an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

pyruvic oxime

4-oxoglutaramate

lipid X

lipid A disaccharide (E. coli)

lipid IV_A

pseudouridine

4-amino-2-methyl-5-pyrimidinemethanol

selenodiglutathione

glutathioselenol

3'-phosphoadenylyl-sulfate

(S)-ureidoglycolate

5-amino-6-(5-phospho-D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

3,5-dihydro-4H-imidazol-4-one

4-aminoimidazole

5-aminoimidazole-4-carboxylate

5-ureidoimidazole-4-carboxylate

2-iminoacetate

N⁵-carboxyaminoimidazole ribonucleotide

2-amino-3-carboxymuconate-6-semialdehyde

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-(α-hydroxyethyl)thiamine diphosphate

oxalosuccinate

dialurate

6-phospho D-glucono-1,5-lactone

ammonia

indole-3-lactate

glutathione disulfide

CDP-glycerol

ManNAc-GlcNAc-PP-undecaprenol

1,6-anhydro-N-acetyl-β-muramate

(indol-3-yl)pyruvate

hydroxylamine

DNA without lesion

glutathionylspermidine

4-fumaryl-acetoacetate

acetoacetate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

(S)-mandelate

(R)-mandelate

phloretin

phloroglucinol

phloretate

(lipoyl)adenylate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

4-guanidinobutyramide

chloroacetaldehyde

1,4-dihydroxy-2-naphthoate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

(S)-4-amino-5-oxopentanoate

γ-L-glutamyl 5-phosphate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N-acetylmuramoyl-L-ala-D-glu-(L)-meso-diaminopimelate -(L)-D-ala

N-acetylmuramoyl-L-ala-D-glu

nicotinate adenine dinucleotide

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

(2S)-2-isopropylmalate

2-isopropylmaleate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

histidinal

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

histidinol

(R)-4'-phosphopantothenoyl-L-cysteine

thiamine diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

arsenite

anthranilate

N-(5-phosphoribosyl)-anthranilate

N-succinyl-L,L-2,6-diaminopimelate

coproporphyrinogen III

5-methylcytosine

2-dehydropantoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

3-oxopropanoate

4-aminobutanoate

urea-1-carboxylate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

formamide

4-imidazolone-5-propanoate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

ethanolamine

L-canavanine

urea

phosphocholine

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

S-ribosyl-L-homocysteine

autoinducer 2

xanthine

β-D-fructose 2,6-bisphosphate

4'-phosphopantetheine

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

chloramphenicol

N-acetyl-D-muramate 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

dihydroxyacetone

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

selenophosphate

acetyl phosphate

tartronate semialdehyde

5-dehydro-4-deoxy-D-glucarate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

H₂

shikimate

3-dehydroshikimate

enol-phenylpyruvate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroquinate

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

hydrogen peroxide

5,6-dimethylbenzimidazole

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

(R)-1-amino-2-propanol O-2-phosphate

(R)-1-aminopropan-2-ol

3-phosphooxypyruvate

urocanate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

hydroxypyruvate

α-D-galactosyl-diphosphoundecaprenol

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

β-D-ribosylnicotinate

isopentenyl diphosphate

α-ribazole 5'-phosphate

α-ribazole

orotidine 5'-phosphate

3-ureidopropanoate

1,3-propanediol

3-hydroxypropanal

4-amino-4-deoxychorismate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

pseudouridine 5'-phosphate

(S)-dihydroorotate

carbon monoxide

β-nicotinate D-ribonucleotide

quinolinate

crotonate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

succinate semialdehyde

hydrogen selenide

O-acetyl-L-serine

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

oxaloacetate

citrate

mesaconate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-C-methyl-D-erythritol 4-phosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

α-D-glucosamine 1-phosphate

phosphoenolpyruvate

N-carbamoylputrescine

CO₂

carbamoyl phosphate

glycerone phosphate

hydroxyl radical

superoxide

chloramphenicol 3-acetate

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

methanethiol

glutathione

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

sulfate

hydrogensulfite

selenite

nitrite

nitrate

selenate

selenide

sulfite

thiosulfate

hydrogencarbonate

phosphate

triphosphate

diphosphate

Fe³⁺

ammonium

K⁺

H⁺

Fe²⁺

Cu²⁺

Co²⁺

trimethyl sulfonium

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

2-aminoprop-2-enoate

agmatine

spermine

cadaverine

putrescine

spermidine

choline

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-chloroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

allantoate

(S)-(+)-allantoin

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

(+)-7-epi-jasmonate

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

4-hydroxybutanoyl-CoA

2-methylacetoacetyl-CoA

dihomo γ-linolenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

isobutanoyl-CoA

3'-dephospho-CoA

succinyl-CoA

acetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

crotonyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

D-glucono-1,5-lactone

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

ubiquinol-10

ubiquinol-7

ubiquinol-8

ubiquinol-9

menaquinol-7

menaquinol-9

menaquinol-6

menaquinol-10

menaquinol-11

menaquinol-12

menaquinol-13

menaquinol-8

demethylmenaquinol-7

demethylmenaquinol-9

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-11

demethylmenaquinol-12

demethylmenaquinol-13

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

4-methylphenol

L-homocysteine

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

thiamine

riboflavin

nicotinate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

menadione

(S)-1-pyrroline-5-carboxylate

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-4

cobalt-precorrin-5A

cobalt-precorrin-5B

cobalt-precorrin-6A

precorrin-6A

precorrin-3B

precorrin-4

precorrin-5

cobalt-precorrin-2

cobalt-precorrin-3

precorrin-7

precorrin-8x

precorrin-6B

precorrin-1

precorrin-2

cobyrinate

sirohydrochlorin

cob(I)alamin

adenosylcobalamin

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropterin

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

guanosine

inosine

xanthosine

adenosine

purine

hypoxanthine

dGMP

dAMP

dGTP

dATP

dGDP

dADP

GDP

ADP

XMP

GMP

AMP

IMP

XTP

ITP

GTP

ATP

CDP-choline

dTDP

cytosine

dCDP

CDP

dTTP

dTMP

dUTP

dUMP

dCTP

dCMP

orotate

5,6-dihydrothymine

5,6-dihydrouracil

uracil

UDP

CTP

UTP

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-4-dehydro-β-L-rhamnose

CDP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

CMP

UMP

preQ₁

preQ₀

8-hydroxypurine

6,8-dihydroxypurine

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

urate

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

2,3-dihydroxybenzoate

protocatechuate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

4-aminobenzoate

3-(carbamoylamino)-2-methylpropanoate

cis-homoaconitate

3-carboxy-cis,cis-muconate

(2R)-homocitrate

cis-aconitate

D-threo-isocitrate

4-hydroxybutanoate

(S)-lactate

(R)-lactate

(R)-2-hydroxyglutarate

(R)-glycerate

propanoate

formate

pyruvate

acetate

butanoate

3-oxoadipate

oleate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

stearate

palmitate

D-gluconate

(R)-pantoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

2-oxobutanoate

L-α-amino-ε-keto-pimelate

L-cysteine

L-tyrosine

L-serine

L-threonine

glycine

L-glutamine

L-asparagine

L-arginine

L-histidine

L-lysine

L-glutamate

L-aspartate

L-phenylalanine

L-tryptophan

D-aspartate

D-alanine

D-glutamate

S-sulfanyl-L-cysteine

L-aspartyl-4-phosphate

(2S, 3S)-3-methylaspartate

N-formimino-glycine

N-carbamoylglycine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-cystine

L-glutamate-5-semialdehyde

hypoglycin A

L-canaline

L-homoserine

O-succinyl-L-homoserine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

S-sulfo-L-cysteine

O-phospho-L-homoserine

S-adenosyl-L-methionine

L-ornithine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-valine

L-leucine

L-isoleucine

L-proline

L-alanine

L-isoglutamine

L,L-diaminopimelate

L-cystathionine

β-alanine

(R)-3-amino-2-methylpropanoate

chorismate

succinate

fumarate

(S)-malate

D-galactarate

D-glucarate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

methylglyoxal

diacetyl

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

(R)-acetoin

glycolaldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

L-glyceraldehyde

butan-1-al

formaldehyde

isobutanal

1-propanal

acetaldehyde

(S)-lactaldehyde

phytenal

butan-1-ol

methanol

propan-1-ol

ethanol

phytol

glycerol

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

dioleoyl phosphatidate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

keto-D-fructose

β-D-fructofuranose

keto-L-rhamnulose

D-ribulose

D-xylulose

L-ribulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

ADP-α-D-glucose

GDP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

8-oxo-GTP

8-oxo-GMP

cyclic-AMP

8-oxo-dGTP

8-oxo-dGMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

pppGpp

ppGpp

5'-deoxyadenosine

adenylo-succinate

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

5-fluorocytosine

hypoglycin B

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

DNA with lesion

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

cob(I)inamide

cobalt-sirohydrochlorin

cobalt-factor III

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

adenosylcobinamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

protoheme

N₂

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

siroheme

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

(S)-citramalate

2-iminobutanoate

2-iminosuccinate

5,10-methenyltetrahydrofolate mono-L-glutamate

cyanophycin primer-L-aspartate

cyanophycin primer

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

meso-diaminopimeloyl-alanine

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine