ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C1553

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

C12230

formamide

C1078

(S)-2-amino-6-oxohexanoate

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C996

adenosine 5'-phosphosulfate

C12029

S-ribosyl-L-homocysteine

C12324

autoinducer 2

C183

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

C186

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

C187

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C188

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C194

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

C193

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

C3376

(S)-4-hydroxy-2-oxohexanoate

C1417

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

C12415

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

C12626

3-oxo-5,6-didehydrosuberyl-CoA

C12628

2-oxepin-2(3H)-ylideneacetyl-CoA

C12630

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

C15180

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

C13929

cyclohexane-1-carbonyl-CoA

C13930

cyclohexane-1-carboxylate

C1357

3-oxopimeloyl-CoA

C1399

3-hydroxypimeloyl-CoA

C1148

6-oxocyclohex-1-ene-1-carbonyl-CoA

C1155

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

C12402

cyclohex-1,5-diene-1-carbonyl-CoA

C12407

crotonate

C15156

dialurate

C12492

1,6-anhydro-N-acetyl-β-muramate

C352

2-iminoacetate

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C12342

diethylphosphate

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C14495

3-hydroxy-5- oxohexanoyl-CoA

C14754

3-hydroxy-5-oxohexanoate

C15072

dihydrophloroglucinol

C15155

phloroglucinol

C11743

pyrogallol

C1580

1,2,3,5-tetrahydroxybenzene

C14907

gallate

C15181

(S)-5-amino-3-oxohexanoate

C623

(3S,5S)-3,5-diaminohexanoate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C15304

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

C1550

2-amino-3-carboxymuconate-6-semialdehyde

C12756

(2R)-2-amino-4-oxopentanoate

C11826

oxalosuccinate

C1010

ammonia

C8938

oxalate

C12254

ethanolamine

C1528

2-dehydropantoate

C11653

shikimate

C11723

L-quinate

C4674

glutathione disulfide

C1223

5-aminopentanoate

C14180

dihydrolipoate

C1002

anthranilate

C11715

quinolinate

C3279

2-oxopent-4-enoate

C11483

glycolate

C11802

4'-phosphopantetheine

C1108

acetyl phosphate

C11754

propanoyl phosphate

C1440

nigerose

C11760

prephenate

C15327

2,5-diaminohexanoate

C12394

6-phospho D-glucono-1,5-lactone

C1098

acrylamide

C1096

acrylate

C1303

4-guanidinobutyramide

C13919

4-guanidinobutanoate

C8366

(indol-3-yl)acetamide

C11756

propionamide

C1198

5-dehydro-4-deoxy-D-glucarate

C1457

(2R,4S)-2, 4-diaminopentanoate

C3821

5-methylcytosine

C13681

5-carboxymethyl-2-hydroxymuconate

C11604

thiamine diphosphate

C933

L-canavanine

C6597

3-ureidopropanoate

C4883

2-oleoylglycerol

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C13284

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

C11838

2-succinylbenzoate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11606

thiamine phosphate

C10261

ADP-L-glycero-β-D-manno-heptose

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C6099

lipid IVA

C142

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

C8210

5-dehydro-2-deoxy-D-gluconate

C8191

5-dehydro-2-deoxy-D-gluconate 6-phosphate

C11836

hydroxypyruvate

C14111

4-pyridoxolactone

C1321

4-aminobutanoate

C11639

succinate semialdehyde

C6349

3-oxopropanoate

C651

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

C185

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

C184

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

C12288

(E)-2-benzylidenesuccinyl-CoA

C922

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

C371

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

C2586

(E)-4-coumaroyl-CoA

C15306

2,3-didehydroadipyl-CoA

C855

coenzyme F390-A

C13970

β-D-fructose 2,6-bisphosphate

C370

(S)-mandelate

C382

(R)-mandelate

C12096

isochorismate

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C13895

(2,3-dihydroxybenzoyl)adenylate

C12005

(L-aspartyl)adenylate

C12352

(S)-dihydroorotate

C13854

hydrogen selenide

C1102

O-acetyl-L-serine

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C1633

(R)-1-aminopropan-2-ol

C1038

α-ribazole

C11711

(R)-1-amino-2-propanol O-2-phosphate

C12192

carbonic acid

C3482

dihydroxyacetone

C12375

2-deoxygluconate

C12374

3-dehydro-2-deoxy-D-gluconate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C7865

urea

C13928

urea-1-carboxylate

C1325

4-amino-4-deoxychorismate

C14218

L-β-lysine

C3629

vanillin

C232

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

C2325

α-D-galactosyl-diphosphoundecaprenol

C12494

N-acetyl-D-muramate 6-phosphate

C11932

N-acetyl-D-galactosamine 6-phosphate

C15282

D-galactosamine-6-phosphate

C592

pseudaminate

C13627

DNA without lesion

C853

(5S)-5-benzyl-hydantoin

C851

(5R)-5-benzyl-hydantoin

C12164

H2

C927

carbon monoxide

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C8399

5-hydroxytryptophol

C8407

5-hydroxyindole acetaldehyde

C423

3-methoxy-4-hydroxyphenylglycolaldehyde

C8344

indole-3-glycol

C8410

indole-3-glycol aldehyde

C12102

isobutanol

C13800

3-methylbutanol

C13801

3-methylbutanal

C13799

2-methylbutanol

C11976

2-methylbutanal

C13798

2-phenylethanol

C13638

N2-succinyl-L-glutamate 5-semialdehyde

C11869

N2-succinylglutamate

C14179

4-acetamidobutanal

C14137

4-acetamidobutanoate

C12315

5,6-dimethylbenzimidazole

C1036

α-ribazole 5'-phosphate

C13716

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

C13851

hydrogenobyrinate

C13850

hydrogenobyrinate a,c-diamide

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C12044

L-histidinol phosphate

C12125

imidazole acetol-phosphate

C12390

D-erythro-imidazole-glycerol-phosphate

C12162

hydrogen peroxide

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C873

coproporphyrinogen III

C6361

acetoacetate

C12340

diethylthiophosphate

C15238

5-deoxy-α-ribose 1-phosphate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C3417

(S)-3-methyl-2-oxopentanoate

C11800

(R)-pantothenate

C1268

(R)-4'-phosphopantothenate

C3656

D-gluconate 6-phosphate

C3684

3-deoxy-α-D-manno-2-octulosonate

C949

lipid X

C10794

lipid A disaccharide (E. coli)

C10349

glycerone phosphate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C11634

tartronate semialdehyde

C1538

2-C-methyl-D-erythritol 4-phosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C12369

3-dehydroquinate

C1431

3-dehydroshikimate

C3262

3-methyl-2-oxobutanoate

C14145

3-deoxy-D-glycero-2,5-hexodiulosonate

C14436

pimelate

C13950

pimeloyl-CoA

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C1631

3-amino-1-hydroxyacetone 1-phosphate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C3319

4-methyl-2-oxopentanoate

C506

3-ethylmalate

C3259

2-oxovalerate

C1438

(2S)-2-isopropylmalate

C13417

2-isopropylmaleate

C1530

(2R,3S)-3-isopropylmalate

C12214

(S)-4-amino-5-oxopentanoate

C12139

preuroporphyrinogen

C1231

5-aminolevulinate

C11767

porphobilinogen

C12218

α-D-glucosamine 1-phosphate

C11654

selenophosphate

C12048

γ-L-glutamyl 5-phosphate

C11857

β-nicotinate D-ribonucleotide

C9422

nicotinate adenine dinucleotide

C1285

4-imidazolone-5-propanoate

C11557

urocanate

C1130

8-amino-7-oxononanoate

C3264

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

C12350

7,8-diaminopelargonate

C12355

dethiobiotin

C891

citrate

C939

butanoyl phosphate

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C11652

shikimate 3-phosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C11479

phosphoenolpyruvate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C3343

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

C1265

4-phosphooxy-L-threonine

C1353

3-phosphooxypyruvate

C6614

O-ureido-L-homoserine

C932

canavaninosuccinate

C12056

L-arginino-succinate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C11930

N-acetylglutamyl-phosphate

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1196

S-methyl-5'-thioadenosine

C1184

5-phospho-β-D-ribosylamine

C12178

histidinal

C12176

histidinol

C3344

2-dehydro-3-deoxy-D-gluconate

C2191

carbamoyl phosphate

C11832

orotidine 5'-phosphate

C11946

N-(5-phosphoribosyl)-anthranilate

C11635

L-tartrate

C6444

oxaloacetate

C928

CO2

C11543

H2O

C11539

xanthine

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C435

bisorganyltrisulfane

C12274

enol-phenylpyruvate

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C446

5-hydroxyindole thiazolidine carboxylate

C3290

4-oxalocrotonate

C3355

(3E)-2-oxopent-3-enoate

C13855

(2E)-2-hydroxypenta-2,4-dienoate

C1271

4-oxoglutaramate

C13702

1-piperideine 6-carboxylate

C8543

cyanophycin primer-L-aspartate

C8539

cyanophycin primer

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C8496

N-acetyl-L-glutaminyl-L-glutamine

C8498

N-acetyl-L-glutaminyl-L-glutamine amide

C1434

D-alanyl-D-alanine

C6596

2-iminosuccinate

C6599

2-iminobutanoate

C6708

2-iminopropanoate

C10799

DNA with lesion

C11480

phenylacetate

C803

ethylphosphate

C9860

131-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

C9817

3,8-divinyl protochlorophyllide a

C9812

magnesium-protoporphyrin IX 13-monomethyl ester

C9835

131-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

C9850

chlorophyllide a

C9836

protochlorophyllide a

C9821

cobalt-factor III

C9837

cobalt-precorrin-7

C9866

cobalt-precorrin-8

C9842

cobalt-precorrin-6B

C9822

cobalt-precorrin-3

C9847

cobalt-precorrin-4

C9845

cobalt-sirohydrochlorin

C9799

cobalt-precorrin-2

C9818

cobalt-precorrin-6A

C9871

cobalt-precorrin-5A

C9813

cobalt-precorrin-5B

C9855

adenosyl-cobinamide phosphate

C9800

adenosylcobyrate

C9830

adenosylcobinamide-GDP

C1218

adenosylcobalamin 5'-phosphate

C9823

cob(I)yrinate a,c-diamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9869

cob(I)inamide

C9807

adenosylcobinamide

C9874

cob(I)alamin

C5221

adenosylcobalamin

C9865

Mg-protoporphyrin

C9811

cob(II)yrinate c-monoamide

C9828

cob(II)yrinate a,c-diamide

C9861

cobyrinate

C6624

protoheme

C7116

nitrous oxide

C2255

N2

C7662

uroporphyrinogen-I

C7672

coproporphyrinogen I

C7676

protoporphyrin IX

C7658

uroporphyrinogen-III

C7666

protoporphyrinogen IX

C7632

siroheme

C7121

oxygen

C7118

hydrogen sulfide

C11281

2-chloroacetate

C8419

sn-glycerol 3-phosphate

C6436

2-O-(α-D-glucopyranosyl)-D-glycerate

C6431

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

C6432

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

C6437

3-phospho-D-glyceroyl-phosphate

C6435

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

C6427

2,3-diphospho-D-glycerate

C11476

(R)-glycerate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C2017

α-D-glucosamine 6-phosphate

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6766

dTDP-4-amino-4,6-dideoxy-α-D-galactose

C6741

(S)-methylmalonate-semialdehyde

C6763

(R)-methylmalonate-semialdehyde

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6293

3-(all-trans-octaprenyl)benzene-1,2-diol

C6290

(S)-3-hydroxy-isobutanoate

C6287

2-octaprenylphenol

C6277

2-methoxy-6-(all-trans-octaprenyl)phenol

C8186

(R)-2-hydroxyglutarate

C6309

(S)-4-hydroxymandelate

C6311

(R)-4-hydroxymandelate

C8962

nitric oxide

C8958

superoxide

C12856

parathion

C12862

4-nitrophenol

C4734

dimethyl sulfide

C4704

methionol

C4768

3-(methylsulfanyl)propanal

C4606

S-(hydroxymethyl)glutathione

C3998

methanethiol

C4678

glutathione

C4644

S-sulfanylglutathione

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C4580

(R)-S-lactoylglutathione

C4318

K+

C4320

H+

C4328

ammonium

C11023

Fe2+

C10999

Cd2+

C11006

Co2+

C11009

Mg2+

C11007

Ni2+

C1689

trimethyl sulfonium

C7016

sulfite

C7028

nitrite

C7030

nitrate

C7017

selenite

C7020

selenate

C7052

trithionate

C7025

OH-

C7034

hydrogensulfite

C7022

selenide

C7024

thiosulfate

C7036

hydrogencarbonate

C7014

sulfate

C6762

phosphonate

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C7006

chloride

C6524

2-aminoprop-2-enoate

C6526

(2Z)-2-aminobut-2-enoate

C3548

putrescine

C3574

spermidine

C13166

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C11220

glycerophosphoglycerol

C11219

glycerophosphoserine

C11222

sn-glycero-3-phosphoethanolamine

C11510

5-chloro-5-deoxy-D-ribonate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C7869

acetamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C10996

nicotinamide

C6043

4-methylphenol

C12247

L-homocysteine

C4513

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

C4560

3,24-dioxocholest-4-en-26-oyl-CoA

C10548

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

C10544

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

C10545

9α-hydroxyandrosta-1,4-diene-3,17-dione

C10538

androsta-1,4-diene-3,17-dione

C10542

androst-4-ene-3,17-dione

C9096

(indol-3-yl)acetate

C5014

phenylacetyl-CoA

C5313

2-methylbutanoyl-CoA

C4924

glutaryl-CoA

C2242

(S)-3-aminobutanoyl-CoA

C4933

formyl-CoA

C4907

oxalyl-CoA

C5302

4-hydroxybutanoyl-CoA

C5292

β-alanyl-CoA

C5296

acryloyl-CoA

C4981

CoA-disulfide

C4937

3'-dephospho-CoA

C4913

malonyl-CoA

C4915

α-linolenoyl-CoA

C5056

linoleoyl-CoA

C5304

(3S)-citryl-CoA

C5182

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

C5186

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

C5314

2-methylacetoacetyl-CoA

C5276

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

C5270

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

C5263

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

C4911

methylacrylyl-CoA

C4945

(2E,5Z)-tetradecenoyl-CoA

C5278

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

C5279

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

C5272

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

C5274

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

C5265

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

C5266

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

C5315

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

C5310

3-hydroxyisovaleryl-CoA

C5285

(E)-2-methylcrotonoyl-CoA

C5123

2-trans,6-cis-tridecadienoyl-CoA

C5143

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

C5137

(3E)-undec-2-enoyl-CoA

C5135

(3R)-hydroxy-undecanoyl-CoA

C5117

2-trans-6-trans-tridecadienoyl-CoA

C5144

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

C5128

2-trans, 4-trans-undecadienoyl-CoA

C5127

(3R)-hydroxy, 4-trans-undecenoyl-CoA

C5125

2-trans-nonenoyl-CoA

C5133

(3R)-hydroxy-nonanoyl-CoA

C5308

(3S)-hydroxyadipyl-CoA

C5316

(R)-2-hydroxyglutaryl-CoA

C4927

(E)-glutaconyl-CoA

C4922

isobutanoyl-CoA

C4901

succinyl-CoA

C5298

acetyl-CoA

C5919

(S)-methylmalonyl-CoA

C5920

(R)-methylmalonyl-CoA

C1337

crotonyl-CoA

C11400

phytenoyl-CoA

C6146

(2E)-octadec-2-enoyl-CoA

C4309

(2E)-dec-2-enoyl-CoA

C4299

(2E)-oct-2-enoyl-CoA

C7343

(S)-malyl-CoA

C5635

oleoyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C5922

(S)-3-hydroxyhexanoyl-CoA

C7353

(S)-3-hydroxydecanoyl-CoA

C15307

(S)-3-hydroxyoctanoyl-CoA

C6059

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C5879

(3R)-3-hydroxyoctadecanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C1177

propanoyl-CoA

C1175

butanoyl-CoA

C14697

decanoyl-CoA

C14677

octanoyl-CoA

C5892

palmitoyl-CoA

C2873

pristanoyl-CoA

C10758

3-oxoadipyl-CoA

C2009

3-oxopentanoyl-CoA

C2008

acetoacetyl-CoA

C6198

3-oxodecanoyl-CoA

C6200

3-oxohexanoyl-CoA

C6197

3-oxooctanoyl-CoA

C11197

(S)-3-hydroxy-isobutanoyl-CoA

C10050

FADH2

C10049

FMNH2

C10052

FMN

C10053

FAD

C5392

(S)-NADHX

C5394

(R)-NADHX

C14497

NADPH

C14500

NADH

C4018

NADP+

C4020

NAD+

C1869

caldariellaquinol

C5543

ubiquinol-8

C1680

menaquinol-8

C1863

demethylmenaquinol-8

C1867

3-demethylubiquinol-8

C10048

caldariellaquinone

C10611

(R)-lipoate

C10612

tetrahydrosarcinapterin

C10617

5-methyl-tetrahydrosarcinapterin

C10614

coenzyme A

C2239

oxidized coenzyme F420-2

C6007

MoO2-molybdopterin cofactor

C6003

guanylyl molybdenum cofactor

C7134

tetrahydropteroyl tri-L-glutamate

C7129

5,6,7,8-tetrahydrofolate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C10982

nicotinate

C10988

riboflavin

C4200

pyridoxal

C4210

pyridoxal 5'-phosphate

C4216

pyridoxamine

C4188

pyridoxamine 5'-phosphate

C4208

pyridoxine

C4214

pyridoxine 5'-phosphate

C10143

menadione

C4985

(S)-1-pyrroline-5-carboxylate

C2302

precorrin-3A

C2323

precorrin-7

C2300

precorrin-5

C2314

precorrin-3B

C2320

precorrin-4

C2317

precorrin-6B

C2308

precorrin-6A

C2297

precorrin-8x

C2305

precorrin-1

C2311

precorrin-2

C1705

sirohydrochlorin

C2001

hydantoin

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C15044

reduced riboflavin

C12708

7,8-dihydroneopterin 3'-phosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C12674

7,8-dihydroneopterin 2',3'-cyclic phosphate

C12678

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

C12664

7,8-dihydroneopterin

C12696

7,8-dihydromonapterin

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C10609

7,8-dihydropteroate

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C9455

guanine

C9454

adenine

C7813

2'-deoxyadenosine

C7848

2'-deoxyguanosine

C15085

guanosine

C15094

xanthosine

C15088

adenosine

C7785

hypoxanthine

C7743

dAMP

C7840

dGMP

C7749

dITP

C7751

dGTP

C7783

dATP

C7747

dIDP

C7823

dADP

C7807

dGDP

C7817

IDP

C7795

GDP

C7757

ADP

C7811

XMP

C7827

GMP

C7741

IMP

C7809

AMP

C7759

ITP

C7745

GTP

C7844

ATP

C8755

dCMP

C8707

cytosine

C8733

dCDP

C8752

dUDP

C4012

5,6-dihydrouracil

C7801

5,6-dihydrothymine

C8720

dTDP

C8732

CDP

C8764

dTTP

C8770

dUMP

C8744

dTMP

C8714

UDP

C8739

uracil

C11481

orotate

C8761

CTP

C8760

UTP

C8772

dCTP

C8724

dUTP

C7794

UDP-N-acetyl-α-D-quinovosamine

C7826

UDP-N-acetyl-α-D-fucosamine

C5130

UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine

C7788

UDP-2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

C5849

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C7804

UDP-α-D-galactofuranose

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C7790

UDP-N-acetyl-α-D-mannosamine

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C8666

UDP-α-D-galactose

C7780

UDP-α-D-glucose

C8567

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

C8559

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7822

UDP-N-acetyl-α-D-muramate

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C8547

UDP-N-acetyl-α-D-mannosaminuronate

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C1930

dTDP-β-L-rhamnose

C1896

dTDP-4-dehydro-β-L-rhamnose

C1939

dTDP-α-D-glucose

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C6945

5-fluorouracil

C2702

cytidine

C2706

uridine

C2519

thymidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C10601

thymine

C2245

CMP

C2241

UMP

C9540

preQ1

C15317

2',4,4',6'-tetrahydroxychalcone

C13354

preQ0

C13366

(indole-3-yl)acetonitrile

C6829

salicylaldehyde

C6975

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

C6934

4-hydroxybenzoate

C7139

4-tyrosol

C3093

urate

C8490

3-methoxy-4-hydroxyphenylglycol

C3649

benzaldehyde

C3641

(4-hydroxyphenyl)acetaldehyde

C3647

phenylacetaldehyde

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C2915

menadiol

C9501

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

C2879

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

C11421

protocatechuate

C11409

2,3-dihydroxybenzoate

C2763

3,4-dihydroxyphenylglycol

C2758

3,4-dihydroxyphenylglycolaldehyde

C11429

salicylate

C8968

benzoate

C8974

4-aminobenzoate

C8950

chorismate

C3316

(3E)-2-oxohex-3-enedioate

C6449

(4S)-4-hydroxy-2-oxoglutarate

C6442

succinate

C6443

fumarate

C5596

L-aspartate

C2802

(S)-malate

C8928

D-galactarate

C8919

D-glucarate

C5463

3-(carbamoylamino)-2-methylpropanoate

C13463

(2R,3S)-2-methylisocitrate

C3288

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

C8542

(2S,3S)-2-methylcitrate

C8544

cis-2-methylaconitate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C951

4-hydroxybutanoate

C6186

(S)-lactate

C6185

(R)-lactate

C3420

propanoate

C11517

acetate

C3421

formate

C3308

pyruvate

C3418

butanoate

C3412

decanoate

C3409

octanoate

C6163

leukotriene-D4

C6165

leukotriene-E4

C13266

(15Z)-tetracosenoate

C13210

oleate

C13298

(3E,5Z)-tetradecadienoate

C5001

apo-4'-lycopenoate

C6379

linoleate

C10590

α-linolenate

C10572

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

C13260

phytenate

C2774

pristanate

C3383

palmitate

C11482

(R)-pantoate

C11485

D-gluconate

C11487

D-mannonate

C2137

D-tagaturonate

C2021

aldehydo-D-galacturonate

C3315

3-(4-hydroxyphenyl)pyruvate

C3345

3-phenyl-2-oxopropanoate

C3351

glyoxylate

C3257

2-oxobutanoate

C3301

2-oxoglutarate

C3536

L-α-amino-ε-keto-pimelate

C5579

L-serine

C11441

β-alanine

C11435

(R)-β-lysine

C11433

(S)-3-amino-2-methylpropanoate

C11434

(R)-3-amino-2-methylpropanoate

C5597

L-alanine

C5588

L-leucine

C5581

L-proline

C12067

glycine

C5609

L-glutamine

C8797

D-glutamate

C5607

L-glutamate

C5630

Nω-hydroxy-L-arginine

C5584

L-lysine

C5605

L-histidine

C5642

L-arginine

C5573

L-tyrosine

C5577

L-threonine

C5643

L-asparagine

C5612

L-cysteine

C5575

L-tryptophan

C8805

D-aspartate

C8807

D-lysine

C12223

D-ornithine

C8799

D-alanine

C8796

D-proline

C8798

D-cysteine

C12073

L-aspartyl-4-phosphate

C6532

(2S, 3S)-3-methylaspartate

C13320

N-carbamoylglycine

C5476

formyl-L-isoglutamine

C5466

N-formimino-L-glutamate

C3621

N-acetyl-L-aspartate

C15000

N-acetyl-L-ornithine

C14973

N-acetyl-L-glutamate

C13322

N-carbamoyl-L-aspartate

C11955

O-acetyl-L-homoserine

C3652

L-threonine 3-O-phosphate

C3402

3-phospho-L-serine

C12303

L-citrulline

C5603

L-isoleucine

C5571

L-valine

C12237

L-canaline

C2426

S-sulfo-L-cysteine

C12203

S-adenosyl-L-homocysteine

C12233

L-glutamate-5-semialdehyde

C12227

O-succinyl-L-homoserine

C12229

O-phospho-L-homoserine

C15292

S-adenosyl-L-methionine

C12245

L-homoserine

C12239

L-aspartate 4-semialdehyde

C12231

L-ornithine

C5585

meso-diaminopimelate

C5592

L-selenocysteine

C5583

L-methionine

C5595

L-cystathionine

C5580

L,L-diaminopimelate

C5601

L-isoglutamine

C6090

methylglyoxal

C2040

diacetyl

C2858

glycolaldehyde

C3485

butan-1-al

C3529

1-octanal

C3523

1-propanal

C3483

formaldehyde

C3494

isobutanal

C3500

acetaldehyde

C6246

(S)-lactaldehyde

C14804

phytenal

C5533

L-glyceraldehyde

C9494

D-glyceraldehyde

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C2063

β-D-ribopyranose

C2109

α-D-galactopyranose

C2108

β-D-galactopyranose

C6134

α-L-rhamnopyranose

C6133

β-L-rhamnopyranose

C2065

aldehydo-D-ribose

C2061

α-D-ribofuranose

C2062

β-D-ribofuranose

C3449

butan-1-ol

C3447

propan-1-ol

C3450

ethanol

C3448

methanol

C14807

phytol

C3731

glycerol

C6555

galactitol

C2023

(S)-propane-1,2-diol

C10522

scyllo-inosose

C10525

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

C6488

phytate

C6477

D-myo-inositol (1,2,3,5,6) pentakisphosphate

C4420

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

C6241

1-oleoyl-sn-glycerol 3-phosphate

C3117

dioleoyl phosphatidate

C10874

apo-4'-lycopenal

C9304

trans,octacis-decaprenyl phosphate

C9075

mono-trans,octa-cis-decaprenyl diphosphate

C9077

(2E,6E)-farnesyl diphosphate

C1993

di-trans,octa-cis-undecaprenol

C4553

3-octaprenyl-4-hydroxybenzoate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C5382

all-trans-heptaprenyl diphosphate

C5378

geranylgeranyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C10235

heptosyl-Kdo2-lipid A

C10234

(heptosyl)2-Kdo2-lipid A

C9625

vanillylamine

C4068

5-dehydro-4-deoxy-D-glucuronate

C10688

maltotriose

C10689

maltotetraose

C10690

maltopentaose

C10692

maltoheptaose

C10691

maltohexaose

C10693

sucrose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C14474

N-acetyl-α-D-mannosamine

C5286

N-acetyl-β-D-glucosamine

C2012

keto-D-fructose

C8835

β-D-fructofuranose

C7089

keto-L-rhamnulose

C2143

D-xylulose

C11623

2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C10372

a peptidoglycan dimer (S. aureus)

C10381

a peptidoglycan dimer (mycobacteria)

C10370

a peptidoglycan dimer (E. faecium, tetrapeptide)

C10379

a peptidoglycan dimer (E. faeciums)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C14595

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C10364

a peptidoglycan with D,D cross-links (mycobacteria)

C10383

a peptidoglycan with L,D cross-links (mycobacteria)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C3124

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

C3135

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

C3132

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine

C3130

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C973

D-ribulose-1,5-bisphosphate

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C6673

sucrose 6F-phosphate

C8304

CMP-pseudaminate

C8305

CMP-3-deoxy-β-D-manno-octulosonate

C1015

GDP-α-D-glucose

C10263

ADP-α-D-glucose

C1043

GDP-4-dehydro-α-D-rhamnose

C993

GDP-4-dehydro-6-deoxy-β-L-galactose

C1009

GDP-α-D-mannose

C7189

GDP-β-L-fucose

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C10356

4-phospho-D-erythronate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C6711

α-D-ribose 5-phosphate

C6709

β-D-ribose 5-phosphate

C8700

aldehydo-D-arabinose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8819

L-fuculose 1-phosphate

C8817

L-rhamnulose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C3675

D-altronate

C10266

ppGpp

C10267

pppGpp

C7652

cyclic-AMP

C10288

adenylo-succinate

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5552

5'-deoxyadenosine

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C9419

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

C9420

two adjacent thymidines in DNA

C9773

5-fluorocytosine

C4240

reduced β-nicotinamide D-ribonucleotide

C4243

β-nicotinamide D-ribonucleotide

C1817

cyclic di-3',5'-guanylate