an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

carbon monoxide

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

(S)-4-amino-5-oxopentanoate

4-pyridoxolactone

5-methylcytosine

(R)-mevalonate

(R)-5-phosphomevalonate

lipid X

coproporphyrinogen III

xanthine

dethiobiotin

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

(S)-2-amino-6-oxohexanoate

7,8-diaminopelargonate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

citrate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

benzoylsuccinyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-oleoylglycerol

N-(5-phosphoribosyl)-anthranilate

nicotinate adenine dinucleotide

shikimate

oxalosuccinate

prephenate

2-amino-3-carboxymuconate-6-semialdehyde

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

shikimate 3-phosphate

3-hydroxyanthranilate

anthranilate

lipid A disaccharide (E. coli)

enol-phenylpyruvate

4'-phosphopantetheine

pimeloyl-CoA

8-amino-7-oxononanoate

2-succinylbenzoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

succinate semialdehyde

quinolinate

(S)-dihydroorotate

itaconate

N-acetyl-L-glutamate 5-semialdehyde

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

urea-1-carboxylate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

histidinal

histidinol

formamide

4-imidazolone-5-propanoate

4-fumaryl-acetoacetate

acetoacetate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

(S)-3-methyl-2-oxopentanoate

5-amino-6-(D-ribitylamino)uracil

6-amino-2-oxohexanoate

2-keto-L-gulonate

oxaloacetate

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

carbamoyl phosphate

carbonic acid

imidazole acetaldehyde

4-imidazoleacetate

5-hydroxyindole acetate

3,4-dihydroxyphenylacetaldehyde

prop-2-ynal

propynoate

D-glucurono-6,3-lactone

4-acetamidobutanal

4-acetamidobutanoate

dimethylsulfoniopropanoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-methyl-2-oxobutanoate

2-dehydropantoate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

DNA without lesion

(E)-4-coumaroyl-CoA

5-enolpyruvoyl-shikimate 3-phosphate

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

urocanate

(L-threonylcarbamoyl)adenylate

2-chloro-4-methyl-cis,cis-muconate

4-methylmuconolactone

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

1,4-dihydroxy-2-naphthoate

indole-3-ethanol

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

H₂O

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

hydrogen selenide

O-acetyl-L-serine

3'-phosphoadenylyl-sulfate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 4-sulfate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

3-dehydroshikimate

3-dehydroquinate

hydrogen peroxide

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

γ-L-glutamyl 5-phosphate

glycolate

4-amino-4-deoxychorismate

ethanolamine

4-methyl-2-oxopentanoate

phosphoenolpyruvate

lipid IV_A

glycerone phosphate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

orotidine 5'-phosphate

CO₂

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

isopentenyl diphosphate

prenyl diphosphate

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

picolinate

5-hydroxyindole thiazolidine carboxylate

ammonia

aminoacetone

4-oxoglutaramate

1-piperideine-2-carboxylate

1-piperideine 6-carboxylate

5-aminopentanoate

α-D-galacturonate 1-phosphate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

cyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

crotonate

5-oxo-L-proline

(R)-4'-phosphopantothenoyl-L-cysteine

selenodiglutathione

glutathioselenol

glutathione disulfide

4-amino-2-methyl-5-pyrimidinemethanol

(R)-mevalonate diphosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

(R)-4'-phosphopantothenate

α-D-glucosamine 1-phosphate

H₂

acetyl phosphate

N⁵-carboxyaminoimidazole ribonucleotide

L-arginino-succinate

3-deoxy-D-manno-octulosonate 8-phosphate

L-canavanine

urea

prephytoene diphosphate

(R)-pantothenate

4-aminobutanoate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-maleyl-acetoacetate

homogentisate

(2-hydroxyphenyl)acetate

N-Formyl-L-kynurenine

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

2',4,4',6'-tetrahydroxychalcone

methylglyoxal

(2E,6E)-farnesal

salicylaldehyde

fluoroacetaldehyde

1-octanal

formaldehyde

acetaldehyde

1-propanal

isobutanal

butan-1-al

phytenal

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

L-sorbosone

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-galactopyranose

D-glyceraldehyde

L-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

aldehydo-L-arabinose

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

4-tyrosol

urate

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

protocatechuate

4,6-dichloro-3-methylcatechol

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

(+)-dihydrokaempferol

(+)-taxifolin

(2R,3S,4S)-leucopelargonidin

(2R,3S,4S)-leucocyanidin

baicalein

6,7-dehydrobaicalein

salicylate

4-aminobenzoate

benzoate

preQ₀

L-cysteinylglycine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

DNA with lesion

phenylacetate

ethylphosphate

Mg-protoporphyrin

cobalt-precorrin-4

cobalt-precorrin-3

cob(II)yrinate c-monoamide

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-5A

cobyrinate

cob(II)yrinate a,c-diamide

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

protoheme

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

N-acetyl-D-mannosamine 6-phosphate

N-acetyl-β-neuraminate 9-phosphate

1-oleoyl-2-lyso-glycerone phosphate

CMP-N-acetyl-β-neuraminate

5,10-methenyltetrahydrofolate mono-L-glutamate

superoxide

monodehydroascorbate radical

hydroxyl radical

Fe³⁺

Fe²⁺

Mg²⁺

Cu²⁺

Zn²⁺

Co²⁺

H⁺

ammonium

trimethyl sulfonium

selenide

selenate

thiosulfate

sulfite

hydrogencarbonate

sulfate

hydrogensulfite

selenite

phosphate

diphosphate

triphosphate

chloride

N-acetyl-β-neuraminate

3-dimethylsulfoniopropionaldehyde

methionol

3-(methylsulfanyl)propanal

S-(hydroxymethyl)glutathione

dimethyl sulfide

methanethiol

glutathione

S-sulfanylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

N-acetyl-D-galactosamine 6-O-sulfate

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

FMN

FAD

FADH₂

FMNH₂

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

3,5-dichloro-2-methyl-muconolactone

3,5-dichloro-2-methyl-muconate

2-chloro-5-methyl-dienelactone

3-chloro-cis,cis-muconate

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-dienelactone

3-chloro-2-methyl-maleylacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetate

nicotinamide

acetamide

isopenicillin N

penicillin N

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(indol-3-yl)acetate

(S)-3-hydroxy-3-methylglutaryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

4-cis-undecenoyl-CoA

4-trans-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

(3E)-dec-3-enoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

α-linolenoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

linoleoyl-CoA

γ-linolenoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

itaconyl-CoA

3'-dephospho-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

methylacrylyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(3S)-hydroxyadipyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

acetyl-CoA

malonyl-CoA

2-methylbutanoyl-CoA

phenylacetyl-CoA

(E)-glutaconyl-CoA

glutaryl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

butanoyl-CoA

propanoyl-CoA

lauroyl-CoA

hexanoyl-CoA

decanoyl-CoA

octanoyl-CoA

pristanoyl-CoA

palmitoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

cis-dienelactone

5-chloro-3-methyl-cis-dienelactone

L-galactono-1,4-lactone

AAI-1

HAI-1

PAI-1

PAI-1-2

VAI-1

VAI-1-2

thiamine

nicotinate

L-ascorbate

riboflavin

pyridoxal

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine

pyridoxine

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

coenzyme A

(S)-1-pyrroline-5-carboxylate

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

precorrin-2

precorrin-1

sirohydrochlorin

preQ₁

cytosine

thymine

uracil

guanine

hypoxanthine

adenine

adenosine

xanthosine

inosine

guanosine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

dAMP

dGMP

dATP

dGTP

dITP

dADP

dGDP

dIDP

XTP

ITP

GTP

ATP

GDP

IDP

ADP

XMP

IMP

GMP

AMP

orotate

dCMP

UDP

dTDP

CDP

CTP

dCDP

dCTP

dUDP

dUTP

UTP

dTTP

dUMP

dTMP

CMP

UMP

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

5-fluorouracil

thymidine

2'-deoxycytidine

2'-deoxyuridine

uridine

cytidine

propanoate

formate

pyruvate

acetate

(R)-lactate

chorismate

3-methyl-cis,cis-muconate

fumarate

succinate

L-aspartate

(S)-malate

D-glucarate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

decanoate

octanoate

(2E,6E)-farnesoate

3-oxoadipate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

γ-linolenate

linoleate

apo-4'-lycopenoate

phytenate

pristanate

palmitate

2-oxobutanoate

glyoxylate

2-oxoglutarate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

(R)-pantoate

4-deoxy-L-threo-hex-4-enopyranuronate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

L-kynurenine

L-tyrosine

L-tryptophan

L-phenylalanine

L-histidine

L-serine

β-alanine

L-alanine

glycine

L-leucine

L-glutamine

L-proline

D-glutamate

L-glutamate

L-arginine

L-lysine

L-threonine

L-asparagine

L-cysteine

D-alanine

D-lysine

D-cysteine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

L-saccharopine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

formyl-L-isoglutamine

N-formimino-L-glutamate

N-(3-oxooctanoyl)-L-homoserine

N-(3-hydroxybutanoyl)-L-homoserine

N-(3-oxododecanoyl)-L-homoserine

N-(butyryl)-L-homoserine

N-(3-oxohexanoyl)-L-homoserine

N-(octanoyl)-L-homoserine

3-hydroxy-L-kynurenine

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-isoleucine

L-valine

L-ornithine

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-sulfo-L-cysteine

L-homocysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

L-canaline

O-succinyl-L-homoserine

L-selenocysteine

meso-diaminopimelate

L-allo-threonine

L-methionine

L-cystathionine

L,L-diaminopimelate

L-isoglutamine

a coenzyme-A group

(2E,6E)-farnesol

ethanol

propan-1-ol

phytol

butan-1-ol

methanol

glycerol

L-arabinitol

galactitol

D-sorbitol

D-mannitol

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

apo-4'-lycopenal

hydroxy-β-zeacarotene

β-cryptoxanthin

zeaxanthin

15-cis-phytoene

all-trans-phytoene

plectaniaxanthin

myxol

β-carotene

β-zeacarotene

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenol

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

α-Kdo-(2→6)-lipid IV_A

betanidin

betanidin quinone

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl--D-galactosamine 6-sulfate

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

sucrose

α,α-trehalose

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-galactosamine

N-acetyl-α-D-mannosamine

L-sorbosone 1,4-lactone

L-sorbosone 2,6-lactone

keto-L-sorbose

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-mannuronate

GDP-4-dehydro-α-D-rhamnose

GDP-4-dehydro-6-deoxy-β-L-galactose

GDP-β-L-fucose

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-mannose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

L-gulonate

aldehydo-L-galactonate

8-oxo-dGTP

8-oxo-dGMP

5'-deoxyadenosine

adenylo-succinate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

cyclic-GMP

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-GTP

8-oxo-GMP

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

5-fluorocytosine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate