an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

S-methyl-5'-thioadenosine

α-ribazole

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-amino-4-deoxychorismate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

1,4-dihydroxy-2-naphthoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(L-threonylcarbamoyl)adenylate

hydroxylamine

2-oleoylglycerol

ethanolamine

(lipoyl)adenylate

thiamine diphosphate

propanoyl phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

macrocin

DNA without lesion

urea-1-carboxylate

N-acetyl-D-muramate 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

S-adenosyl 3-(methylsulfanyl)propylamine

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

formamide

4-imidazolone-5-propanoate

N-acetylglutamyl-phosphate

5-amino-6-(D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

indole-3-ethanol

autoinducer 2

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

2-isopropylmaleate

(S)-ureidoglycolate

urea

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

(1R,2R)-cyclohexa-3,5-diene-1,2-diol

dihydroxyacetone

5-dehydro-4-deoxy-D-glucarate

L-quinate

3-dehydroshikimate

shikimate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroquinate

prephenate

glycolate

S-Inosyl-L-homocysteine

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

porphobilinogen

preuroporphyrinogen

(R)-1-amino-2-propanol O-2-phosphate

urocanate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

orotidine 5'-phosphate

cyclohex-1,5-diene-1-carbonyl-CoA

3-ureidopropanoate

N-acetyl-L-glutamate 5-semialdehyde

(S)-dihydroorotate

quinolinate

chloramphenicol

succinate semialdehyde

acetoacetate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

oxalate

4-(2-amino-3-hydroxyphenyl)-2,4-dioxobutanoate

4-(2-aminophenyl)-2,4-dioxobutanoate

mesaconate

(R)-pantothenate

α-D-glucosamine 1-phosphate

N-carbamoylputrescine

tartronate semialdehyde

hydroxypyruvate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

citrate

β-D-ribosylnicotinate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

α-D-galactosyl-diphosphoundecaprenol

2-oxoglutaramate

γ-L-glutamyl 5-phosphate

hydrogen selenide

O-acetyl-L-serine

O-ureido-L-homoserine

canavaninosuccinate

L-canavanine

L-arginino-succinate

glycerone phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

selenophosphate

coproporphyrinogen III

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

citraconate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

S-ribosyl-L-homocysteine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

aminoacetone

D-gluconate 6-phosphate

3-phosphooxypyruvate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

histidinal

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

histidinol

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

acetyl phosphate

isopentenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

adenosine 3',5'-bisphosphate

enol-phenylpyruvate

oxaloacetate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

xanthine

carbamoyl phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

methylarsonite

cacodylate

methylarsonate

arsenite

anthranilate

N-(5-phosphoribosyl)-anthranilate

4-methylbenzyl alcohol

3-methylbenzyl alcohol

3-methylbenzaldehyde

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

4-methylmuconolactone

H₂

N-acetyl-L,L-2,6-diaminopimelate

2-dehydropantoate

(2S,5S)-hexanediol

2,5-hexanedione

carbon monoxide

CO₂

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

hydrogen peroxide

5-methylcytosine

H₂O

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

kynurenate

xanthurenate

5-hydroxyindole thiazolidine carboxylate

pyruvic oxime

4-oxoglutaramate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

2-iminoacetate

N⁵-carboxyaminoimidazole ribonucleotide

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-amino-3-carboxymuconate-6-semialdehyde

CDP-glycerol

4-amino-2-methyl-5-pyrimidinemethanol

3,5-dihydro-4H-imidazol-4-one

4-aminoimidazole

5-aminoimidazole-4-carboxylate

5-ureidoimidazole-4-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

1,6-anhydro-N-acetyl-β-muramate

4-aminobutanoate

dialurate

6-phospho D-glucono-1,5-lactone

adenosine 5'-phosphosulfate

2-(α-hydroxyethyl)thiamine diphosphate

oxalosuccinate

1-deoxy-L-glycero-tetrulose 4-phosphate

2-iminobutanoate

2-iminosuccinate

2-iminopropanoate

DNA with lesion

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

cob(I)alamin

cob(I)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

adenosylcobalamin 5'-phosphate

adenosylcobalamin

Mg-protoporphyrin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cobalt-precorrin-2

cobalt-sirohydrochlorin

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

protoheme

N₂

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

siroheme

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

1-oleoyl-2-lyso-glycerone phosphate

CMP-N-acetyl-β-neuraminate

(R)-citramalate

(S)-citramalate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

(R)-2-hydroxyglutarate

monodehydroascorbate radical

superoxide

cyanophycin primer

cyanophycin primer-L-aspartate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-cysteinylglycine

D-alanyl-D-alanine

chloramphenicol 3-acetate

N-acetyl-β-neuraminate

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

taurine

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

Fe³⁺

ammonium

K⁺

H⁺

Mg²⁺

Fe²⁺

Cd²⁺

Co²⁺

Cu²⁺

Ca²⁺

trimethyl sulfonium

sulfite

selenide

hydrogencarbonate

nitrite

nitrate

thiosulfate

sulfate

hydrogensulfite

phosphonate

phosphate

triphosphate

diphosphate

chloride

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

putrescine

spermidine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

3-chloro-cis,cis-muconate

2-chloro-5-methyl-dienelactone

3,5-dichloro-2-methyl-muconate

3,5-dichloro-2-methyl-muconolactone

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-dienelactone

3-chloro-2-methyl-maleylacetate

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

4,6-dichloro-3-methylcatechol

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

17β-estradiol

estrone

(indol-3-yl)acetate

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

4-hydroxybenzoyl-CoA

chenodeoxycholoyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

choloyl-CoA

succinyl-CoA

dihomo γ-linolenoyl-CoA

CoA-disulfide

benzoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

formyl-CoA

oxalyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

(3S)-citryl-CoA

3'-dephospho-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

isobutanoyl-CoA

acetyl-CoA

4-hydroxybutanoyl-CoA

methylacrylyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

butanoyl-CoA

lauroyl-CoA

decanoyl-CoA

octanoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

icosanoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

cis-dienelactone

L-galactono-1,4-lactone

tylosin

D-glucono-1,5-lactone

FMNH₂

FADH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

menaquinol-8

menaquinol-6

menaquinol-7

demethylmenaquinol-8

demethylmenaquinol-6

demethylmenaquinol-7

(2E,6E)-farnesyl diphosphate

pristanate

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

thiamine

L-ascorbate

nicotinate

riboflavin

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

menadione

(S)-1-pyrroline-5-carboxylate

precorrin-6A

precorrin-3A

precorrin-6B

precorrin-7

precorrin-8x

precorrin-3B

precorrin-4

precorrin-5

precorrin-1

precorrin-2

sirohydrochlorin

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydropteroate

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

guanosine

inosine

xanthosine

adenosine

hypoxanthine

purine

dGTP

dATP

dGDP

dADP

GDP

ADP

IMP

GMP

XMP

AMP

GTP

ATP

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

orotate

5,6-dihydrothymine

5,6-dihydrouracil

dCTP

UTP

dTTP

dCDP

CDP

UDP

dUTP

dUMP

CTP

cytosine

uracil

dTDP

dTMP

dCMP

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-quinovosamine

UDP-N-acetyl-α-D-fucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

UMP

CMP

preQ₁

preQ₀

(indole-3-yl)acetonitrile

4-hydroxybenzoate

urate

benzyl alcohol

4-tyrosol

8-hydroxypurine

6,8-dihydroxypurine

3-methoxy-4-hydroxyphenylglycol

4-methylbenzaldehyde

benzaldehyde

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

4-methylphenol

catechol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

protocatechuate

4-aminobenzoate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

chorismate

3-methyl-cis,cis-muconate

(4S)-4-hydroxy-2-oxoglutarate

succinate

fumarate

L-aspartate

(S)-malate

D-glucarate

3-(carbamoylamino)-2-methylpropanoate

cis-aconitate

(2R)-homocitrate

cis-homoaconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

4-hydroxybutanoate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

propanoate

formate

pyruvate

acetate

butanoate

laurate

decanoate

octanoate

3-oxoadipate

(15Z)-tetracosenoate

oleate

di-homo-γ-linolenate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

arachidate

myristate

stearate

palmitate

D-gluconate

(R)-pantoate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

glyoxylate

2-oxoglutarate

L-kynurenine

L-α-amino-ε-keto-pimelate

L-serine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

L-proline

L-leucine

glycine

L-alanine

L-glutamine

D-glutamate

L-glutamate

L-lysine

L-arginine

L-histidine

L-tyrosine

L-threonine

L-asparagine

L-cysteine

L-phenylalanine

L-tryptophan

D-aspartate

D-alanine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

(2S, 3S)-3-methylaspartate

N-formimino-glycine

N-carbamoylglycine

N-formyl-L-glutamate

L-2-acetamido-6-oxoheptanedioate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-hydroxy-L-kynurenine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-valine

L-isoleucine

L-canaline

L-homoserine

O-succinyl-L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

S-sulfo-L-cysteine

L-homocysteine

L-ornithine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

hypoglycin A

meso-diaminopimelate

L-selenocysteine

L-methionine

L,L-diaminopimelate

L-isoglutamine

L-cystathionine

methylglyoxal

diacetyl

(R)-acetoin

glycolaldehyde

isobutanal

1-propanal

formaldehyde

acetaldehyde

butan-1-al

(S)-lactaldehyde

phytenal

D-glyceraldehyde

L-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

α-D-galactopyranose

β-D-galactopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

propan-1-ol

methanol

ethanol

butan-1-ol

phytol

glycerol

galactitol

D-sorbitol

L-iditol

ethylene glycol

(R,R)-2,3-butanediol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

iron(III) dicitrate

ferric-enterobactin complex

1-(β-D ribofuranosyl)nicotinamide

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

keto-L-sorbose

keto-D-fructose

β-D-fructofuranose

keto-L-rhamnulose

D-xylulose

L-ribulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

GDP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

aldehydo-L-galactonate

L-gulonate

cyclic-AMP

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

5'-deoxyadenosine

adenylo-succinate

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

5-fluorocytosine

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hypoglycin B