrogencarbonate

C7030

nitrate

C7024

thiosulfate

C7016

sulfite

C7034

hydrogensulfite

C7025

OH-

C7022

selenide

C7014

sulfate

C8958

superoxide

C6097

phosphate

C6093

diphosphate

C7006

chloride

C7002

fluoride

C7864

Fe3+

C11005

Zn2+

C11023

Fe2+

C11011

Cu2+

C11007

Ni2+

C11006

Co2+

C4320

H+

C4328

ammonium

C6644

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

C10988

riboflavin

C10982

nicotinate

C10994

thiamine

C10986

L-ascorbate

C10966

all-trans-retinol

C4200

pyridoxal

C4208

pyridoxine

C4214

pyridoxine 5'-phosphate

C4210

pyridoxal 5'-phosphate

C4216

pyridoxamine

C4188

pyridoxamine 5'-phosphate

C10597

7,8-dihydrofolate monoglutamate

C7134

tetrahydropteroyl tri-L-glutamate

C7129

5,6,7,8-tetrahydrofolate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C4334

1-oleoyl-2-palmitoyl-phosphatidylglycerol

C6290

(S)-3-hydroxy-isobutanoate

C6043

4-methylphenol

C12247

L-homocysteine

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C4520

(25S)-3-oxocholest-4-en-26-oate

C4572

(25S)-3-oxocholest-4-en-26-oyl-CoA

C10548

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

C10544

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

C10545

9α-hydroxyandrosta-1,4-diene-3,17-dione

C10542

androst-4-ene-3,17-dione

C10538

androsta-1,4-diene-3,17-dione

C3536

L-α-amino-ε-keto-pimelate

C11441

β-alanine

C11433

(S)-3-amino-2-methylpropanoate

C5609

L-glutamine

C12067

glycine

C5579

L-serine

C5581

L-proline

C5597

L-alanine

C5588

L-leucine

C12303

L-citrulline

C2469

L-phenylalanine

C5584

L-lysine

C5642

L-arginine

C5612

L-cysteine

C5575

L-tryptophan

C5643

L-asparagine

C5603

L-isoleucine

C5577

L-threonine

C5596

L-aspartate

C5607

L-glutamate

C5583

L-methionine

C5573

L-tyrosine

C5571

L-valine

C5605

L-histidine

C12227

O-succinyl-L-homoserine

C2426

S-sulfo-L-cysteine

C12239

L-aspartate 4-semialdehyde

C12233

L-glutamate-5-semialdehyde

C12245

L-homoserine

C12231

L-ornithine

C12229

O-phospho-L-homoserine

C12203

S-adenosyl-L-homocysteine

C12255

L-cystine

C15292

S-adenosyl-L-methionine

C12237

L-canaline

C2488

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

C5592

L-selenocysteine

C5585

meso-diaminopimelate

C12063

seleno-L-homocysteine

C12061

L-selenomethionine

C12073

L-aspartyl-4-phosphate

C12201

L-2-amino-3-oxobutanoate

C3402

3-phospho-L-serine

C11955

O-acetyl-L-homoserine

C12047

4-fluorothreonine

C13322

N-carbamoyl-L-aspartate

C8797

D-glutamate

C8799

D-alanine

C8805

D-aspartate

C5580

L,L-diaminopimelate

C5595

L-cystathionine

C11429

salicylate

C8974

4-aminobenzoate

C8950

chorismate

C6443

fumarate

C6442

succinate

C2802

(S)-malate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C3412

decanoate

C3409

octanoate

C11517

acetate

C3308

pyruvate

C3421

formate

C3418

butanoate

C6186

(S)-lactate

C6185

(R)-lactate

C3345

3-phenyl-2-oxopropanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C11476

(R)-glycerate

C11481

orotate

C11509

fluoroacetate

C11487

D-mannonate

C4985

(S)-1-pyrroline-5-carboxylate

C3301

2-oxoglutarate

C3351

glyoxylate

C3257

2-oxobutanoate

C3383

palmitate

C2774

pristanate

C13210

oleate

C6379

linoleate

C10572

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

C10590

α-linolenate

C13266

(15Z)-tetracosenoate

C13260

phytenate

C4606

S-(hydroxymethyl)glutathione

C4734

dimethyl sulfide

C4704

methionol

C4768

3-(methylsulfanyl)propanal

C4678

glutathione

C4580

(R)-S-lactoylglutathione

C3978

thiocyanate

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C12629

coenzyme M

C12623

sulfoacetaldehyde

C12637

3-sulfopyruvate

C2209

(2R)-3-sulfolactate

C7994

(2R)-phospho-3-sulfolactate

C7666

protoporphyrinogen IX

C7658

uroporphyrinogen-III

C7676

protoporphyrin IX

C7662

uroporphyrinogen-I

C7672

coproporphyrinogen I

C6624

protoheme

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C4632

(glutathion-S-yl)-4-hydroxy-2-nonenal

C2858

glycolaldehyde

C2860

fluoroacetaldehyde

C3641

(4-hydroxyphenyl)acetaldehyde

C3647

phenylacetaldehyde

C6090

methylglyoxal

C2063

β-D-ribopyranose

C2062

β-D-ribofuranose

C2069

α-D-xylopyranose

C9494

D-glyceraldehyde

C7085

β-D-glucopyranose

C7087

α-D-glucopyranose

C2108

β-D-galactopyranose

C2109

α-D-galactopyranose

C3485

butan-1-al

C3494

isobutanal

C3483

formaldehyde

C3500

acetaldehyde

C3523

1-propanal

C6246

(S)-lactaldehyde

C14804

phytenal

C5468

ubiquinone-8

C2040

diacetyl

C8965

hydroxyl radical

C13422

hydrogen cyanide

C13354

preQ0

C13114

1-chloro-2,4-dinitrobenzene

C4658

2,4-dinitrophenyl-S-glutathione

C11516

glycine betaine

C3574

spermidine

C3548

putrescine

C8419

sn-glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6427

2,3-diphospho-D-glycerate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C9098

methyl (indol-3-yl)acetate

C9096

(indol-3-yl)acetate

C6763

(R)-methylmalonate-semialdehyde

C6741

(S)-methylmalonate-semialdehyde

C9861

cobyrinate

C9828

cob(II)yrinate a,c-diamide

C3587

benzyl alcohol

C14807

phytol

C3449

butan-1-ol

C3450

ethanol

C3447

propan-1-ol

C3673

D-mannitol 1-phosphate

C6561

D-mannitol

C2763

3,4-dihydroxyphenylglycol

C2758

3,4-dihydroxyphenylglycolaldehyde

C10527

myo-inositol

C10519

1-keto-D-chiro-inositol

C13573

1D-myo-inositol 3-monophosphate

C3448

methanol

C4086

1-(β-D ribofuranosyl)nicotinamide

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C6673

sucrose 6F-phosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C15289

D-sedoheptulose 7-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10340

D-erythrose 4-phosphate

C10356

4-phospho-D-erythronate

C2057

α-D-ribose-1-phosphate

C7312

5-fluoro-5-deoxy-D-ribulose 1-phosphate

C7314

5-fluoro-5-deoxy-D-ribose 1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8811

α-D-glucopyranose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8701

L-xylulose 5-phosphate

C10607

L-ribulose 5-phosphate

C10604

D-ribulose 5-phosphate

C8700

aldehydo-D-arabinose 5-phosphate

C10324

D-tagatofuranose 1,6-bisphosphate

C10326

β-D-fructose 1,6-bisphosphate

C10325

L-ascorbate 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C8666

UDP-α-D-galactose

C10381

a peptidoglycan dimer (mycobacteria)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10372

a peptidoglycan dimer (S. aureus)

C10379

a peptidoglycan dimer (E. faeciums)

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10364

a peptidoglycan with D,D cross-links (mycobacteria)

C10383

a peptidoglycan with L,D cross-links (mycobacteria)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C3126

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C5615

D-glyceraldehyde 3-phosphate

C10263

ADP-α-D-glucose

C1939

dTDP-α-D-glucose

C1963

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7822

UDP-N-acetyl-α-D-muramate

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C5849

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C7790

UDP-N-acetyl-α-D-mannosamine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C8547

UDP-N-acetyl-α-D-mannosaminuronate

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C1009

GDP-α-D-mannose

C9884

ADP-D-ribose

C8305

CMP-3-deoxy-β-D-manno-octulosonate

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5286

N-acetyl-β-D-glucosamine

C14480

N-acetyl-α-D-glucosamine

C2143

D-xylulose

C10688

maltotriose

C10229

galactosyl-glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate

C10235

heptosyl-Kdo2-lipid A

C10234

(heptosyl)2-Kdo2-lipid A

C10226

α-Kdo-(2→6)-lipid IVA

C10224

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

C10255

4-O-phospho-α-Kdo-(2→6)-lipid IVA

C6026

galactosyl-(glucosyl)3-(heptosyl)3-Kdo2-lipid A-bisphosphate

C10230

glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate

C10231

glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate

C10232

glucosyl-(heptosyl)2-Kdo2-lipid A-phosphate

C10233

glucosyl-(heptosyl)2-Kdo2-lipid A

C10223

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA

C10689

maltotetraose

C10691

maltohexaose

C10692

maltoheptaose

C10693

sucrose

C7306

5'-deoxy-5'-fluoroadenosine

C5546

5'-chloro-5'-deoxyadenosine

C11254

5-chloro-5-deoxyribose 1-phosphate

C7783

dATP

C7647

8-oxo-dGTP

C7844

ATP

C7743

dAMP

C7813

2'-deoxyadenosine

C7655

8-oxo-GTP

C10288

adenylo-succinate

C7848

2'-deoxyguanosine

C7809

AMP

C7751

dGTP

C7741

IMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7785

hypoxanthine

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C7745

GTP

C10266

ppGpp

C7757

ADP

C7795

GDP

C7823

dADP

C7759

ITP

C7817

IDP

C7827

GMP

C7652

cyclic-AMP

C7811

XMP

C5552

5'-deoxyadenosine

C7807

dGDP

C10267

pppGpp

C7755

2'-deoxyinosine

C14500

NADH

C14497

NADPH

C4020

NAD+

C4018

NADP+

C8761

CTP

C8760

UTP

C2245

CMP

C2241

UMP

C8714

UDP

C8732

CDP

C4240

reduced β-nicotinamide D-ribonucleotide

C4243

β-nicotinamide D-ribonucleotide

C8752

dUDP

C8733

dCDP

C8720

dTDP

C8772

dCTP

C8724

dUTP

C8764

dTTP

C8770

dUMP

C8744

dTMP

C8755

dCMP

C2519

thymidine

C2527

2'-deoxyuridine

C2523

2'-deoxycytidine

C2702

cytidine

C2706

uridine

C15091

inosine

C15085

guanosine

C15088

adenosine

C15094

xanthosine

C1804

P1,P4-bis(5'-adenosyl) tetraphosphate

C9454

adenine

C9455

guanine

C10601

thymine

C8707

cytosine

C8739

uracil

C9540

preQ1

C7118

hydrogen sulfide

C7121

oxygen

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C7013

benzyl-6-hydroxy-2-cyclohexene-on-oyl

C3093

urate

C7139

4-tyrosol

C6934

4-hydroxybenzoate

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C12836

phenol

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C9501

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

C5543

ubiquinol-8

C1863

demethylmenaquinol-8

C1867

3-demethylubiquinol-8

C8490

3-methoxy-4-hydroxyphenylglycol

C5904

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

C10025

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

C9077

(2E,6E)-farnesyl diphosphate

C9075

mono-trans,octa-cis-decaprenyl diphosphate

C9304

trans,octacis-decaprenyl phosphate

C8321

geranyl diphosphate

C3727

all-trans-retinyl palmitate

C5383

all-trans-octaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C6617

N-acetyl-D-mannosamine 6-phosphate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C15310

L-Ala-D-Glu-meso-A2pm

C1434

D-alanyl-D-alanine

C8518

γ-L-glutamyl-L-cysteine

C6766

dTDP-4-amino-4,6-dideoxy-α-D-galactose

C668

iron(III) dicitrate

C10052

FMN

C10053

FAD

C10049

FMNH2

C10050

FADH2

C5392

(S)-NADHX

C5394

(R)-NADHX

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C12730

7,8-dihydroneopterin 3'-triphosphate

C12664

7,8-dihydroneopterin

C12696

7,8-dihydromonapterin

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12678

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12708

7,8-dihydroneopterin 3'-phosphate

C10609

7,8-dihydropteroate

C10614

coenzyme A

C5282

itaconyl-CoA

C5182

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

C5313

2-methylbutanoyl-CoA

C5186

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

C5285

(E)-2-methylcrotonoyl-CoA

C4901

succinyl-CoA

C5315

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

C4937

3'-dephospho-CoA

C5298

acetyl-CoA

C4915

α-linolenoyl-CoA

C4911

methylacrylyl-CoA

C5056

linoleoyl-CoA

C5314

2-methylacetoacetyl-CoA

C4913

malonyl-CoA

C4922

isobutanoyl-CoA

C7343

(S)-malyl-CoA

C1337

crotonyl-CoA

C11400

phytenoyl-CoA

C11197

(S)-3-hydroxy-isobutanoyl-CoA

C5635

oleoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C14697

decanoyl-CoA

C14677

octanoyl-CoA

C2873

pristanoyl-CoA

C5892

palmitoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C6562

hexadecanedioyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA