an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-(α-hydroxyethyl)thiamine diphosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

4-amino-2-methyl-5-pyrimidinemethanol

2-iminoacetate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

hydroxypyruvate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

ammonia

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

2-amino-3-carboxymuconate-6-semialdehyde

S-methyl-5'-thioadenosine

dialurate

N⁵-carboxyaminoimidazole ribonucleotide

(R)-1-amino-2-propanol O-2-phosphate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(L-threonylcarbamoyl)adenylate

3-keto-β-D-galactose

histidinal

histidinol

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-oleoylglycerol

orotidine 5'-phosphate

(S)-dihydroorotate

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

4-pyridoxolactone

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

glycolate

chloramphenicol

S-adenosyl 3-(methylsulfanyl)propylamine

(S)-2-amino-6-oxohexanoate

carboxynorspermidine

norspermidine

3-phosphooxypyruvate

ethyl acetate

preuroporphyrinogen

porphobilinogen

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

L-canavanine

L-arginino-succinate

canavaninosuccinate

nicotinate adenine dinucleotide

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

coenzyme F₃₉₀-A

hydroxylamine

thiamine diphosphate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

dihydroxyacetone

2-dehydro-3-deoxy-D-gluconate

(S)-2,3-dihydrodipicolinate

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(R)-pantothenate

2-dehydropantoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-dehydroshikimate

thiamine phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

acetoacetate

acetyl phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

arsenite

shikimate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

urea

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

3-dehydroquinate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

β-D-ribosylnicotinate

(S)-2,3,4,5-tetrahydrodipicolinate

L-tartrate

meso-tartrate

2-hydroxy-3-oxosuccinate

oxaloacetate

citrate

oxalosuccinate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

coproporphyrinogen III

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

γ-L-glutamyl 5-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

prephenate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

carbamoyl phosphate

O-ureido-L-homoserine

H₂

carbon monoxide

α-D-glucosamine 1-phosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

4-amino-4-deoxychorismate

anthranilate

N-(5-phosphoribosyl)-anthranilate

DNA without lesion

hydrogen selenide

O-acetyl-L-serine

xanthine

phosphoenolpyruvate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

nigerose

CO₂

β-nicotinate D-ribonucleotide

hydrogen peroxide

glycerone phosphate

quinolinate

H₂O

enol-phenylpyruvate

5-hydroxyindole thiazolidine carboxylate

pyruvic oxime

1-piperideine 6-carboxylate

DNA with lesion

phenylacetate

ethylphosphate

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

adenosyl-cobinamide phosphate

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-5A

cobalt-precorrin-3

cobalt-precorrin-4

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobyrate

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosylcobinamide

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

Mg-protoporphyrin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

protoheme

N₂

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-I

siroheme

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

1-oleoyl-2-lyso-glycerone phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

nitric oxide

chloramphenicol 3-acetate

dimethyl sulfide

S-methyl-L-methionine

methionol

3-(methylsulfanyl)propanal

glutathione

methanethiol

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

ammonium

H⁺

Na⁺

Fe²⁺

Co²⁺

Cd²⁺

Mg²⁺

Mo²⁺

trimethyl sulfonium

hydrogencarbonate

thiosulfate

phosphate

triphosphate

diphosphate

chloride

cyanophycin primer-L-aspartate

cyanophycin primer

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

2-iminobutanoate

2-iminosuccinate

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

spermidine

putrescine

glycine betaine

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

acetamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

(indol-3-yl)acetate

butyl acetate

geranyl acetate

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

phenylacetyl-CoA

3'-dephospho-CoA

malonyl-CoA

succinyl-CoA

acetyl-CoA

crotonyl-CoA

(S)-malyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

propanoyl-CoA

butanoyl-CoA

acetoacetyl-CoA

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ubiquinol-8

3-demethylubiquinol-8

coenzyme A

oxidized coenzyme F₄₂₀-2

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

thiamine

riboflavin

nicotinate

pyridoxine 5'-phosphate

pyridoxal

pyridoxal 5'-phosphate

menadione

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

precorrin-3A

precorrin-5

precorrin-3B

precorrin-4

precorrin-6A

precorrin-6B

precorrin-7

precorrin-8x

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

inosine

guanosine

xanthosine

adenosine

hypoxanthine

dIMP

dITP

dATP

dGTP

dADP

dGDP

IDP

GDP

ADP

IMP

XMP

GMP

AMP

XTP

ITP

GTP

ATP

dCTP

dTTP

dTDP

dUTP

orotate

dTMP

dipicolinate

dUDP

UDP

dCDP

CDP

CTP

uracil

UTP

dCMP

dUMP

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

UMP

CMP

preQ₁

preQ₀

(indole-3-yl)acetonitrile

urate

4-hydroxybenzoate

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

4-methylphenol

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

4-aminobenzoate

chorismate

fumarate

L-aspartate

succinate

(S)-malate

(2R)-homocitrate

(1R,2S)-homoisocitrate

cis-homoaconitate

cis-aconitate

D-threo-isocitrate

(S)-lactate

(R)-lactate

formate

propanoate

acetate

pyruvate

butanoate

D-mannonate

(R)-pantoate

D-tagaturonate

aldehydo-D-galacturonate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

L-α-amino-ε-keto-pimelate

L-serine

β-alanine

L-proline

glycine

L-alanine

L-glutamine

L-leucine

L-glutamate

D-glutamate

L-histidine

N^ω-hydroxy-L-arginine

L-arginine

L-lysine

L-threonine

L-tyrosine

L-asparagine

L-cysteine

L-phenylalanine

L-tryptophan

D-aspartate

D-alanine

L-saccharopine

L-aspartyl-4-phosphate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-isoleucine

L-valine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-ornithine

L-canaline

L-homoserine

O-succinyl-L-homoserine

L-homocysteine

S-sulfo-L-cysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-cystathionine

methylglyoxal

diacetyl

glycolaldehyde

butan-1-al

formaldehyde

acetaldehyde

1-propanal

isobutanal

(S)-lactaldehyde

phytenal

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-galactopyranose

α-D-galactopyranose

α-D-xylopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

ethanol

propan-1-ol

phytol

glycerol

D-mannitol

geraniol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

isoprimeverose

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

sucrose

allolactose

α-lactose

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

keto-D-fructose

β-D-fructofuranose

D-xylulose

L-ribulose

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

6-deoxy-5-ketofructose 1-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

D-altronate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

ppGpp

pppGpp

adenylo-succinate

cyclic-AMP

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate